Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015377

Physical Location & Seq

Genomic Coordinates Reverse (-)

11214676 .. 11216141

Gene Structure 1466 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G31330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGTCGCTCACTATCCCGGCGAATCTCGTTCTCAACCCGAGATCTAACAAATCTCTCACTCAATCCGTACCTAAATCCTCCGCAAGATTCGTCTGCTCCGATGACAAATCCTCCTCCTCCACACCTCAATCCATGAAAGCTTTCTCCGCCGCCGTCGCCCTCTCTTCCATCCTCCTCTCTGCTCCTATGCCAGCTGTCGCTGATATCTCAGGTTTGACTCCTTGCAAGGACTCAAAACAGTTCGCTAAAAGAGAGAAGCAACAGATCAAGAAGCTTGAATCTTCTCTTAAGCTCTACGCTCCTGAATCTGCCCCTGCTCTTGCTCTCAATGCTCAGATCGAGAAAACCAAACGCAGGTTCGACAACTACGGGAAGTACGGATTGTTATGCGGGTCAGACGGTTTACCGCACTTGATAGTGAACGGAGACCAGCGGCATTGGGGAGAGTTCATTACTCCAGGGATTCTTTTCCTCTACATTGCTGGATGGATCGGGTGGGTTGGAAGAAGCTACTTAATAGCTATTAGTGGTGAGAAGAAACCCGCGATGAAAGAGATCATCATCGATGTTCCTTTGGCTAGTCGGATCATCTTCCGTGGTTTCATTTGGCCCGTTGCTGCCTACAGAGAGTTTCTCAATGGTGATCTCATTGCTAAGGATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0010287 GO:0016020 GO:0019904 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PSI_PsaF

Protein Analysis

221

Amino Acids

24.17

Weight (kDa)

9.58

Isoelectric Point (pI)

48.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSI_PsaF	PF02507	55 - 220	3.9e-80	Photosystem I reaction centre subunit III

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31330
fragaria_vesca	FvH4_3g11800
malus_domestica	MD05G1259200.v1.1 MD10G1238800.v1.1
prunus_persica	Prupe.4G105600_v2.0.a1
pyrus_communis	pycom10g19980
rosa_chinensis	RchiOBHm_Chr5g0019221
rosa_laevigata	RLG00000032429
rosa_multiflora	Rmu_sc0002561.1_g000004
rosa_roxburghii	Rroxscaffold_1G00058770
rosa_rugosa	Rorug05G0048400
rosa_samantha	Rh5AG139800 Rh5BG138800 Rh5CG150200 Rh5DG139400
rosa_wichuraiana	Rw5G012430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	345
AccII	CGCG	1 cut(s)	545
AciI	CCGC	7 cut(s)	81, 147, 150, 390, 407, 433, 543
AclWI	GGATC	2 cut(s)	497, 593
AfaI	GTAC	2 cut(s)	69, 377
AfiI	CCNNNNNNNGG	1 cut(s)	354
AflII	CTTAAG	1 cut(s)	287
AgsI	TTSAA	1 cut(s)	278
AjnI	CCWGG	1 cut(s)	457
AjuI	GAANNNNNNNTTGG	2 cut(s)	341, 373
AluBI	AGCT	6 cut(s)	140, 194, 274, 292, 510, 521
AluI	AGCT	6 cut(s)	140, 194, 274, 292, 510, 521
Alw26I	GTCTC	1 cut(s)	420
AlwI	GGATC	2 cut(s)	497, 593
Ama87I	CYCGRG	1 cut(s)	37
AoxI	GGCC	1 cut(s)	608
ApeKI	GCWGC	1 cut(s)	617
Asp700I	GAANNNNTTC	1 cut(s)	140
AspS9I	GGNCC	1 cut(s)	609
AsuC2I	CCSGG	1 cut(s)	17
AsuHPI	GGTGA	2 cut(s)	542, 653
AvaI	CYCGRG	1 cut(s)	37
BbvI	GCAGC	1 cut(s)	604
BccI	CCATC	2 cut(s)	176, 480
BceAI	ACGGC	1 cut(s)	137
BciT130I	CCWGG	1 cut(s)	459
BcnI	CCSGG	1 cut(s)	17
BcoDI	GTCTC	1 cut(s)	420
BfaI	CTAG	1 cut(s)	579
BfmI	CTRYAG	1 cut(s)	622
BfrI	CTTAAG	1 cut(s)	287
BfuAI	ACCTGC	1 cut(s)	345
BglII	AGATCT	1 cut(s)	41
BisI	GCNGC	3 cut(s)	150, 434, 618
BlsI	GCNGC	3 cut(s)	151, 435, 619
Bme1390I	CCNGG	2 cut(s)	17, 459
BmeT110I	CYCGRG	1 cut(s)	37
BmgT120I	GGNCC	1 cut(s)	609
BmrFI	CCNGG	2 cut(s)	17, 459
BplI	GAGNNNNNCTC	2 cut(s)	618, 650
BpmI	CTGGAG	1 cut(s)	441
Bpu10I	CCTNAGC	1 cut(s)	654
BpuMI	CCSGG	1 cut(s)	17
Bsa29I	ATCGAT	1 cut(s)	564
BsaBI	GATNNNNATC	1 cut(s)	560
BsaI	GGTCTC	1 cut(s)	420
BsaJI	CCNNGG	2 cut(s)	458, 595
BsaXI	ACNNNNNCTCC	2 cut(s)	95, 125
Bsc4I	CCNNNNNNNGG	1 cut(s)	354
Bse3DI	GCAATG	2 cut(s)	477, 648
Bse8I	GATNNNNATC	1 cut(s)	560
BseBI	CCWGG	1 cut(s)	459
BseCI	ATCGAT	1 cut(s)	564
BseDI	CCNNGG	2 cut(s)	458, 595
BseGI	GGATG	3 cut(s)	168, 491, 664
BseJI	GATNNNNATC	1 cut(s)	560
BseLI	CCNNNNNNNGG	1 cut(s)	354
BseMI	GCAATG	2 cut(s)	477, 648
BseMII	CTCAG	2 cut(s)	222, 347
BseRI	GAGGAG	3 cut(s)	103, 106, 164
BseXI	GCAGC	1 cut(s)	604
Bsh1236I	CGCG	1 cut(s)	545
BshFI	GGCC	1 cut(s)	610
BshVI	ATCGAT	1 cut(s)	564
BsiHKCI	CYCGRG	1 cut(s)	37
BsiSI	CCGG	1 cut(s)	17
BslI	CCNNNNNNNGG	1 cut(s)	354
BsmAI	GTCTC	1 cut(s)	420
BsnI	GGCC	1 cut(s)	610
Bso31I	GGTCTC	1 cut(s)	420
BsoBI	CYCGRG	1 cut(s)	37
Bsp143I	GATC	7 cut(s)	41, 264, 336, 489, 555, 585, 643
BspACI	CCGC	7 cut(s)	81, 147, 150, 390, 407, 433, 543
BspANI	GGCC	1 cut(s)	610
BspCNI	CTCAG	2 cut(s)	221, 346
BspDI	ATCGAT	1 cut(s)	564
BspFNI	CGCG	1 cut(s)	545
BspMI	ACCTGC	1 cut(s)	345
BspPI	GGATC	2 cut(s)	497, 593
BspTI	CTTAAG	1 cut(s)	287
BspTNI	GGTCTC	1 cut(s)	420
BsrDI	GCAATG	2 cut(s)	477, 648
BssECI	CCNNGG	2 cut(s)	458, 595
BssMI	GATC	7 cut(s)	41, 264, 336, 489, 555, 585, 643
Bst2UI	CCWGG	1 cut(s)	459
Bst4CI	ACNGT	2 cut(s)	240, 401
Bst6I	CTCTTC	1 cut(s)	169
BstAFI	CTTAAG	1 cut(s)	287
BstC8I	GCNNGC	1 cut(s)	192
BstDEI	CTNAG	3 cut(s)	208, 333, 654
BstDSI	CCRYGG	1 cut(s)	595
BstF5I	GGATG	3 cut(s)	168, 491, 664
BstFNI	CGCG	1 cut(s)	545
BstKTI	GATC	7 cut(s)	44, 267, 339, 492, 558, 588, 646
BstMAI	GTCTC	1 cut(s)	420
BstMBI	GATC	7 cut(s)	41, 264, 336, 489, 555, 585, 643
BstMWI	GCNNNNNNNGC	3 cut(s)	146, 155, 329
BstNI	CCWGG	1 cut(s)	459
BstSCI	CCNGG	2 cut(s)	15, 457
BstSFI	CTRYAG	1 cut(s)	622
BstUI	CGCG	1 cut(s)	545
BstV1I	GCAGC	1 cut(s)	604
BstX2I	RGATCY	1 cut(s)	41
BstYI	RGATCY	1 cut(s)	41
Bsu15I	ATCGAT	1 cut(s)	564
BsuRI	GGCC	1 cut(s)	610
BsuTUI	ATCGAT	1 cut(s)	564
BtgI	CCRYGG	1 cut(s)	595
BtgZI	GCGATG	1 cut(s)	560
BtsCI	GGATG	3 cut(s)	168, 491, 664
BveI	ACCTGC	1 cut(s)	345
Cac8I	GCNNGC	1 cut(s)	192
Cfr13I	GGNCC	1 cut(s)	609
ClaI	ATCGAT	1 cut(s)	564
Csp6I	GTAC	2 cut(s)	68, 376
CviAII	CATG	1 cut(s)	133
CviJI	RGCY	8 cut(s)	140, 194, 274, 292, 510, 521, 578, 610
CviKI_1	RGCY	8 cut(s)	140, 194, 274, 292, 510, 521, 578, 610
CviQI	GTAC	2 cut(s)	68, 376
DdeI	CTNAG	3 cut(s)	208, 333, 654
DpnI	GATC	7 cut(s)	43, 266, 338, 491, 557, 587, 645
DpnII	GATC	7 cut(s)	41, 264, 336, 489, 555, 585, 643
Eam1104I	CTCTTC	1 cut(s)	169
EarI	CTCTTC	1 cut(s)	169
EciI	GGCGGA	1 cut(s)	136
Eco31I	GGTCTC	1 cut(s)	420
Eco32I	GATATC	1 cut(s)	205
Eco88I	CYCGRG	1 cut(s)	37
EcoRII	CCWGG	1 cut(s)	457
EcoRV	GATATC	1 cut(s)	205
FaeI	CATG	1 cut(s)	136
FaiI	YATR	3 cut(s)	134, 188, 388
FatI	CATG	1 cut(s)	132
FauI	CCCGC	2 cut(s)	383, 550
Fnu4HI	GCNGC	3 cut(s)	150, 434, 618
FokI	GGATG	2 cut(s)	155, 498
Fsp4HI	GCNGC	3 cut(s)	150, 434, 618
FspBI	CTAG	1 cut(s)	579
GluI	GCNGC	3 cut(s)	150, 434, 618
GsuI	CTGGAG	1 cut(s)	441
HaeIII	GGCC	1 cut(s)	610
HapII	CCGG	1 cut(s)	17
Hin1II	CATG	1 cut(s)	136
HindIII	AAGCTT	2 cut(s)	138, 272
HinfI	GANTC	7 cut(s)	22, 87, 217, 230, 278, 305, 463
HpaII	CCGG	1 cut(s)	17
HphI	GGTGA	2 cut(s)	542, 653
Hpy166II	GTNNAC	2 cut(s)	404, 421
Hpy188I	TCNGA	4 cut(s)	100, 336, 397, 585
Hpy188III	TCNNGA	3 cut(s)	268, 302, 340
Hpy8I	GTNNAC	2 cut(s)	404, 421
Hpy99I	CGWCG	1 cut(s)	158
HpyCH4III	ACNGT	2 cut(s)	240, 401
HpyCH4V	TGCA	1 cut(s)	225
HpyF10VI	GCNNNNNNNGC	3 cut(s)	146, 155, 329
HpyF3I	CTNAG	3 cut(s)	208, 333, 654
Hsp92II	CATG	1 cut(s)	136
Kzo9I	GATC	7 cut(s)	41, 264, 336, 489, 555, 585, 643
LmnI	GCTCC	3 cut(s)	101, 187, 304
Lsp1109I	GCAGC	1 cut(s)	604
MaeI	CTAG	1 cut(s)	579
MalI	GATC	7 cut(s)	43, 266, 338, 491, 557, 587, 645
MboI	GATC	7 cut(s)	41, 264, 336, 489, 555, 585, 643
MboII	GAAGA	5 cut(s)	156, 273, 516, 547, 583
MflI	RGATCY	1 cut(s)	41
MlyI	GAGTC	2 cut(s)	211, 224
MmeI	TCCRAC	2 cut(s)	481, 563
MnlI	CCTC	9 cut(s)	88, 121, 124, 127, 135, 170, 182, 185, 482
MroXI	GAANNNNTTC	1 cut(s)	140
MseI	TTAA	3 cut(s)	288, 515, 664
MspA1I	CMGCKG	2 cut(s)	194, 433
MspCI	CTTAAG	1 cut(s)	287
MspI	CCGG	1 cut(s)	17
MspR9I	CCNGG	2 cut(s)	17, 459
MvaI	CCWGG	1 cut(s)	459
MvnI	CGCG	1 cut(s)	545
MwoI	GCNNNNNNNGC	3 cut(s)	146, 155, 329
NciI	CCSGG	1 cut(s)	17
NdeII	GATC	7 cut(s)	41, 264, 336, 489, 555, 585, 643
NlaIII	CATG	1 cut(s)	136
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PdmI	GAANNNNTTC	1 cut(s)	140
PfeI	GAWTC	5 cut(s)	22, 87, 278, 305, 463
PkrI	GCNGC	3 cut(s)	151, 435, 619
PleI	GAGTC	2 cut(s)	211, 224
PpsI	GAGTC	2 cut(s)	211, 224
Psp6I	CCWGG	1 cut(s)	457
PspGI	CCWGG	1 cut(s)	457
PspPI	GGNCC	1 cut(s)	609
PsuI	RGATCY	1 cut(s)	41
PvuII	CAGCTG	1 cut(s)	194
RsaI	GTAC	2 cut(s)	69, 377
RsaNI	GTAC	2 cut(s)	68, 376
SaqAI	TTAA	3 cut(s)	288, 515, 664
SatI	GCNGC	3 cut(s)	150, 434, 618
Sau3AI	GATC	7 cut(s)	41, 264, 336, 489, 555, 585, 643
Sau96I	GGNCC	1 cut(s)	609
SchI	GAGTC	2 cut(s)	211, 224
ScrFI	CCNGG	2 cut(s)	17, 459
SfcI	CTRYAG	1 cut(s)	622
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
SsiI	CCGC	7 cut(s)	81, 147, 150, 390, 407, 433, 543
SspMI	CTAG	1 cut(s)	579
StyD4I	CCNGG	2 cut(s)	15, 457
TaaI	ACNGT	2 cut(s)	240, 401
TaqI	TCGA	3 cut(s)	339, 360, 564
TauI	GCSGC	2 cut(s)	152, 436
TfiI	GAWTC	5 cut(s)	22, 87, 278, 305, 463
Tru1I	TTAA	3 cut(s)	288, 515, 664
Tru9I	TTAA	3 cut(s)	288, 515, 664
TseI	GCWGC	1 cut(s)	617
TspDTI	ATGAA	4 cut(s)	149, 439, 563, 592
TspGWI	ACGGA	4 cut(s)	55, 393, 438, 584
Vha464I	CTTAAG	1 cut(s)	287
XmnI	GAANNNNTTC	1 cut(s)	140
XspI	CTAG	1 cut(s)	579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.