Rh5DG145600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0018318
Physical Location & Seq
Forward (+)
14896096 .. 14896587
492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG145600.1

Sequence Viewer

Length: 492 bp
ATGGGAGTGAGCCCAAATTCACTAGCCCATTACTCAGAGGGTGTGTGTGTATATATACCCCACTTACATTTTCAAAGAGGTGACGTGGCACAACCTCTGCGCGCATCATATTCCAGTCCGAGTCGAAACTCCGGCCTCCGGCGGAACCAGCTGAAACAAGAAAGAGAAGACAAAGGTAGCAGAAGACGAACCAAAACGATGTCGTCGGAAGCTGCGAAGGGAGCGACGACGGGATTCGTGGAGTGCGATCGGCTGCACCGCGCGCTGGTGGATTGTCACCGTCGGATCCCGGCGGGTCGGGCGCGGGAATCGGGTTGCCGGCACCTGAACCGCGGACTTGCCGAGTGCTTGGTGTCGGTGGCGTGCCCGGACGAGGCCGAAGCCGTTCGGAGCCTCTGCGGCAGCAGCGGCACCGGTCTGAAGCGGACTCAGTGCCAACAGGCGCAGCTCTCCCTCTCTCTCTGCCTCTCCTCTCACCAAACCAAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cmc1

Protein Analysis

163

Amino Acids

17.85

Weight (kDa)

9.49

Isoelectric Point (pI)

66.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31175 AT1G31175
malus_domestica MD05G1252500.v1.1 MD10G1233500.v1.1
prunus_persica Prupe.4G111600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0020061
rosa_roxburghii Rroxscaffold_1G00058140
rosa_samantha Rh5BG146200 Rh5DG145600
rosa_wichuraiana Rw5G012950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 321, 410
AccII CGCG 5 cut(s) 102, 261, 263, 304, 333
AciI CCGC 9 cut(s) 142, 259, 293, 304, 331, 333, 399, 408, 424
AclWI GGATC 2 cut(s) 280, 293
AcsI RAATTY 1 cut(s) 16
AcuI CTGAAG 1 cut(s) 440
AfiI CCNNNNNNNGG 3 cut(s) 138, 265, 373
AgeI ACCGGT 1 cut(s) 413
AgsI TTSAA 1 cut(s) 74
AjiI CACGTC 1 cut(s) 85
AluBI AGCT 3 cut(s) 151, 212, 448
AluI AGCT 3 cut(s) 151, 212, 448
AlwI GGATC 2 cut(s) 280, 293
AoxI GGCC 2 cut(s) 133, 375
ApeKI GCWGC 5 cut(s) 212, 253, 402, 405, 445
ApoI RAATTY 1 cut(s) 16
AsiGI ACCGGT 1 cut(s) 413
Asp700I GAANNNNTTC 1 cut(s) 384
AspLEI GCGC 6 cut(s) 102, 104, 263, 265, 304, 445
AsuC2I CCSGG 2 cut(s) 290, 368
AsuHPI GGTGA 3 cut(s) 92, 269, 467
BaeGI GKGCMC 1 cut(s) 368
BamHI GGATCC 1 cut(s) 285
BanI GGYRCC 2 cut(s) 321, 410
BanII GRGCYC 1 cut(s) 14
BbsI GAAGAC 2 cut(s) 174, 190
BbvI GCAGC 5 cut(s) 199, 240, 414, 417, 457
BceAI ACGGC 1 cut(s) 368
BcnI CCSGG 2 cut(s) 290, 368
BfaI CTAG 1 cut(s) 23
BglI GCCNNNNNGGC 1 cut(s) 399
BisI GCNGC 7 cut(s) 213, 254, 400, 403, 406, 409, 446
BlsI GCNGC 7 cut(s) 214, 255, 401, 404, 407, 410, 447
Bme1390I CCNGG 2 cut(s) 290, 368
BmgBI CACGTC 1 cut(s) 85
BmiI GGNNCC 5 cut(s) 146, 287, 323, 392, 412
BmrFI CCNGG 2 cut(s) 290, 368
BmsI GCATC 1 cut(s) 113
BpiI GAAGAC 2 cut(s) 174, 190
BpuMI CCSGG 2 cut(s) 290, 368
BsaJI CCNNGG 1 cut(s) 331
BsaWI WCCGGW 1 cut(s) 413
Bsc4I CCNNNNNNNGG 3 cut(s) 138, 265, 373
Bse118I RCCGGY 2 cut(s) 318, 413
Bse1I ACTGG 1 cut(s) 114
BseDI CCNNGG 1 cut(s) 331
BseLI CCNNNNNNNGG 3 cut(s) 138, 265, 373
BseMII CTCAG 2 cut(s) 48, 443
BseNI ACTGG 1 cut(s) 114
BsePI GCGCGC 2 cut(s) 100, 261
BseRI GAGGAG 1 cut(s) 460
BseSI GKGCMC 1 cut(s) 368
BseXI GCAGC 5 cut(s) 199, 240, 414, 417, 457
BsgI GTGCAG 1 cut(s) 239
Bsh1236I CGCG 5 cut(s) 102, 261, 263, 304, 333
Bsh1285I CGRYCG 1 cut(s) 250
BshFI GGCC 2 cut(s) 135, 377
BshNI GGYRCC 2 cut(s) 321, 410
BshTI ACCGGT 1 cut(s) 413
BsiEI CGRYCG 1 cut(s) 250
BsiSI CCGG 6 cut(s) 132, 139, 290, 319, 368, 414
BslI CCNNNNNNNGG 3 cut(s) 138, 265, 373
BsnI GGCC 2 cut(s) 135, 377
Bsp1286I GDGCHC 2 cut(s) 14, 368
Bsp143I GATC 2 cut(s) 247, 285
BspACI CCGC 9 cut(s) 142, 259, 293, 304, 331, 333, 399, 408, 424
BspANI GGCC 2 cut(s) 135, 377
BspCNI CTCAG 2 cut(s) 47, 442
BspFNI CGCG 5 cut(s) 102, 261, 263, 304, 333
BspLI GGNNCC 5 cut(s) 146, 287, 323, 392, 412
BspPI GGATC 2 cut(s) 280, 293
BspT107I GGYRCC 2 cut(s) 321, 410
BsrFI RCCGGY 2 cut(s) 318, 413
BsrI ACTGG 1 cut(s) 114
BssAI RCCGGY 2 cut(s) 318, 413
BssECI CCNNGG 1 cut(s) 331
BssHII GCGCGC 2 cut(s) 100, 261
BssMI GATC 2 cut(s) 247, 285
Bst4CI ACNGT 1 cut(s) 281
BstC8I GCNNGC 4 cut(s) 102, 263, 320, 364
BstDEI CTNAG 2 cut(s) 34, 429
BstDSI CCRYGG 1 cut(s) 331
BstFNI CGCG 5 cut(s) 102, 261, 263, 304, 333
BstHHI GCGC 6 cut(s) 102, 104, 263, 265, 304, 445
BstKTI GATC 2 cut(s) 250, 288
BstMBI GATC 2 cut(s) 247, 285
BstMCI CGRYCG 1 cut(s) 250
BstMWI GCNNNNNNNGC 7 cut(s) 148, 221, 262, 299, 399, 405, 408
BstSCI CCNGG 2 cut(s) 288, 366
BstSLI GKGCMC 1 cut(s) 368
BstUI CGCG 5 cut(s) 102, 261, 263, 304, 333
BstV1I GCAGC 5 cut(s) 199, 240, 414, 417, 457
BstV2I GAAGAC 2 cut(s) 174, 190
BstX2I RGATCY 1 cut(s) 285
BstYI RGATCY 1 cut(s) 285
BsuRI GGCC 2 cut(s) 135, 377
BtgI CCRYGG 1 cut(s) 331
BtrI CACGTC 1 cut(s) 85
BtsIMutI CAGTG 1 cut(s) 437
Cac8I GCNNGC 4 cut(s) 102, 263, 320, 364
CfoI GCGC 6 cut(s) 102, 104, 263, 265, 304, 445
Cfr10I RCCGGY 2 cut(s) 318, 413
Cfr42I CCGCGG 1 cut(s) 334
CspAI ACCGGT 1 cut(s) 413
DdeI CTNAG 2 cut(s) 34, 429
DpnI GATC 2 cut(s) 249, 287
DpnII GATC 2 cut(s) 247, 285
EciI GGCGGA 1 cut(s) 157
Eco24I GRGCYC 1 cut(s) 14
Eco57I CTGAAG 1 cut(s) 440
EcoT38I GRGCYC 1 cut(s) 14
FaiI YATR 4 cut(s) 52, 54, 56, 109
FauI CCCGC 2 cut(s) 286, 297
Fnu4HI GCNGC 7 cut(s) 213, 254, 400, 403, 406, 409, 446
FriOI GRGCYC 1 cut(s) 14
Fsp4HI GCNGC 7 cut(s) 213, 254, 400, 403, 406, 409, 446
FspBI CTAG 1 cut(s) 23
GlaI GCGC 6 cut(s) 101, 103, 262, 264, 303, 444
GluI GCNGC 7 cut(s) 213, 254, 400, 403, 406, 409, 446
HaeIII GGCC 2 cut(s) 135, 377
HapII CCGG 6 cut(s) 132, 139, 290, 319, 368, 414
HhaI GCGC 6 cut(s) 102, 104, 263, 265, 304, 445
Hin6I GCGC 6 cut(s) 100, 102, 261, 263, 302, 443
HinP1I GCGC 6 cut(s) 100, 102, 261, 263, 302, 443
HinfI GANTC 4 cut(s) 121, 234, 308, 427
HpaII CCGG 6 cut(s) 132, 139, 290, 319, 368, 414
HphI GGTGA 3 cut(s) 92, 269, 467
Hpy188I TCNGA 6 cut(s) 37, 120, 208, 285, 390, 420
Hpy99I CGWCG 4 cut(s) 208, 229, 232, 285
HpyAV CCTTC 1 cut(s) 211
HpyCH4III ACNGT 1 cut(s) 281
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 1 cut(s) 256
HpyF10VI GCNNNNNNNGC 7 cut(s) 148, 221, 262, 299, 399, 405, 408
HpyF3I CTNAG 2 cut(s) 34, 429
HpySE526I ACGT 1 cut(s) 84
HspAI GCGC 6 cut(s) 100, 102, 261, 263, 302, 443
KroI GCCGGC 1 cut(s) 318
KroNI GCCGGC 1 cut(s) 320
KspI CCGCGG 1 cut(s) 334
Kzo9I GATC 2 cut(s) 247, 285
LmnI GCTCC 2 cut(s) 221, 390
Lsp1109I GCAGC 5 cut(s) 199, 240, 414, 417, 457
LweI GCATC 1 cut(s) 113
MaeI CTAG 1 cut(s) 23
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 2 cut(s) 80, 275
MalI GATC 2 cut(s) 249, 287
MboI GATC 2 cut(s) 247, 285
MboII GAAGA 2 cut(s) 179, 195
MflI RGATCY 1 cut(s) 285
MhlI GDGCHC 2 cut(s) 14, 368
MluCI AATT 1 cut(s) 16
MlyI GAGTC 2 cut(s) 130, 421
MmeI TCCRAC 2 cut(s) 186, 263
MnlI CCTC 9 cut(s) 31, 71, 105, 146, 367, 404, 464, 476, 481
MroNI GCCGGC 1 cut(s) 318
MroXI GAANNNNTTC 1 cut(s) 384
MspA1I CMGCKG 3 cut(s) 151, 333, 408
MspI CCGG 6 cut(s) 132, 139, 290, 319, 368, 414
MspR9I CCNGG 2 cut(s) 290, 368
MvnI CGCG 5 cut(s) 102, 261, 263, 304, 333
MwoI GCNNNNNNNGC 7 cut(s) 148, 221, 262, 299, 399, 405, 408
NaeI GCCGGC 1 cut(s) 320
NciI CCSGG 2 cut(s) 290, 368
NdeII GATC 2 cut(s) 247, 285
NgoMIV GCCGGC 1 cut(s) 318
NlaIV GGNNCC 5 cut(s) 146, 287, 323, 392, 412
NmeAIII GCCGAG 1 cut(s) 367
NmuCI GTSAC 2 cut(s) 80, 275
PauI GCGCGC 2 cut(s) 100, 261
PcsI WCGNNNNNNNCGW 2 cut(s) 212, 243
PdiI GCCGGC 1 cut(s) 320
PdmI GAANNNNTTC 1 cut(s) 384
PfeI GAWTC 2 cut(s) 234, 308
PinAI ACCGGT 1 cut(s) 413
PkrI GCNGC 7 cut(s) 214, 255, 401, 404, 407, 410, 447
Ple19I CGATCG 1 cut(s) 250
PleI GAGTC 2 cut(s) 129, 421
PpsI GAGTC 2 cut(s) 129, 421
PspN4I GGNNCC 5 cut(s) 146, 287, 323, 392, 412
PsuI RGATCY 1 cut(s) 285
PteI GCGCGC 2 cut(s) 100, 261
PvuI CGATCG 1 cut(s) 250
PvuII CAGCTG 1 cut(s) 151
SacII CCGCGG 1 cut(s) 334
SatI GCNGC 7 cut(s) 213, 254, 400, 403, 406, 409, 446
Sau3AI GATC 2 cut(s) 247, 285
SchI GAGTC 2 cut(s) 130, 421
ScrFI CCNGG 2 cut(s) 290, 368
SduI GDGCHC 2 cut(s) 14, 368
SetI ASST 8 cut(s) 82, 87, 97, 153, 178, 214, 327, 450
SfaNI GCATC 1 cut(s) 113
Sfr303I CCGCGG 1 cut(s) 334
SgrBI CCGCGG 1 cut(s) 334
Sse9I AATT 1 cut(s) 16
SsiI CCGC 9 cut(s) 142, 259, 293, 304, 331, 333, 399, 408, 424
SspMI CTAG 1 cut(s) 23
StyD4I CCNGG 2 cut(s) 288, 366
TaaI ACNGT 1 cut(s) 281
TaiI ACGT 1 cut(s) 87
TaqI TCGA 1 cut(s) 124
TasI AATT 1 cut(s) 16
TauI GCSGC 2 cut(s) 402, 411
TfiI GAWTC 2 cut(s) 234, 308
TscAI CASTG 1 cut(s) 437
TseFI GTSAC 2 cut(s) 80, 275
TseI GCWGC 5 cut(s) 212, 253, 402, 405, 445
Tsp45I GTSAC 2 cut(s) 80, 275
TspRI CASTG 1 cut(s) 437
XapI RAATTY 1 cut(s) 16
XmnI GAANNNNTTC 1 cut(s) 384
XspI CTAG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.