Prupe.4G111600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0018318
Physical Location & Seq
Forward (+)
5915061 .. 5915950
890 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G111600.1

Sequence Viewer

Length: 300 bp
ATGCCTGAAGAGAAGCAACCGGCGATGACGAAATGCGATCGGCTGCAAAACGCATTGATGGATTGCCACAGGCGGATTGGGCCGGGTCTGGCTCGCGAGGCGGCGTGCCGGCACTTGAACCGGGGTCTGGCGGAGTGCCTGGTGTCAGTGGCGTGCCCGGAGGAGTGGGAAGCGGTTCGGAGCCTGTGCGGTAGTGGAGGAACGAGTCTGAAGCGGTCGCAGTGCCAAGAGGCTCAGCTCTCGCTCTCAGTCTGCCTCTCCTCTCACCAACACCAACGCAACAACCCAAATGCAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cmc1

Protein Analysis

100

Amino Acids

10.9

Weight (kDa)

7.59

Isoelectric Point (pI)

79.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31175 AT1G31175
malus_domestica MD05G1252500.v1.1 MD10G1233500.v1.1
prunus_persica Prupe.4G111600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0020061
rosa_roxburghii Rroxscaffold_1G00058140
rosa_samantha Rh5BG146200 Rh5DG145600
rosa_wichuraiana Rw5G012950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 96
AciI CCGC 6 cut(s) 73, 101, 131, 173, 189, 214
AcuI CTGAAG 2 cut(s) 27, 230
AfiI CCNNNNNNNGG 1 cut(s) 127
AgsI TTSAA 1 cut(s) 118
AjnI CCWGG 1 cut(s) 138
AluBI AGCT 1 cut(s) 238
AluI AGCT 1 cut(s) 238
AoxI GGCC 1 cut(s) 80
ApeKI GCWGC 1 cut(s) 43
Asp700I GAANNNNTTC 1 cut(s) 174
AspS9I GGNCC 1 cut(s) 80
AsuC2I CCSGG 3 cut(s) 84, 122, 158
AsuHPI GGTGA 1 cut(s) 257
BaeGI GKGCMC 1 cut(s) 158
BbvI GCAGC 1 cut(s) 30
BccI CCATC 1 cut(s) 52
BciT130I CCWGG 1 cut(s) 140
BcnI CCSGG 3 cut(s) 84, 122, 158
BisI GCNGC 2 cut(s) 44, 102
BlpI GCTNAGC 1 cut(s) 234
BlsI GCNGC 2 cut(s) 45, 103
Bme1390I CCNGG 4 cut(s) 84, 122, 140, 158
BmgT120I GGNCC 1 cut(s) 80
BmiI GGNNCC 1 cut(s) 182
BmrFI CCNGG 4 cut(s) 84, 122, 140, 158
Bpu1102I GCTNAGC 1 cut(s) 234
BpuMI CCSGG 3 cut(s) 84, 122, 158
BsaJI CCNNGG 1 cut(s) 121
Bsc4I CCNNNNNNNGG 1 cut(s) 127
Bse118I RCCGGY 2 cut(s) 19, 108
BseBI CCWGG 1 cut(s) 140
BseDI CCNNGG 1 cut(s) 121
BseLI CCNNNNNNNGG 1 cut(s) 127
BseMII CTCAG 2 cut(s) 248, 261
BseRI GAGGAG 2 cut(s) 176, 250
BseSI GKGCMC 1 cut(s) 158
BseXI GCAGC 1 cut(s) 30
Bsh1236I CGCG 1 cut(s) 96
Bsh1285I CGRYCG 2 cut(s) 40, 218
BshFI GGCC 1 cut(s) 82
BsiEI CGRYCG 2 cut(s) 40, 218
BsiSI CCGG 5 cut(s) 20, 83, 109, 121, 158
BslI CCNNNNNNNGG 1 cut(s) 127
BsnI GGCC 1 cut(s) 82
Bsp1286I GDGCHC 1 cut(s) 158
Bsp143I GATC 1 cut(s) 37
Bsp1720I GCTNAGC 1 cut(s) 234
Bsp68I TCGCGA 1 cut(s) 96
BspACI CCGC 6 cut(s) 73, 101, 131, 173, 189, 214
BspANI GGCC 1 cut(s) 82
BspCNI CTCAG 2 cut(s) 247, 260
BspFNI CGCG 1 cut(s) 96
BspLI GGNNCC 1 cut(s) 182
BsrFI RCCGGY 2 cut(s) 19, 108
BssAI RCCGGY 2 cut(s) 19, 108
BssECI CCNNGG 1 cut(s) 121
BssMI GATC 1 cut(s) 37
Bst2UI CCWGG 1 cut(s) 140
Bst6I CTCTTC 1 cut(s) 3
BstC8I GCNNGC 4 cut(s) 94, 106, 110, 154
BstDEI CTNAG 2 cut(s) 234, 247
BstFNI CGCG 1 cut(s) 96
BstKTI GATC 1 cut(s) 40
BstMBI GATC 1 cut(s) 37
BstMCI CGRYCG 2 cut(s) 40, 218
BstMWI GCNNNNNNNGC 2 cut(s) 79, 98
BstNI CCWGG 1 cut(s) 140
BstSCI CCNGG 4 cut(s) 82, 120, 138, 156
BstSLI GKGCMC 1 cut(s) 158
BstUI CGCG 1 cut(s) 96
BstV1I GCAGC 1 cut(s) 30
BsuRI GGCC 1 cut(s) 82
BtgZI GCGATG 1 cut(s) 38
BtsI GCAGTG 1 cut(s) 227
BtsIMutI CAGTG 2 cut(s) 153, 227
BtuMI TCGCGA 1 cut(s) 96
Cac8I GCNNGC 4 cut(s) 94, 106, 110, 154
Cfr10I RCCGGY 2 cut(s) 19, 108
Cfr13I GGNCC 1 cut(s) 80
CviJI RGCY 6 cut(s) 43, 82, 92, 183, 233, 238
CviKI_1 RGCY 6 cut(s) 43, 82, 92, 183, 233, 238
DdeI CTNAG 2 cut(s) 234, 247
DpnI GATC 1 cut(s) 39
DpnII GATC 1 cut(s) 37
Eam1104I CTCTTC 1 cut(s) 3
EarI CTCTTC 1 cut(s) 3
EciI GGCGGA 2 cut(s) 88, 146
Eco57I CTGAAG 2 cut(s) 27, 230
EcoRII CCWGG 1 cut(s) 138
Fnu4HI GCNGC 2 cut(s) 44, 102
Fsp4HI GCNGC 2 cut(s) 44, 102
GluI GCNGC 2 cut(s) 44, 102
HaeIII GGCC 1 cut(s) 82
HapII CCGG 5 cut(s) 20, 83, 109, 121, 158
HinfI GANTC 1 cut(s) 205
HpaII CCGG 5 cut(s) 20, 83, 109, 121, 158
HphI GGTGA 1 cut(s) 257
Hpy188I TCNGA 2 cut(s) 180, 210
Hpy188III TCNNGA 1 cut(s) 95
HpyCH4V TGCA 2 cut(s) 46, 293
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 98
HpyF3I CTNAG 2 cut(s) 234, 247
KroI GCCGGC 1 cut(s) 108
KroNI GCCGGC 1 cut(s) 110
Kzo9I GATC 1 cut(s) 37
LmnI GCTCC 1 cut(s) 180
Lsp1109I GCAGC 1 cut(s) 30
MalI GATC 1 cut(s) 39
MboI GATC 1 cut(s) 37
MboII GAAGA 1 cut(s) 20
MhlI GDGCHC 1 cut(s) 158
MlyI GAGTC 1 cut(s) 214
MnlI CCTC 6 cut(s) 91, 154, 191, 223, 266, 271
MroNI GCCGGC 1 cut(s) 108
MroXI GAANNNNTTC 1 cut(s) 174
MspI CCGG 5 cut(s) 20, 83, 109, 121, 158
MspR9I CCNGG 4 cut(s) 84, 122, 140, 158
MvaI CCWGG 1 cut(s) 140
MvnI CGCG 1 cut(s) 96
MwoI GCNNNNNNNGC 2 cut(s) 79, 98
NaeI GCCGGC 1 cut(s) 110
NciI CCSGG 3 cut(s) 84, 122, 158
NdeII GATC 1 cut(s) 37
NgoMIV GCCGGC 1 cut(s) 108
NlaIV GGNNCC 1 cut(s) 182
NruI TCGCGA 1 cut(s) 96
PdiI GCCGGC 1 cut(s) 110
PdmI GAANNNNTTC 1 cut(s) 174
PkrI GCNGC 2 cut(s) 45, 103
Ple19I CGATCG 1 cut(s) 40
PleI GAGTC 1 cut(s) 213
PpsI GAGTC 1 cut(s) 213
Psp6I CCWGG 1 cut(s) 138
PspGI CCWGG 1 cut(s) 138
PspN4I GGNNCC 1 cut(s) 182
PspPI GGNCC 1 cut(s) 80
PvuI CGATCG 1 cut(s) 40
RruI TCGCGA 1 cut(s) 96
SatI GCNGC 2 cut(s) 44, 102
Sau3AI GATC 1 cut(s) 37
Sau96I GGNCC 1 cut(s) 80
SchI GAGTC 1 cut(s) 214
ScrFI CCNGG 4 cut(s) 84, 122, 140, 158
SduI GDGCHC 1 cut(s) 158
SetI ASST 1 cut(s) 240
SsiI CCGC 6 cut(s) 73, 101, 131, 173, 189, 214
StyD4I CCNGG 4 cut(s) 82, 120, 138, 156
TauI GCSGC 1 cut(s) 104
TscAI CASTG 2 cut(s) 153, 227
TseI GCWGC 1 cut(s) 43
TspRI CASTG 2 cut(s) 153, 227
XcmI CCANNNNNNNNNTGG 1 cut(s) 74
XmnI GAANNNNTTC 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.