Prupe.4G105600_v2.0.a1

Photosystem I reaction center subunit III

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
5459431 .. 5460349
919 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G105600.1

Sequence Viewer

Length: 690 bp
ATGTCTCTCACAATTCCCACAAACCTCTCAAAACCCATGTTGAAGCCAAAATTCAGCTCCCCATTGGCCACAAAACTGCCAAGGACCGTGGTCTTCTGCTCAGCCTCTCAAACTCCAAACCCTACCCCAGAGAAAATATCCACTGCATCACCAATGCAGGCTTTCTCTGCTGCACTTGCCCTGTCCTCCATCCTCCTGGGCTCAGCTCCCATGCCTGCAGTTGCAGACATCGCAGGCCTCACCCCATGCAAAGACTCCAAGCAGTTTGCCAAACGTGAGAAGCAGCAGATCAAGAAGCTTGAGTCTTCACTGAAGCTCTATGCACCTGACAGTGCACCAGCCCTGGCCATCAACGCCACCATAGAGAAGACTCAGAGGAGGTTTGCCAACTATGGCAAGCAGGGTTTGCTCTGTGGCTCTGATGGGCTTCCCCATTTGATTGTCAGCGGTGACCAGAGGCACTGGGGTGAGTTTATCACCCCCGGCATTCTGTTCCTGTACATTGCTGGGTGGATTGGGTGGGTTGGCAGGAGCTACTTGATTGCCATCAGGGATGACAAGAAGCCAACGCAGAAGGAGATCATCATTGATGTGCCTTTGGCCACTAGCTTGGTTTTCAGAGGCTTCATCTGGCCTGTGGCTGCTTACAGAGAGCTCGTGAACGGTGAACTTATTGCCAAGGACGTTTAA

Protein Analysis

230

Amino Acids

24.89

Weight (kDa)

9.6

Isoelectric Point (pI)

35.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015377)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31330
fragaria_vesca FvH4_3g11800
malus_domestica MD05G1259200.v1.1 MD10G1238800.v1.1
prunus_persica Prupe.4G105600_v2.0.a1
pyrus_communis pycom10g19980
rosa_chinensis RchiOBHm_Chr5g0019221
rosa_laevigata RLG00000032429
rosa_multiflora Rmu_sc0002561.1_g000004
rosa_roxburghii Rroxscaffold_1G00058770
rosa_rugosa Rorug05G0048400
rosa_samantha Rh5AG139800 Rh5BG138800 Rh5CG150200 Rh5DG139400
rosa_wichuraiana Rw5G012430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 447
AcoI YGGCCR 3 cut(s) 66, 345, 600
AcsI RAATTY 1 cut(s) 50
AcuI CTGAAG 1 cut(s) 332
AfaI GTAC 1 cut(s) 500
AgsI TTSAA 1 cut(s) 43
AjnI CCWGG 2 cut(s) 195, 342
AleI CACNNNNGTG 1 cut(s) 465
AluBI AGCT 7 cut(s) 57, 206, 298, 316, 534, 609, 655
AluI AGCT 7 cut(s) 57, 206, 298, 316, 534, 609, 655
Alw21I GWGCWC 2 cut(s) 337, 657
Alw26I GTCTC 1 cut(s) 9
Alw44I GTGCAC 1 cut(s) 333
AoxI GGCC 5 cut(s) 66, 235, 345, 600, 632
ApaLI GTGCAC 1 cut(s) 333
ApeKI GCWGC 3 cut(s) 170, 283, 641
ApoI RAATTY 1 cut(s) 50
AspS9I GGNCC 1 cut(s) 84
AsuC2I CCSGG 1 cut(s) 483
AsuHPI GGTGA 6 cut(s) 141, 232, 461, 469, 479, 677
AvaII GGWCC 1 cut(s) 84
BaeGI GKGCMC 1 cut(s) 337
BalI TGGCCA 3 cut(s) 68, 347, 602
BanII GRGCYC 2 cut(s) 203, 657
BauI CACGAG 1 cut(s) 656
BbsI GAAGAC 3 cut(s) 85, 297, 374
Bbv12I GWGCWC 2 cut(s) 337, 657
BbvI GCAGC 3 cut(s) 157, 295, 628
BccI CCATC 4 cut(s) 197, 356, 416, 554
BciT130I CCWGG 2 cut(s) 197, 344
BcnI CCSGG 1 cut(s) 483
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 1 cut(s) 606
BfmI CTRYAG 1 cut(s) 216
BisI GCNGC 3 cut(s) 171, 284, 642
BlpI GCTNAGC 2 cut(s) 100, 202
BlsI GCNGC 3 cut(s) 172, 285, 643
Bme1390I CCNGG 3 cut(s) 197, 344, 483
Bme18I GGWCC 1 cut(s) 84
BmgT120I GGNCC 1 cut(s) 84
BmrFI CCNGG 3 cut(s) 197, 344, 483
BmrI ACTGGG 1 cut(s) 472
BmsI GCATC 1 cut(s) 155
BmuI ACTGGG 1 cut(s) 472
BoxI GACNNNNGTC 1 cut(s) 89
BpiI GAAGAC 3 cut(s) 85, 297, 374
Bpu1102I GCTNAGC 2 cut(s) 100, 202
BpuEI CTTGAG 1 cut(s) 320
BpuMI CCSGG 1 cut(s) 483
BsaBI GATNNNNATC 1 cut(s) 545
BsaJI CCNNGG 6 cut(s) 80, 87, 196, 342, 481, 678
Bse1I ACTGG 1 cut(s) 467
Bse3DI GCAATG 1 cut(s) 501
Bse8I GATNNNNATC 1 cut(s) 545
BseBI CCWGG 2 cut(s) 197, 344
BseDI CCNNGG 6 cut(s) 80, 87, 196, 342, 481, 678
BseGI GGATG 2 cut(s) 189, 559
BseJI GATNNNNATC 1 cut(s) 545
BseMI GCAATG 1 cut(s) 501
BseMII CTCAG 3 cut(s) 114, 216, 386
BseNI ACTGG 1 cut(s) 467
BseRI GAGGAG 1 cut(s) 391
BseSI GKGCMC 1 cut(s) 337
BseXI GCAGC 3 cut(s) 157, 295, 628
BseYI CCCAGC 1 cut(s) 506
BsgI GTGCAG 1 cut(s) 156
BshFI GGCC 5 cut(s) 68, 237, 347, 602, 634
BsiHKAI GWGCWC 2 cut(s) 337, 657
BsiSI CCGG 1 cut(s) 483
BsmAI GTCTC 1 cut(s) 9
BsmI GAATGC 1 cut(s) 486
BsnI GGCC 5 cut(s) 68, 237, 347, 602, 634
Bsp1286I GDGCHC 3 cut(s) 203, 337, 657
Bsp1407I TGTACA 1 cut(s) 498
Bsp143I GATC 2 cut(s) 288, 579
Bsp1720I GCTNAGC 2 cut(s) 100, 202
BspACI CCGC 1 cut(s) 447
BspANI GGCC 5 cut(s) 68, 237, 347, 602, 634
BspCNI CTCAG 3 cut(s) 113, 215, 385
BspMAI CTGCAG 1 cut(s) 220
BsrDI GCAATG 1 cut(s) 501
BsrGI TGTACA 1 cut(s) 498
BsrI ACTGG 1 cut(s) 467
BssECI CCNNGG 6 cut(s) 80, 87, 196, 342, 481, 678
BssMI GATC 2 cut(s) 288, 579
BssSI CACGAG 1 cut(s) 656
BssT1I CCWWGG 2 cut(s) 80, 678
Bst2BI CACGAG 1 cut(s) 656
Bst2UI CCWGG 2 cut(s) 197, 344
Bst4CI ACNGT 3 cut(s) 88, 332, 665
BstAPI GCANNNNNTGC 1 cut(s) 406
BstAUI TGTACA 1 cut(s) 498
BstC8I GCNNGC 4 cut(s) 159, 216, 235, 398
BstDEI CTNAG 3 cut(s) 100, 202, 372
BstDSI CCRYGG 1 cut(s) 87
BstEII GGTNACC 1 cut(s) 449
BstF5I GGATG 2 cut(s) 189, 559
BstKTI GATC 2 cut(s) 291, 582
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 2 cut(s) 288, 579
BstMWI GCNNNNNNNGC 5 cut(s) 167, 176, 230, 353, 406
BstNI CCWGG 2 cut(s) 197, 344
BstPAI GACNNNNGTC 1 cut(s) 89
BstPI GGTNACC 1 cut(s) 449
BstSCI CCNGG 3 cut(s) 195, 342, 481
BstSFI CTRYAG 1 cut(s) 216
BstSLI GKGCMC 1 cut(s) 337
BstV1I GCAGC 3 cut(s) 157, 295, 628
BstV2I GAAGAC 3 cut(s) 85, 297, 374
BstXI CCANNNNNNTGG 2 cut(s) 196, 610
BsuRI GGCC 5 cut(s) 68, 237, 347, 602, 634
BtgI CCRYGG 1 cut(s) 87
BtgZI GCGATG 1 cut(s) 214
BtsCI GGATG 2 cut(s) 189, 559
BtsI GCAGTG 1 cut(s) 141
BtsIMutI CAGTG 4 cut(s) 141, 308, 337, 460
Cac8I GCNNGC 4 cut(s) 159, 216, 235, 398
Cfr13I GGNCC 1 cut(s) 84
Csp6I GTAC 1 cut(s) 499
CspCI CAANNNNNGTGG 2 cut(s) 69, 104
CviAII CATG 3 cut(s) 37, 211, 246
CviQI GTAC 1 cut(s) 499
DdeI CTNAG 3 cut(s) 100, 202, 372
DpnI GATC 2 cut(s) 290, 581
DpnII GATC 2 cut(s) 288, 579
EaeI YGGCCR 3 cut(s) 66, 345, 600
Ecl136II GAGCTC 1 cut(s) 655
Eco130I CCWWGG 2 cut(s) 80, 678
Eco147I AGGCCT 1 cut(s) 237
Eco24I GRGCYC 2 cut(s) 203, 657
Eco47I GGWCC 1 cut(s) 84
Eco53kI GAGCTC 1 cut(s) 655
Eco57I CTGAAG 1 cut(s) 332
Eco91I GGTNACC 1 cut(s) 449
EcoICRI GAGCTC 1 cut(s) 655
EcoO65I GGTNACC 1 cut(s) 449
EcoRII CCWGG 2 cut(s) 195, 342
EcoT14I CCWWGG 2 cut(s) 80, 678
EcoT38I GRGCYC 2 cut(s) 203, 657
ErhI CCWWGG 2 cut(s) 80, 678
FaeI CATG 3 cut(s) 40, 214, 249
FaiI YATR 6 cut(s) 38, 212, 247, 321, 362, 393
FatI CATG 3 cut(s) 36, 210, 245
Fnu4HI GCNGC 3 cut(s) 171, 284, 642
FokI GGATG 2 cut(s) 176, 566
FriOI GRGCYC 2 cut(s) 203, 657
Fsp4HI GCNGC 3 cut(s) 171, 284, 642
FspBI CTAG 1 cut(s) 606
GluI GCNGC 3 cut(s) 171, 284, 642
GsaI CCCAGC 1 cut(s) 510
HaeIII GGCC 5 cut(s) 68, 237, 347, 602, 634
HapII CCGG 1 cut(s) 483
Hin1II CATG 3 cut(s) 40, 214, 249
HindIII AAGCTT 1 cut(s) 296
HinfI GANTC 3 cut(s) 254, 302, 370
HpaII CCGG 1 cut(s) 483
HphI GGTGA 6 cut(s) 141, 232, 461, 469, 479, 677
Hpy166II GTNNAC 3 cut(s) 335, 661, 668
Hpy188I TCNGA 3 cut(s) 375, 421, 620
Hpy188III TCNNGA 2 cut(s) 292, 658
Hpy8I GTNNAC 3 cut(s) 335, 661, 668
HpyAV CCTTC 1 cut(s) 568
HpyCH4III ACNGT 3 cut(s) 88, 332, 665
HpyCH4IV ACGT 2 cut(s) 274, 684
HpyCH4V TGCA 8 cut(s) 146, 157, 173, 218, 224, 249, 323, 335
HpyF10VI GCNNNNNNNGC 5 cut(s) 167, 176, 230, 353, 406
HpyF3I CTNAG 3 cut(s) 100, 202, 372
HpySE526I ACGT 2 cut(s) 274, 684
Hsp92II CATG 3 cut(s) 40, 214, 249
Kzo9I GATC 2 cut(s) 288, 579
LmnI GCTCC 3 cut(s) 62, 211, 531
Lsp1109I GCAGC 3 cut(s) 157, 295, 628
LweI GCATC 1 cut(s) 155
MaeI CTAG 1 cut(s) 606
MaeII ACGT 2 cut(s) 274, 684
MaeIII GTNAC 1 cut(s) 449
MalI GATC 2 cut(s) 290, 581
MboI GATC 2 cut(s) 288, 579
MboII GAAGA 3 cut(s) 85, 297, 379
MhlI GDGCHC 3 cut(s) 203, 337, 657
MlsI TGGCCA 3 cut(s) 68, 347, 602
MluCI AATT 2 cut(s) 12, 50
MluNI TGGCCA 3 cut(s) 68, 347, 602
MlyI GAGTC 3 cut(s) 248, 311, 364
MnlI CCTC 9 cut(s) 35, 115, 196, 203, 248, 369, 372, 450, 614
Mox20I TGGCCA 3 cut(s) 68, 347, 602
MscI TGGCCA 3 cut(s) 68, 347, 602
MseI TTAA 1 cut(s) 688
MslI CAYNNNNRTG 2 cut(s) 465, 590
Msp20I TGGCCA 3 cut(s) 68, 347, 602
MspA1I CMGCKG 1 cut(s) 447
MspI CCGG 1 cut(s) 483
MspR9I CCNGG 3 cut(s) 197, 344, 483
Mva1269I GAATGC 1 cut(s) 486
MvaI CCWGG 2 cut(s) 197, 344
MwoI GCNNNNNNNGC 5 cut(s) 167, 176, 230, 353, 406
NciI CCSGG 1 cut(s) 483
NdeII GATC 2 cut(s) 288, 579
NlaIII CATG 3 cut(s) 40, 214, 249
NmuCI GTSAC 1 cut(s) 449
OliI CACNNNNGTG 1 cut(s) 465
PceI AGGCCT 1 cut(s) 237
PctI GAATGC 1 cut(s) 486
PkrI GCNGC 3 cut(s) 172, 285, 643
PleI GAGTC 3 cut(s) 248, 310, 364
PpsI GAGTC 3 cut(s) 248, 310, 364
PshAI GACNNNNGTC 1 cut(s) 89
Psp124BI GAGCTC 1 cut(s) 657
Psp6I CCWGG 2 cut(s) 195, 342
PspEI GGTNACC 1 cut(s) 449
PspFI CCCAGC 1 cut(s) 506
PspGI CCWGG 2 cut(s) 195, 342
PspPI GGNCC 1 cut(s) 84
PstI CTGCAG 1 cut(s) 220
RsaI GTAC 1 cut(s) 500
RsaNI GTAC 1 cut(s) 499
RseI CAYNNNNRTG 2 cut(s) 465, 590
SacI GAGCTC 1 cut(s) 657
SaqAI TTAA 1 cut(s) 688
SatI GCNGC 3 cut(s) 171, 284, 642
Sau3AI GATC 2 cut(s) 288, 579
Sau96I GGNCC 1 cut(s) 84
SchI GAGTC 3 cut(s) 248, 311, 364
ScrFI CCNGG 3 cut(s) 197, 344, 483
SduI GDGCHC 3 cut(s) 203, 337, 657
SfaNI GCATC 1 cut(s) 155
SfcI CTRYAG 1 cut(s) 216
SinI GGWCC 1 cut(s) 84
SmiMI CAYNNNNRTG 2 cut(s) 465, 590
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
Sse9I AATT 2 cut(s) 12, 50
SseBI AGGCCT 1 cut(s) 237
SsiI CCGC 1 cut(s) 447
SspMI CTAG 1 cut(s) 606
SstI GAGCTC 1 cut(s) 657
StuI AGGCCT 1 cut(s) 237
StyD4I CCNGG 3 cut(s) 195, 342, 481
StyI CCWWGG 2 cut(s) 80, 678
TaaI ACNGT 3 cut(s) 88, 332, 665
TaiI ACGT 2 cut(s) 277, 687
TasI AATT 2 cut(s) 12, 50
TatI WGTACW 1 cut(s) 498
Tru1I TTAA 1 cut(s) 688
Tru9I TTAA 1 cut(s) 688
TscAI CASTG 4 cut(s) 148, 315, 337, 467
TseFI GTSAC 1 cut(s) 449
TseI GCWGC 3 cut(s) 170, 283, 641
Tsp45I GTSAC 1 cut(s) 449
TspDTI ATGAA 1 cut(s) 616
TspRI CASTG 4 cut(s) 148, 315, 337, 467
VneI GTGCAC 1 cut(s) 333
VpaK11BI GGWCC 1 cut(s) 84
XapI RAATTY 1 cut(s) 50
XspI CTAG 1 cut(s) 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.