MD10G1233500.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0018318
Physical Location & Seq
Reverse (-)
32945395 .. 32945718
324 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1233500.v1.1.491

Sequence Viewer

Length: 324 bp
ATGTCAGAACCGCAGCTGCCGACAACGACGGCGAAATTGGGCGAGTGCGATCGGCTGCAGAGCGCGCTAACGGATTGCCACAAGCGGATCGGCCCGGGTCGGGGTCGGGAGGCGGCGTGCCGGCACCTGAACCGGGGATTGGCGGAGTGCTTGGTGTCGGTGGCGTGCCCGGACGAGTGGGAAGCGGTTCGGAGCCTGTGCGGGAGTGGCGGAACGGGGCTGAAGCGGAGTCAGTGCCAGGAGGCTCAGCTGTCGCTTTCGGTCTGCCTCTCATCGCACCAACACCGGCTCAGCTCAAACGCTGATCAATACAATAATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cmc1

Protein Analysis

108

Amino Acids

11.55

Weight (kDa)

7.58

Isoelectric Point (pI)

70.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31175 AT1G31175
malus_domestica MD05G1252500.v1.1 MD10G1233500.v1.1
prunus_persica Prupe.4G111600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0020061
rosa_roxburghii Rroxscaffold_1G00058140
rosa_samantha Rh5BG146200 Rh5DG145600
rosa_wichuraiana Rw5G012950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 123
AccII CGCG 1 cut(s) 65
AciI CCGC 8 cut(s) 11, 85, 113, 143, 185, 201, 210, 226
AclWI GGATC 1 cut(s) 95
AcuI CTGAAG 1 cut(s) 242
AfiI CCNNNNNNNGG 4 cut(s) 100, 101, 133, 139
AjnI CCWGG 1 cut(s) 237
AjuI GAANNNNNNNTTGG 2 cut(s) 122, 154
AluBI AGCT 3 cut(s) 16, 250, 294
AluI AGCT 3 cut(s) 16, 250, 294
AlwI GGATC 1 cut(s) 95
Ama87I CYCGRG 1 cut(s) 94
AoxI GGCC 1 cut(s) 91
ApeKI GCWGC 3 cut(s) 13, 16, 55
Asp700I GAANNNNTTC 1 cut(s) 186
AspLEI GCGC 2 cut(s) 65, 67
AspS9I GGNCC 1 cut(s) 92
AsuC2I CCSGG 4 cut(s) 95, 96, 134, 170
AvaI CYCGRG 1 cut(s) 94
BaeGI GKGCMC 1 cut(s) 170
BanI GGYRCC 1 cut(s) 123
BbvI GCAGC 3 cut(s) 3, 25, 42
BceAI ACGGC 1 cut(s) 45
BciT130I CCWGG 1 cut(s) 239
BclI TGATCA 1 cut(s) 304
BcnI CCSGG 4 cut(s) 95, 96, 134, 170
BfmI CTRYAG 1 cut(s) 56
BisI GCNGC 4 cut(s) 14, 17, 56, 114
BlpI GCTNAGC 2 cut(s) 246, 290
BlsI GCNGC 4 cut(s) 15, 18, 57, 115
Bme1390I CCNGG 5 cut(s) 95, 96, 134, 170, 239
BmeT110I CYCGRG 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 92
BmiI GGNNCC 2 cut(s) 125, 194
BmrFI CCNGG 5 cut(s) 95, 96, 134, 170, 239
Bpu1102I GCTNAGC 2 cut(s) 246, 290
BpuMI CCSGG 4 cut(s) 95, 96, 134, 170
BsaJI CCNNGG 2 cut(s) 94, 133
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bsc4I CCNNNNNNNGG 4 cut(s) 100, 101, 133, 139
Bse118I RCCGGY 2 cut(s) 120, 285
BseBI CCWGG 1 cut(s) 239
BseDI CCNNGG 2 cut(s) 94, 133
BseLI CCNNNNNNNGG 4 cut(s) 100, 101, 133, 139
BseMII CTCAG 2 cut(s) 260, 304
BsePI GCGCGC 1 cut(s) 63
BseSI GKGCMC 1 cut(s) 170
BseXI GCAGC 3 cut(s) 3, 25, 42
Bsh1236I CGCG 1 cut(s) 65
Bsh1285I CGRYCG 1 cut(s) 52
BshFI GGCC 1 cut(s) 93
BshNI GGYRCC 1 cut(s) 123
BsiEI CGRYCG 1 cut(s) 52
BsiHKCI CYCGRG 1 cut(s) 94
BsiSI CCGG 5 cut(s) 95, 121, 133, 170, 286
BslI CCNNNNNNNGG 4 cut(s) 100, 101, 133, 139
BsnI GGCC 1 cut(s) 93
BsoBI CYCGRG 1 cut(s) 94
Bsp1286I GDGCHC 1 cut(s) 170
Bsp143I GATC 3 cut(s) 49, 87, 304
Bsp1720I GCTNAGC 2 cut(s) 246, 290
BspACI CCGC 8 cut(s) 11, 85, 113, 143, 185, 201, 210, 226
BspANI GGCC 1 cut(s) 93
BspCNI CTCAG 2 cut(s) 259, 303
BspFNI CGCG 1 cut(s) 65
BspLI GGNNCC 2 cut(s) 125, 194
BspMAI CTGCAG 1 cut(s) 60
BspPI GGATC 1 cut(s) 95
BspT107I GGYRCC 1 cut(s) 123
BsrFI RCCGGY 2 cut(s) 120, 285
BssAI RCCGGY 2 cut(s) 120, 285
BssECI CCNNGG 2 cut(s) 94, 133
BssHII GCGCGC 1 cut(s) 63
BssMI GATC 3 cut(s) 49, 87, 304
Bst2UI CCWGG 1 cut(s) 239
BstC8I GCNNGC 4 cut(s) 65, 118, 122, 166
BstDEI CTNAG 2 cut(s) 246, 290
BstFNI CGCG 1 cut(s) 65
BstHHI GCGC 2 cut(s) 65, 67
BstKTI GATC 3 cut(s) 52, 90, 307
BstMBI GATC 3 cut(s) 49, 87, 304
BstMCI CGRYCG 1 cut(s) 52
BstMWI GCNNNNNNNGC 2 cut(s) 64, 207
BstNI CCWGG 1 cut(s) 239
BstSCI CCNGG 5 cut(s) 93, 94, 132, 168, 237
BstSFI CTRYAG 1 cut(s) 56
BstSLI GKGCMC 1 cut(s) 170
BstUI CGCG 1 cut(s) 65
BstV1I GCAGC 3 cut(s) 3, 25, 42
BsuRI GGCC 1 cut(s) 93
BtgZI GCGATG 1 cut(s) 258
BtsIMutI CAGTG 1 cut(s) 239
Cac8I GCNNGC 4 cut(s) 65, 118, 122, 166
CfoI GCGC 2 cut(s) 65, 67
Cfr10I RCCGGY 2 cut(s) 120, 285
Cfr13I GGNCC 1 cut(s) 92
Cfr9I CCCGGG 1 cut(s) 94
CviJI RGCY 9 cut(s) 16, 55, 93, 195, 220, 245, 250, 289, 294
CviKI_1 RGCY 9 cut(s) 16, 55, 93, 195, 220, 245, 250, 289, 294
DdeI CTNAG 2 cut(s) 246, 290
DpnI GATC 3 cut(s) 51, 89, 306
DpnII GATC 3 cut(s) 49, 87, 304
EciI GGCGGA 2 cut(s) 158, 225
Eco57I CTGAAG 1 cut(s) 242
Eco88I CYCGRG 1 cut(s) 94
EcoRII CCWGG 1 cut(s) 237
FauI CCCGC 1 cut(s) 194
FbaI TGATCA 1 cut(s) 304
Fnu4HI GCNGC 4 cut(s) 14, 17, 56, 114
Fsp4HI GCNGC 4 cut(s) 14, 17, 56, 114
GlaI GCGC 2 cut(s) 64, 66
GluI GCNGC 4 cut(s) 14, 17, 56, 114
HaeIII GGCC 1 cut(s) 93
HapII CCGG 5 cut(s) 95, 121, 133, 170, 286
HhaI GCGC 2 cut(s) 65, 67
Hin6I GCGC 2 cut(s) 63, 65
HinP1I GCGC 2 cut(s) 63, 65
HinfI GANTC 1 cut(s) 229
HpaII CCGG 5 cut(s) 95, 121, 133, 170, 286
Hpy188I TCNGA 2 cut(s) 7, 192
Hpy188III TCNNGA 1 cut(s) 107
Hpy99I CGWCG 1 cut(s) 31
HpyCH4V TGCA 1 cut(s) 58
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 207
HpyF3I CTNAG 2 cut(s) 246, 290
HspAI GCGC 2 cut(s) 63, 65
KroI GCCGGC 1 cut(s) 120
KroNI GCCGGC 1 cut(s) 122
Ksp22I TGATCA 1 cut(s) 304
Kzo9I GATC 3 cut(s) 49, 87, 304
LmnI GCTCC 1 cut(s) 192
LpnPI CCDG 9 cut(s) 108, 134, 140, 146, 183, 209, 224, 251, 299
Lsp1109I GCAGC 3 cut(s) 3, 25, 42
MalI GATC 3 cut(s) 51, 89, 306
MboI GATC 3 cut(s) 49, 87, 304
MhlI GDGCHC 1 cut(s) 170
MluCI AATT 1 cut(s) 35
MlyI GAGTC 1 cut(s) 238
MnlI CCTC 3 cut(s) 103, 235, 278
MroNI GCCGGC 1 cut(s) 120
MroXI GAANNNNTTC 1 cut(s) 186
MseI TTAA 1 cut(s) 322
MspA1I CMGCKG 2 cut(s) 16, 250
MspI CCGG 5 cut(s) 95, 121, 133, 170, 286
MspR9I CCNGG 5 cut(s) 95, 96, 134, 170, 239
MvaI CCWGG 1 cut(s) 239
MvnI CGCG 1 cut(s) 65
MwoI GCNNNNNNNGC 2 cut(s) 64, 207
NaeI GCCGGC 1 cut(s) 122
NciI CCSGG 4 cut(s) 95, 96, 134, 170
NdeII GATC 3 cut(s) 49, 87, 304
NgoMIV GCCGGC 1 cut(s) 120
NlaIV GGNNCC 2 cut(s) 125, 194
PauI GCGCGC 1 cut(s) 63
PdiI GCCGGC 1 cut(s) 122
PdmI GAANNNNTTC 1 cut(s) 186
PkrI GCNGC 4 cut(s) 15, 18, 57, 115
Ple19I CGATCG 1 cut(s) 52
PleI GAGTC 1 cut(s) 237
PpsI GAGTC 1 cut(s) 237
Psp6I CCWGG 1 cut(s) 237
PspGI CCWGG 1 cut(s) 237
PspN4I GGNNCC 2 cut(s) 125, 194
PspPI GGNCC 1 cut(s) 92
PstI CTGCAG 1 cut(s) 60
PteI GCGCGC 1 cut(s) 63
PvuI CGATCG 1 cut(s) 52
PvuII CAGCTG 2 cut(s) 16, 250
SaqAI TTAA 1 cut(s) 322
SatI GCNGC 4 cut(s) 14, 17, 56, 114
Sau3AI GATC 3 cut(s) 49, 87, 304
Sau96I GGNCC 1 cut(s) 92
SchI GAGTC 1 cut(s) 238
ScrFI CCNGG 5 cut(s) 95, 96, 134, 170, 239
SduI GDGCHC 1 cut(s) 170
SetI ASST 4 cut(s) 18, 129, 252, 296
SfcI CTRYAG 1 cut(s) 56
SmaI CCCGGG 1 cut(s) 96
Sse9I AATT 1 cut(s) 35
SsiI CCGC 8 cut(s) 11, 85, 113, 143, 185, 201, 210, 226
StyD4I CCNGG 5 cut(s) 93, 94, 132, 168, 237
TaqII GACCGA 1 cut(s) 250
TasI AATT 1 cut(s) 35
TauI GCSGC 1 cut(s) 116
Tru1I TTAA 1 cut(s) 322
Tru9I TTAA 1 cut(s) 322
TscAI CASTG 1 cut(s) 239
TseI GCWGC 3 cut(s) 13, 16, 55
TspGWI ACGGA 1 cut(s) 86
TspMI CCCGGG 1 cut(s) 94
TspRI CASTG 1 cut(s) 239
XmaI CCCGGG 1 cut(s) 94
XmnI GAANNNNTTC 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.