Rroxscaffold_1G00058140

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0018318
Physical Location & Seq
Reverse (-)
80019228 .. 80022710
3483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00058140.1

Sequence Viewer

Length: 552 bp
ATGCCCTTTGAAGATTTTCATGCCCTAGTAAAGATTTTCTGCCACACCCATCATCAAGAACATCAAGATTTTCGGTCAGTGTCGGGCCCACAGACATATGGAAGTGAGCCCAAATTCACTAGCCCATTACTCAGAGCCGGTGACGTGGCACAATCTCTTGCGCGCATCATATTCCAGTCCGAGTCGAAACTCCGGCCTCCGGCGGAACCAGCTGAAACAAGAAAGAGAAGAAAAGGTAGCAGAAGACGAACCAAAACGATGTCGTCGGAAGCTGCGAAGGGAGCGACGACGGGATTCGTGGAGTGCGATCGGCTGCACCGCGCGCTGGTGGATTGTCACCGTCGGATCCCGGCGGGTCGGGCGCGGGAATCGGGTTGCCGGCACCTGAACCGCGGACTTGCCGAGTGCTTGGTGTCGGTGGCGTGCCCGGACGAGGCCGAAGCAGTTCGGAGCCTCTGCGGTAGCAGCGGCACCGGTCTGAAGCGGACTCAGTGCCAACAGGCTCAGCTCTCCCTCTCTCTCTGCCTCTCCTCTCATCAAACCAAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cmc1

Protein Analysis

183

Amino Acids

20.25

Weight (kDa)

9.46

Isoelectric Point (pI)

74.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31175 AT1G31175
malus_domestica MD05G1252500.v1.1 MD10G1233500.v1.1
prunus_persica Prupe.4G111600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0020061
rosa_roxburghii Rroxscaffold_1G00058140
rosa_samantha Rh5BG146200 Rh5DG145600
rosa_wichuraiana Rw5G012950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 381, 470
AccII CGCG 5 cut(s) 163, 321, 323, 364, 393
AciI CCGC 9 cut(s) 203, 319, 353, 364, 391, 393, 459, 468, 484
AclWI GGATC 2 cut(s) 340, 353
AcsI RAATTY 1 cut(s) 113
AcuI CTGAAG 1 cut(s) 500
AfiI CCNNNNNNNGG 3 cut(s) 199, 325, 433
AgeI ACCGGT 1 cut(s) 473
AgsI TTSAA 1 cut(s) 11
AjiI CACGTC 1 cut(s) 145
AluBI AGCT 3 cut(s) 212, 272, 508
AluI AGCT 3 cut(s) 212, 272, 508
AlwI GGATC 2 cut(s) 340, 353
AoxI GGCC 3 cut(s) 85, 194, 435
ApaI GGGCCC 1 cut(s) 89
ApeKI GCWGC 3 cut(s) 272, 313, 465
ApoI RAATTY 1 cut(s) 113
AsiGI ACCGGT 1 cut(s) 473
Asp700I GAANNNNTTC 2 cut(s) 15, 444
AspLEI GCGC 5 cut(s) 163, 165, 323, 325, 364
AspS9I GGNCC 2 cut(s) 85, 86
AsuC2I CCSGG 2 cut(s) 350, 428
AsuHPI GGTGA 2 cut(s) 152, 329
BaeGI GKGCMC 2 cut(s) 89, 428
BamHI GGATCC 1 cut(s) 345
BanI GGYRCC 2 cut(s) 381, 470
BanII GRGCYC 2 cut(s) 89, 111
BbsI GAAGAC 1 cut(s) 250
BbvI GCAGC 3 cut(s) 259, 300, 477
BccI CCATC 1 cut(s) 57
BcnI CCSGG 2 cut(s) 350, 428
BfaI CTAG 2 cut(s) 26, 120
BisI GCNGC 4 cut(s) 273, 314, 466, 469
BlpI GCTNAGC 1 cut(s) 504
BlsI GCNGC 4 cut(s) 274, 315, 467, 470
Bme1390I CCNGG 2 cut(s) 350, 428
BmgBI CACGTC 1 cut(s) 145
BmgT120I GGNCC 2 cut(s) 85, 86
BmiI GGNNCC 6 cut(s) 87, 207, 347, 383, 452, 472
BmrFI CCNGG 2 cut(s) 350, 428
BmsI GCATC 1 cut(s) 174
BpiI GAAGAC 1 cut(s) 250
Bpu1102I GCTNAGC 1 cut(s) 504
BpuMI CCSGG 2 cut(s) 350, 428
BsaJI CCNNGG 1 cut(s) 391
BsaWI WCCGGW 1 cut(s) 473
Bsc4I CCNNNNNNNGG 3 cut(s) 199, 325, 433
Bse118I RCCGGY 3 cut(s) 137, 378, 473
Bse1I ACTGG 1 cut(s) 175
BseDI CCNNGG 1 cut(s) 391
BseLI CCNNNNNNNGG 3 cut(s) 199, 325, 433
BseMII CTCAG 3 cut(s) 145, 503, 518
BseNI ACTGG 1 cut(s) 175
BsePI GCGCGC 2 cut(s) 161, 321
BseRI GAGGAG 1 cut(s) 520
BseSI GKGCMC 2 cut(s) 89, 428
BseXI GCAGC 3 cut(s) 259, 300, 477
BsgI GTGCAG 1 cut(s) 299
Bsh1236I CGCG 5 cut(s) 163, 321, 323, 364, 393
Bsh1285I CGRYCG 1 cut(s) 310
BshFI GGCC 3 cut(s) 87, 196, 437
BshNI GGYRCC 2 cut(s) 381, 470
BshTI ACCGGT 1 cut(s) 473
BsiEI CGRYCG 1 cut(s) 310
BsiSI CCGG 7 cut(s) 138, 193, 200, 350, 379, 428, 474
BslI CCNNNNNNNGG 3 cut(s) 199, 325, 433
BsnI GGCC 3 cut(s) 87, 196, 437
Bsp120I GGGCCC 1 cut(s) 85
Bsp1286I GDGCHC 3 cut(s) 89, 111, 428
Bsp143I GATC 2 cut(s) 307, 345
Bsp1720I GCTNAGC 1 cut(s) 504
BspACI CCGC 9 cut(s) 203, 319, 353, 364, 391, 393, 459, 468, 484
BspANI GGCC 3 cut(s) 87, 196, 437
BspCNI CTCAG 3 cut(s) 144, 502, 517
BspFNI CGCG 5 cut(s) 163, 321, 323, 364, 393
BspLI GGNNCC 6 cut(s) 87, 207, 347, 383, 452, 472
BspPI GGATC 2 cut(s) 340, 353
BspT107I GGYRCC 2 cut(s) 381, 470
BsrFI RCCGGY 3 cut(s) 137, 378, 473
BsrI ACTGG 1 cut(s) 175
BssAI RCCGGY 3 cut(s) 137, 378, 473
BssECI CCNNGG 1 cut(s) 391
BssHII GCGCGC 2 cut(s) 161, 321
BssMI GATC 2 cut(s) 307, 345
Bst4CI ACNGT 1 cut(s) 341
BstC8I GCNNGC 4 cut(s) 163, 323, 380, 424
BstDEI CTNAG 3 cut(s) 131, 489, 504
BstDSI CCRYGG 1 cut(s) 391
BstFNI CGCG 5 cut(s) 163, 321, 323, 364, 393
BstHHI GCGC 5 cut(s) 163, 165, 323, 325, 364
BstKTI GATC 2 cut(s) 310, 348
BstMBI GATC 2 cut(s) 307, 345
BstMCI CGRYCG 1 cut(s) 310
BstMWI GCNNNNNNNGC 5 cut(s) 209, 281, 322, 359, 465
BstSCI CCNGG 2 cut(s) 348, 426
BstSLI GKGCMC 2 cut(s) 89, 428
BstUI CGCG 5 cut(s) 163, 321, 323, 364, 393
BstV1I GCAGC 3 cut(s) 259, 300, 477
BstV2I GAAGAC 1 cut(s) 250
BstX2I RGATCY 1 cut(s) 345
BstYI RGATCY 1 cut(s) 345
BsuRI GGCC 3 cut(s) 87, 196, 437
BtgI CCRYGG 1 cut(s) 391
BtrI CACGTC 1 cut(s) 145
BtsIMutI CAGTG 2 cut(s) 84, 497
Cac8I GCNNGC 4 cut(s) 163, 323, 380, 424
CfoI GCGC 5 cut(s) 163, 165, 323, 325, 364
Cfr10I RCCGGY 3 cut(s) 137, 378, 473
Cfr13I GGNCC 2 cut(s) 85, 86
Cfr42I CCGCGG 1 cut(s) 394
CspAI ACCGGT 1 cut(s) 473
CviAII CATG 1 cut(s) 20
DdeI CTNAG 3 cut(s) 131, 489, 504
DpnI GATC 2 cut(s) 309, 347
DpnII GATC 2 cut(s) 307, 345
EciI GGCGGA 1 cut(s) 218
Eco24I GRGCYC 2 cut(s) 89, 111
Eco57I CTGAAG 1 cut(s) 500
EcoT38I GRGCYC 2 cut(s) 89, 111
FaeI CATG 1 cut(s) 23
FaiI YATR 4 cut(s) 21, 97, 99, 170
FatI CATG 1 cut(s) 19
FauI CCCGC 2 cut(s) 346, 357
FauNDI CATATG 1 cut(s) 97
Fnu4HI GCNGC 4 cut(s) 273, 314, 466, 469
FriOI GRGCYC 2 cut(s) 89, 111
Fsp4HI GCNGC 4 cut(s) 273, 314, 466, 469
FspBI CTAG 2 cut(s) 26, 120
GlaI GCGC 5 cut(s) 162, 164, 322, 324, 363
GluI GCNGC 4 cut(s) 273, 314, 466, 469
HaeIII GGCC 3 cut(s) 87, 196, 437
HapII CCGG 7 cut(s) 138, 193, 200, 350, 379, 428, 474
HhaI GCGC 5 cut(s) 163, 165, 323, 325, 364
Hin1II CATG 1 cut(s) 23
Hin6I GCGC 5 cut(s) 161, 163, 321, 323, 362
HinP1I GCGC 5 cut(s) 161, 163, 321, 323, 362
HinfI GANTC 4 cut(s) 182, 294, 368, 487
HpaII CCGG 7 cut(s) 138, 193, 200, 350, 379, 428, 474
HphI GGTGA 2 cut(s) 152, 329
Hpy188I TCNGA 6 cut(s) 134, 181, 268, 345, 450, 480
Hpy188III TCNNGA 2 cut(s) 56, 65
Hpy99I CGWCG 4 cut(s) 268, 289, 292, 345
HpyAV CCTTC 1 cut(s) 271
HpyCH4III ACNGT 1 cut(s) 341
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 1 cut(s) 316
HpyF10VI GCNNNNNNNGC 5 cut(s) 209, 281, 322, 359, 465
HpyF3I CTNAG 3 cut(s) 131, 489, 504
HpySE526I ACGT 1 cut(s) 144
Hsp92II CATG 1 cut(s) 23
HspAI GCGC 5 cut(s) 161, 163, 321, 323, 362
KroI GCCGGC 1 cut(s) 378
KroNI GCCGGC 1 cut(s) 380
KspI CCGCGG 1 cut(s) 394
Kzo9I GATC 2 cut(s) 307, 345
LmnI GCTCC 2 cut(s) 281, 450
Lsp1109I GCAGC 3 cut(s) 259, 300, 477
LweI GCATC 1 cut(s) 174
MaeI CTAG 2 cut(s) 26, 120
MaeII ACGT 1 cut(s) 144
MaeIII GTNAC 2 cut(s) 140, 335
MalI GATC 2 cut(s) 309, 347
MboI GATC 2 cut(s) 307, 345
MboII GAAGA 3 cut(s) 23, 240, 255
MflI RGATCY 1 cut(s) 345
MhlI GDGCHC 3 cut(s) 89, 111, 428
MluCI AATT 1 cut(s) 113
MlyI GAGTC 2 cut(s) 191, 481
MmeI TCCRAC 2 cut(s) 246, 323
MnlI CCTC 6 cut(s) 207, 427, 464, 524, 536, 541
MroNI GCCGGC 1 cut(s) 378
MroXI GAANNNNTTC 2 cut(s) 15, 444
MspA1I CMGCKG 3 cut(s) 212, 393, 468
MspI CCGG 7 cut(s) 138, 193, 200, 350, 379, 428, 474
MspR9I CCNGG 2 cut(s) 350, 428
MvnI CGCG 5 cut(s) 163, 321, 323, 364, 393
MwoI GCNNNNNNNGC 5 cut(s) 209, 281, 322, 359, 465
NaeI GCCGGC 1 cut(s) 380
NciI CCSGG 2 cut(s) 350, 428
NdeI CATATG 1 cut(s) 97
NdeII GATC 2 cut(s) 307, 345
NgoMIV GCCGGC 1 cut(s) 378
NlaIII CATG 1 cut(s) 23
NlaIV GGNNCC 6 cut(s) 87, 207, 347, 383, 452, 472
NmeAIII GCCGAG 1 cut(s) 427
NmuCI GTSAC 2 cut(s) 140, 335
PauI GCGCGC 2 cut(s) 161, 321
PcsI WCGNNNNNNNCGW 2 cut(s) 272, 303
PdiI GCCGGC 1 cut(s) 380
PdmI GAANNNNTTC 2 cut(s) 15, 444
PfeI GAWTC 2 cut(s) 294, 368
PinAI ACCGGT 1 cut(s) 473
PkrI GCNGC 4 cut(s) 274, 315, 467, 470
Ple19I CGATCG 1 cut(s) 310
PleI GAGTC 2 cut(s) 190, 481
PpsI GAGTC 2 cut(s) 190, 481
PspN4I GGNNCC 6 cut(s) 87, 207, 347, 383, 452, 472
PspOMI GGGCCC 1 cut(s) 85
PspPI GGNCC 2 cut(s) 85, 86
PsuI RGATCY 1 cut(s) 345
PteI GCGCGC 2 cut(s) 161, 321
PvuI CGATCG 1 cut(s) 310
PvuII CAGCTG 1 cut(s) 212
SacII CCGCGG 1 cut(s) 394
SatI GCNGC 4 cut(s) 273, 314, 466, 469
Sau3AI GATC 2 cut(s) 307, 345
Sau96I GGNCC 2 cut(s) 85, 86
SchI GAGTC 2 cut(s) 191, 481
ScrFI CCNGG 2 cut(s) 350, 428
SduI GDGCHC 3 cut(s) 89, 111, 428
SetI ASST 6 cut(s) 147, 214, 238, 274, 387, 510
SfaNI GCATC 1 cut(s) 174
Sfr303I CCGCGG 1 cut(s) 394
SgrBI CCGCGG 1 cut(s) 394
Sse9I AATT 1 cut(s) 113
SsiI CCGC 9 cut(s) 203, 319, 353, 364, 391, 393, 459, 468, 484
SspMI CTAG 2 cut(s) 26, 120
StyD4I CCNGG 2 cut(s) 348, 426
TaaI ACNGT 1 cut(s) 341
TaiI ACGT 1 cut(s) 147
TaqI TCGA 1 cut(s) 185
TaqII GACCGA 1 cut(s) 63
TasI AATT 1 cut(s) 113
TauI GCSGC 1 cut(s) 471
TfiI GAWTC 2 cut(s) 294, 368
TscAI CASTG 2 cut(s) 84, 497
TseFI GTSAC 2 cut(s) 140, 335
TseI GCWGC 3 cut(s) 272, 313, 465
Tsp45I GTSAC 2 cut(s) 140, 335
TspDTI ATGAA 1 cut(s) 8
TspRI CASTG 2 cut(s) 84, 497
XapI RAATTY 1 cut(s) 113
XmnI GAANNNNTTC 2 cut(s) 15, 444
XspI CTAG 2 cut(s) 26, 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.