Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0015377

Physical Location & Seq

Genomic Coordinates Reverse (-)

80747436 .. 80748603

Gene Structure 1168 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00058770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGTCTCTCACTATTCCCACAAACCTCTCAAAATCCATGTTGAAACCTAAGCTCAGCTCTCCCTTGGCCCTAAAGCCAAGGACCATGCTCACTGTGTGCTCAGCCACCCCAAACCCAGAGAAAATATCCACTGCTTCAGCAATGAAGACTTTCTCTGCTGCACTAGCACTCTCCTCCATCATCTTGGGCGCAGCTCCCATCCCAGCCATGGCTGACATCTCAGGCCTAACCCCATGCAAAGACTCCAAGCAGTTCGCCAAGCGCGAGAAGCAGTCGATCAAGAAGCTCGAGTCCTCATTGAAGCTGTACGCACCGGACAGCGCACCTGCCTTGGCCATCAATGCAACAATAGAGAAGACCAAGAGAAGGTTTGACAACTACGGCAAGCAGGGTTTGCTCTGTGGGTCTGATGGGCTTCCCCATTTGATTGTGAGCGGTGACCAGAGGCACTGGGGTGAGTTCATCACTCCCGGGATTCTGTTCCTTTACATTGCTGGGTGGATTGGGTGGGTTGGAAGGAGCTACTTGATTGCCATTAGGGATGATAAGAAGCCAACACAGAAGGAGATCATCATTGATGTGCCTTTGGCTACTGGCTTGGTTTTCAGAGGCTTCAGTTGGCCCGTTGCTGCTTACAGAGAGTTGGTGAATGGTGAACTCATTGCCAAGGACGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0010287 GO:0016020 GO:0019904 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PSI_PsaF

Protein Analysis

225

Amino Acids

24.4

Weight (kDa)

9.63

Isoelectric Point (pI)

34.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSI_PsaF	PF02507	62 - 224	7.8e-81	Photosystem I reaction centre subunit III

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31330
fragaria_vesca	FvH4_3g11800
malus_domestica	MD05G1259200.v1.1 MD10G1238800.v1.1
prunus_persica	Prupe.4G105600_v2.0.a1
pyrus_communis	pycom10g19980
rosa_chinensis	RchiOBHm_Chr5g0019221
rosa_laevigata	RLG00000032429
rosa_multiflora	Rmu_sc0002561.1_g000004
rosa_roxburghii	Rroxscaffold_1G00058770
rosa_rugosa	Rorug05G0048400
rosa_samantha	Rh5AG139800 Rh5BG138800 Rh5CG150200 Rh5DG139400
rosa_wichuraiana	Rw5G012430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	334
Acc36I	ACCTGC	1 cut(s)	334
AccBSI	CCGCTC	1 cut(s)	435
AccII	CGCG	1 cut(s)	264
AciI	CCGC	1 cut(s)	435
AcoI	YGGCCR	1 cut(s)	333
AcuI	CTGAAG	2 cut(s)	120, 598
AdeI	CACNNNGTG	1 cut(s)	96
AfaI	GTAC	1 cut(s)	308
AfiI	CCNNNNNNNGG	2 cut(s)	208, 366
AflIII	ACRYGT	1 cut(s)	672
AgsI	TTSAA	2 cut(s)	43, 301
AjiI	CACGTC	1 cut(s)	673
AleI	CACNNNNGTG	1 cut(s)	453
AluBI	AGCT	6 cut(s)	52, 57, 194, 286, 304, 522
AluI	AGCT	6 cut(s)	52, 57, 194, 286, 304, 522
Alw21I	GWGCWC	1 cut(s)	101
Alw26I	GTCTC	1 cut(s)	9
Ama87I	CYCGRG	2 cut(s)	287, 470
AoxI	GGCC	4 cut(s)	66, 223, 333, 620
ApeKI	GCWGC	3 cut(s)	158, 191, 629
Asp700I	GAANNNNTTC	1 cut(s)	149
AspLEI	GCGC	3 cut(s)	191, 264, 323
AspS9I	GGNCC	3 cut(s)	67, 81, 621
AsuC2I	CCSGG	2 cut(s)	471, 472
AsuHPI	GGTGA	4 cut(s)	449, 467, 658, 665
AvaI	CYCGRG	2 cut(s)	287, 470
AvaII	GGWCC	1 cut(s)	81
BalI	TGGCCA	1 cut(s)	335
BbsI	GAAGAC	2 cut(s)	152, 362
Bbv12I	GWGCWC	1 cut(s)	101
BbvI	GCAGC	3 cut(s)	145, 203, 616
BccI	CCATC	4 cut(s)	185, 206, 344, 404
BceAI	ACGGC	1 cut(s)	397
BcnI	CCSGG	2 cut(s)	471, 472
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	1 cut(s)	164
BfuAI	ACCTGC	1 cut(s)	334
BisI	GCNGC	3 cut(s)	159, 192, 630
BlpI	GCTNAGC	2 cut(s)	53, 100
BlsI	GCNGC	3 cut(s)	160, 193, 631
Bme1390I	CCNGG	2 cut(s)	471, 472
Bme18I	GGWCC	1 cut(s)	81
BmeT110I	CYCGRG	2 cut(s)	287, 470
BmgBI	CACGTC	1 cut(s)	673
BmgT120I	GGNCC	3 cut(s)	67, 81, 621
BmrFI	CCNGG	2 cut(s)	471, 472
BmrI	ACTGGG	1 cut(s)	460
BmuI	ACTGGG	1 cut(s)	460
BpiI	GAAGAC	2 cut(s)	152, 362
Bpu10I	CCTNAGC	1 cut(s)	48
Bpu1102I	GCTNAGC	2 cut(s)	53, 100
BpuMI	CCSGG	2 cut(s)	471, 472
BsaJI	CCNNGG	6 cut(s)	63, 77, 207, 330, 470, 666
BsaWI	WCCGGW	1 cut(s)	313
Bsc4I	CCNNNNNNNGG	2 cut(s)	208, 366
Bse1I	ACTGG	2 cut(s)	455, 598
Bse3DI	GCAATG	3 cut(s)	147, 489, 660
BseDI	CCNNGG	6 cut(s)	63, 77, 207, 330, 470, 666
BseGI	GGATG	2 cut(s)	198, 547
BseLI	CCNNNNNNNGG	2 cut(s)	208, 366
BseMI	GCAATG	3 cut(s)	147, 489, 660
BseMII	CTCAG	3 cut(s)	67, 114, 234
BseNI	ACTGG	2 cut(s)	455, 598
BseRI	GAGGAG	1 cut(s)	163
BseXI	GCAGC	3 cut(s)	145, 203, 616
BseYI	CCCAGC	2 cut(s)	202, 494
BsgI	GTGCAG	1 cut(s)	144
Bsh1236I	CGCG	1 cut(s)	264
BshFI	GGCC	4 cut(s)	68, 225, 335, 622
BsiHKAI	GWGCWC	1 cut(s)	101
BsiHKCI	CYCGRG	2 cut(s)	287, 470
BsiSI	CCGG	2 cut(s)	314, 471
BslI	CCNNNNNNNGG	2 cut(s)	208, 366
BsmAI	GTCTC	1 cut(s)	9
BsnI	GGCC	4 cut(s)	68, 225, 335, 622
BsoBI	CYCGRG	2 cut(s)	287, 470
Bsp1286I	GDGCHC	1 cut(s)	101
Bsp143I	GATC	2 cut(s)	276, 567
Bsp1720I	GCTNAGC	2 cut(s)	53, 100
Bsp19I	CCATGG	1 cut(s)	207
BspACI	CCGC	1 cut(s)	435
BspANI	GGCC	4 cut(s)	68, 225, 335, 622
BspCNI	CTCAG	3 cut(s)	66, 113, 233
BspFNI	CGCG	1 cut(s)	264
BspMI	ACCTGC	1 cut(s)	334
BsrBI	CCGCTC	1 cut(s)	435
BsrDI	GCAATG	3 cut(s)	147, 489, 660
BsrI	ACTGG	2 cut(s)	455, 598
BssECI	CCNNGG	6 cut(s)	63, 77, 207, 330, 470, 666
BssMI	GATC	2 cut(s)	276, 567
BssT1I	CCWWGG	5 cut(s)	63, 77, 207, 330, 666
Bst4CI	ACNGT	1 cut(s)	94
BstAPI	GCANNNNNTGC	1 cut(s)	394
BstC8I	GCNNGC	1 cut(s)	386
BstDEI	CTNAG	4 cut(s)	48, 53, 100, 220
BstDSI	CCRYGG	1 cut(s)	207
BstEII	GGTNACC	1 cut(s)	437
BstF5I	GGATG	2 cut(s)	198, 547
BstFNI	CGCG	1 cut(s)	264
BstHHI	GCGC	3 cut(s)	191, 264, 323
BstKTI	GATC	2 cut(s)	279, 570
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	2 cut(s)	276, 567
BstMWI	GCNNNNNNNGC	4 cut(s)	164, 268, 341, 394
BstPI	GGTNACC	1 cut(s)	437
BstSCI	CCNGG	2 cut(s)	469, 470
BstUI	CGCG	1 cut(s)	264
BstV1I	GCAGC	3 cut(s)	145, 203, 616
BstV2I	GAAGAC	2 cut(s)	152, 362
BstXI	CCANNNNNNTGG	1 cut(s)	184
BsuRI	GGCC	4 cut(s)	68, 225, 335, 622
BtgI	CCRYGG	1 cut(s)	207
BtrI	CACGTC	1 cut(s)	673
BtsCI	GGATG	2 cut(s)	198, 547
BtsI	GCAGTG	1 cut(s)	129
BtsIMutI	CAGTG	3 cut(s)	90, 129, 448
BveI	ACCTGC	1 cut(s)	334
Cac8I	GCNNGC	1 cut(s)	386
CfoI	GCGC	3 cut(s)	191, 264, 323
Cfr13I	GGNCC	3 cut(s)	67, 81, 621
Cfr9I	CCCGGG	1 cut(s)	470
Csp6I	GTAC	1 cut(s)	307
CviAII	CATG	4 cut(s)	37, 85, 208, 234
CviQI	GTAC	1 cut(s)	307
DdeI	CTNAG	4 cut(s)	48, 53, 100, 220
DpnI	GATC	2 cut(s)	278, 569
DpnII	GATC	2 cut(s)	276, 567
DraIII	CACNNNGTG	1 cut(s)	96
EaeI	YGGCCR	1 cut(s)	333
Eco130I	CCWWGG	5 cut(s)	63, 77, 207, 330, 666
Eco147I	AGGCCT	1 cut(s)	225
Eco47I	GGWCC	1 cut(s)	81
Eco57I	CTGAAG	2 cut(s)	120, 598
Eco88I	CYCGRG	2 cut(s)	287, 470
Eco91I	GGTNACC	1 cut(s)	437
EcoO65I	GGTNACC	1 cut(s)	437
EcoT14I	CCWWGG	5 cut(s)	63, 77, 207, 330, 666
ErhI	CCWWGG	5 cut(s)	63, 77, 207, 330, 666
FaeI	CATG	4 cut(s)	40, 88, 211, 237
FaiI	YATR	4 cut(s)	38, 86, 209, 235
FatI	CATG	4 cut(s)	36, 84, 207, 233
Fnu4HI	GCNGC	3 cut(s)	159, 192, 630
FokI	GGATG	2 cut(s)	185, 554
Fsp4HI	GCNGC	3 cut(s)	159, 192, 630
FspBI	CTAG	1 cut(s)	164
GlaI	GCGC	3 cut(s)	190, 263, 322
GluI	GCNGC	3 cut(s)	159, 192, 630
GsaI	CCCAGC	2 cut(s)	206, 498
HaeIII	GGCC	4 cut(s)	68, 225, 335, 622
HapII	CCGG	2 cut(s)	314, 471
HhaI	GCGC	3 cut(s)	191, 264, 323
Hin1II	CATG	4 cut(s)	40, 88, 211, 237
Hin6I	GCGC	3 cut(s)	189, 262, 321
HinP1I	GCGC	3 cut(s)	189, 262, 321
HinfI	GANTC	3 cut(s)	242, 290, 475
HpaII	CCGG	2 cut(s)	314, 471
HphI	GGTGA	4 cut(s)	449, 467, 658, 665
Hpy166II	GTNNAC	1 cut(s)	656
Hpy188I	TCNGA	2 cut(s)	409, 608
Hpy188III	TCNNGA	1 cut(s)	280
Hpy8I	GTNNAC	1 cut(s)	656
HpyAV	CCTTC	3 cut(s)	360, 510, 556
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4IV	ACGT	1 cut(s)	672
HpyCH4V	TGCA	3 cut(s)	161, 237, 344
HpyF10VI	GCNNNNNNNGC	4 cut(s)	164, 268, 341, 394
HpyF3I	CTNAG	4 cut(s)	48, 53, 100, 220
HpySE526I	ACGT	1 cut(s)	672
Hsp92II	CATG	4 cut(s)	40, 88, 211, 237
HspAI	GCGC	3 cut(s)	189, 262, 321
Kzo9I	GATC	2 cut(s)	276, 567
LmnI	GCTCC	2 cut(s)	199, 519
Lsp1109I	GCAGC	3 cut(s)	145, 203, 616
MaeI	CTAG	1 cut(s)	164
MaeII	ACGT	1 cut(s)	672
MaeIII	GTNAC	1 cut(s)	437
MalI	GATC	2 cut(s)	278, 569
MbiI	CCGCTC	1 cut(s)	435
MboI	GATC	2 cut(s)	276, 567
MboII	GAAGA	2 cut(s)	157, 367
MhlI	GDGCHC	1 cut(s)	101
MlsI	TGGCCA	1 cut(s)	335
MluNI	TGGCCA	1 cut(s)	335
MlyI	GAGTC	2 cut(s)	236, 299
MmeI	TCCRAC	1 cut(s)	493
MnlI	CCTC	5 cut(s)	35, 184, 304, 438, 602
Mox20I	TGGCCA	1 cut(s)	335
MroXI	GAANNNNTTC	1 cut(s)	149
MscI	TGGCCA	1 cut(s)	335
MslI	CAYNNNNRTG	2 cut(s)	453, 578
Msp20I	TGGCCA	1 cut(s)	335
MspI	CCGG	2 cut(s)	314, 471
MspR9I	CCNGG	2 cut(s)	471, 472
MvnI	CGCG	1 cut(s)	264
MwoI	GCNNNNNNNGC	4 cut(s)	164, 268, 341, 394
NciI	CCSGG	2 cut(s)	471, 472
NcoI	CCATGG	1 cut(s)	207
NdeII	GATC	2 cut(s)	276, 567
NlaIII	CATG	4 cut(s)	40, 88, 211, 237
NmuCI	GTSAC	1 cut(s)	437
OliI	CACNNNNGTG	1 cut(s)	453
PaeR7I	CTCGAG	1 cut(s)	287
PaqCI	CACCTGC	1 cut(s)	334
PceI	AGGCCT	1 cut(s)	225
PcsI	WCGNNNNNNNCGW	1 cut(s)	261
PdmI	GAANNNNTTC	1 cut(s)	149
PfeI	GAWTC	1 cut(s)	475
PkrI	GCNGC	3 cut(s)	160, 193, 631
PleI	GAGTC	2 cut(s)	236, 298
PpsI	GAGTC	2 cut(s)	236, 298
PspEI	GGTNACC	1 cut(s)	437
PspFI	CCCAGC	2 cut(s)	202, 494
PspPI	GGNCC	3 cut(s)	67, 81, 621
PspXI	VCTCGAGB	1 cut(s)	287
RsaI	GTAC	1 cut(s)	308
RsaNI	GTAC	1 cut(s)	307
RseI	CAYNNNNRTG	2 cut(s)	453, 578
SatI	GCNGC	3 cut(s)	159, 192, 630
Sau3AI	GATC	2 cut(s)	276, 567
Sau96I	GGNCC	3 cut(s)	67, 81, 621
SchI	GAGTC	2 cut(s)	236, 299
ScrFI	CCNGG	2 cut(s)	471, 472
SduI	GDGCHC	1 cut(s)	101
Sfr274I	CTCGAG	1 cut(s)	287
SinI	GGWCC	1 cut(s)	81
SlaI	CTCGAG	1 cut(s)	287
SmaI	CCCGGG	1 cut(s)	472
SmiMI	CAYNNNNRTG	2 cut(s)	453, 578
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
SseBI	AGGCCT	1 cut(s)	225
SsiI	CCGC	1 cut(s)	435
SspMI	CTAG	1 cut(s)	164
StuI	AGGCCT	1 cut(s)	225
StyD4I	CCNGG	2 cut(s)	469, 470
StyI	CCWWGG	5 cut(s)	63, 77, 207, 330, 666
TaaI	ACNGT	1 cut(s)	94
TaiI	ACGT	1 cut(s)	675
TaqI	TCGA	2 cut(s)	275, 288
TfiI	GAWTC	1 cut(s)	475
TscAI	CASTG	3 cut(s)	97, 136, 455
TseFI	GTSAC	1 cut(s)	437
TseI	GCWGC	3 cut(s)	158, 191, 629
Tsp45I	GTSAC	1 cut(s)	437
TspDTI	ATGAA	2 cut(s)	158, 451
TspMI	CCCGGG	1 cut(s)	470
TspRI	CASTG	3 cut(s)	97, 136, 455
VpaK11BI	GGWCC	1 cut(s)	81
XcmI	CCANNNNNNNNNTGG	1 cut(s)	205
XhoI	CTCGAG	1 cut(s)	287
XmaI	CCCGGG	1 cut(s)	470
XmnI	GAANNNNTTC	1 cut(s)	149
XspI	CTAG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.