MD05G1252500.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0018318
Physical Location & Seq
Reverse (-)
38392072 .. 38392383
312 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1252500.v1.1.491

Sequence Viewer

Length: 312 bp
ATGTCAGAAGCGAAGCAACCGACAACGACGGCGAAATTGAGGGAGTGCGATCGGTTGCAGCGCGCGCTAACGGATTGTCACAAGCGGATCGGGCCGGGTCGGGGTCGGGAGGCGGCGTGCCGGCACCTGAACCGGGGATTGGCGGAGTGCTTGGTGTCGGTGGCGTGCCCGGAAGAGTGGGAAGCAGTTCGGAGCCTGTGCGGGAGTGGAGGAACGGGGCTGAAGCGGAGCCAGTGCCAGGAGGCTCAGCTGTCGCTCTCGGTCTGCCTGTCGTCGCACCAACACCGACTCAGCTCAAATGCAGATCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cmc1

Protein Analysis

104

Amino Acids

11.23

Weight (kDa)

8.73

Isoelectric Point (pI)

76.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31175 AT1G31175
malus_domestica MD05G1252500.v1.1 MD10G1233500.v1.1
prunus_persica Prupe.4G111600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0020061
rosa_roxburghii Rroxscaffold_1G00058140
rosa_samantha Rh5BG146200 Rh5DG145600
rosa_wichuraiana Rw5G012950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 123
AccII CGCG 2 cut(s) 63, 65
AciI CCGC 5 cut(s) 85, 113, 143, 201, 226
AclWI GGATC 1 cut(s) 95
AcuI CTGAAG 1 cut(s) 242
AfiI CCNNNNNNNGG 4 cut(s) 101, 133, 139, 238
AjnI CCWGG 1 cut(s) 237
AjuI GAANNNNNNNTTGG 2 cut(s) 122, 154
AluBI AGCT 2 cut(s) 250, 294
AluI AGCT 2 cut(s) 250, 294
AlwI GGATC 1 cut(s) 95
AoxI GGCC 1 cut(s) 92
ApeKI GCWGC 1 cut(s) 58
Asp700I GAANNNNTTC 1 cut(s) 186
AspLEI GCGC 3 cut(s) 63, 65, 67
AspS9I GGNCC 1 cut(s) 92
AsuC2I CCSGG 3 cut(s) 96, 134, 170
BaeGI GKGCMC 1 cut(s) 170
BanI GGYRCC 1 cut(s) 123
BbvI GCAGC 1 cut(s) 70
BceAI ACGGC 1 cut(s) 45
BciT130I CCWGG 1 cut(s) 239
BcnI CCSGG 3 cut(s) 96, 134, 170
BisI GCNGC 2 cut(s) 59, 114
BlpI GCTNAGC 1 cut(s) 246
BlsI GCNGC 2 cut(s) 60, 115
Bme1390I CCNGG 4 cut(s) 96, 134, 170, 239
BmgT120I GGNCC 1 cut(s) 92
BmiI GGNNCC 3 cut(s) 125, 194, 230
BmrFI CCNGG 4 cut(s) 96, 134, 170, 239
Bpu1102I GCTNAGC 1 cut(s) 246
BpuMI CCSGG 3 cut(s) 96, 134, 170
BsaJI CCNNGG 1 cut(s) 133
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bsc4I CCNNNNNNNGG 4 cut(s) 101, 133, 139, 238
Bse118I RCCGGY 1 cut(s) 120
Bse1I ACTGG 1 cut(s) 232
BseBI CCWGG 1 cut(s) 239
BseDI CCNNGG 1 cut(s) 133
BseLI CCNNNNNNNGG 4 cut(s) 101, 133, 139, 238
BseMII CTCAG 2 cut(s) 260, 304
BseNI ACTGG 1 cut(s) 232
BsePI GCGCGC 2 cut(s) 61, 63
BseSI GKGCMC 1 cut(s) 170
BseXI GCAGC 1 cut(s) 70
Bsh1236I CGCG 2 cut(s) 63, 65
Bsh1285I CGRYCG 1 cut(s) 52
BshFI GGCC 1 cut(s) 94
BshNI GGYRCC 1 cut(s) 123
BsiEI CGRYCG 1 cut(s) 52
BsiSI CCGG 4 cut(s) 95, 121, 133, 170
BslI CCNNNNNNNGG 4 cut(s) 101, 133, 139, 238
BsnI GGCC 1 cut(s) 94
Bsp1286I GDGCHC 1 cut(s) 170
Bsp143I GATC 3 cut(s) 49, 87, 304
Bsp1720I GCTNAGC 1 cut(s) 246
BspACI CCGC 5 cut(s) 85, 113, 143, 201, 226
BspANI GGCC 1 cut(s) 94
BspCNI CTCAG 2 cut(s) 259, 303
BspFNI CGCG 2 cut(s) 63, 65
BspLI GGNNCC 3 cut(s) 125, 194, 230
BspPI GGATC 1 cut(s) 95
BspT107I GGYRCC 1 cut(s) 123
BsrFI RCCGGY 1 cut(s) 120
BsrI ACTGG 1 cut(s) 232
BssAI RCCGGY 1 cut(s) 120
BssECI CCNNGG 1 cut(s) 133
BssHII GCGCGC 2 cut(s) 61, 63
BssMI GATC 3 cut(s) 49, 87, 304
Bst2UI CCWGG 1 cut(s) 239
Bst6I CTCTTC 1 cut(s) 168
BstC8I GCNNGC 5 cut(s) 63, 65, 118, 122, 166
BstDEI CTNAG 2 cut(s) 246, 290
BstFNI CGCG 2 cut(s) 63, 65
BstHHI GCGC 3 cut(s) 63, 65, 67
BstKTI GATC 3 cut(s) 52, 90, 307
BstMBI GATC 3 cut(s) 49, 87, 304
BstMCI CGRYCG 1 cut(s) 52
BstMWI GCNNNNNNNGC 2 cut(s) 64, 91
BstNI CCWGG 1 cut(s) 239
BstSCI CCNGG 4 cut(s) 94, 132, 168, 237
BstSLI GKGCMC 1 cut(s) 170
BstUI CGCG 2 cut(s) 63, 65
BstV1I GCAGC 1 cut(s) 70
BsuRI GGCC 1 cut(s) 94
BtsIMutI CAGTG 1 cut(s) 239
Cac8I GCNNGC 5 cut(s) 63, 65, 118, 122, 166
CfoI GCGC 3 cut(s) 63, 65, 67
Cfr10I RCCGGY 1 cut(s) 120
Cfr13I GGNCC 1 cut(s) 92
CviJI RGCY 7 cut(s) 94, 195, 220, 231, 245, 250, 294
CviKI_1 RGCY 7 cut(s) 94, 195, 220, 231, 245, 250, 294
DdeI CTNAG 2 cut(s) 246, 290
DpnI GATC 3 cut(s) 51, 89, 306
DpnII GATC 3 cut(s) 49, 87, 304
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
EciI GGCGGA 1 cut(s) 158
Eco57I CTGAAG 1 cut(s) 242
EcoRII CCWGG 1 cut(s) 237
FauI CCCGC 1 cut(s) 194
Fnu4HI GCNGC 2 cut(s) 59, 114
Fsp4HI GCNGC 2 cut(s) 59, 114
GlaI GCGC 3 cut(s) 62, 64, 66
GluI GCNGC 2 cut(s) 59, 114
HaeIII GGCC 1 cut(s) 94
HapII CCGG 4 cut(s) 95, 121, 133, 170
HhaI GCGC 3 cut(s) 63, 65, 67
Hin6I GCGC 3 cut(s) 61, 63, 65
HinP1I GCGC 3 cut(s) 61, 63, 65
HinfI GANTC 1 cut(s) 288
HpaII CCGG 4 cut(s) 95, 121, 133, 170
Hpy188I TCNGA 2 cut(s) 7, 192
Hpy188III TCNNGA 1 cut(s) 107
Hpy99I CGWCG 2 cut(s) 31, 277
HpyCH4V TGCA 2 cut(s) 58, 302
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 91
HpyF3I CTNAG 2 cut(s) 246, 290
HspAI GCGC 3 cut(s) 61, 63, 65
KroI GCCGGC 1 cut(s) 120
KroNI GCCGGC 1 cut(s) 122
Kzo9I GATC 3 cut(s) 49, 87, 304
LmnI GCTCC 2 cut(s) 192, 228
Lsp1109I GCAGC 1 cut(s) 70
MaeIII GTNAC 1 cut(s) 77
MalI GATC 3 cut(s) 51, 89, 306
MboI GATC 3 cut(s) 49, 87, 304
MboII GAAGA 1 cut(s) 185
MhlI GDGCHC 1 cut(s) 170
MluCI AATT 1 cut(s) 35
MlyI GAGTC 1 cut(s) 282
MnlI CCTC 4 cut(s) 33, 103, 203, 235
MroNI GCCGGC 1 cut(s) 120
MroXI GAANNNNTTC 1 cut(s) 186
MspA1I CMGCKG 1 cut(s) 250
MspI CCGG 4 cut(s) 95, 121, 133, 170
MspR9I CCNGG 4 cut(s) 96, 134, 170, 239
MvaI CCWGG 1 cut(s) 239
MvnI CGCG 2 cut(s) 63, 65
MwoI GCNNNNNNNGC 2 cut(s) 64, 91
NaeI GCCGGC 1 cut(s) 122
NciI CCSGG 3 cut(s) 96, 134, 170
NdeII GATC 3 cut(s) 49, 87, 304
NgoMIV GCCGGC 1 cut(s) 120
NlaIV GGNNCC 3 cut(s) 125, 194, 230
NmuCI GTSAC 1 cut(s) 77
PauI GCGCGC 2 cut(s) 61, 63
PdiI GCCGGC 1 cut(s) 122
PdmI GAANNNNTTC 1 cut(s) 186
PkrI GCNGC 2 cut(s) 60, 115
Ple19I CGATCG 1 cut(s) 52
PleI GAGTC 1 cut(s) 282
PpsI GAGTC 1 cut(s) 282
Psp6I CCWGG 1 cut(s) 237
PspGI CCWGG 1 cut(s) 237
PspN4I GGNNCC 3 cut(s) 125, 194, 230
PspPI GGNCC 1 cut(s) 92
PteI GCGCGC 2 cut(s) 61, 63
PvuI CGATCG 1 cut(s) 52
PvuII CAGCTG 1 cut(s) 250
SatI GCNGC 2 cut(s) 59, 114
Sau3AI GATC 3 cut(s) 49, 87, 304
Sau96I GGNCC 1 cut(s) 92
SchI GAGTC 1 cut(s) 282
ScrFI CCNGG 4 cut(s) 96, 134, 170, 239
SduI GDGCHC 1 cut(s) 170
SetI ASST 3 cut(s) 129, 252, 296
Sse9I AATT 1 cut(s) 35
SsiI CCGC 5 cut(s) 85, 113, 143, 201, 226
StyD4I CCNGG 4 cut(s) 94, 132, 168, 237
TaqII GACCGA 1 cut(s) 250
TasI AATT 1 cut(s) 35
TauI GCSGC 1 cut(s) 116
TscAI CASTG 1 cut(s) 239
TseFI GTSAC 1 cut(s) 77
TseI GCWGC 1 cut(s) 58
Tsp45I GTSAC 1 cut(s) 77
TspGWI ACGGA 1 cut(s) 86
TspRI CASTG 1 cut(s) 239
XmnI GAANNNNTTC 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.