AT1G32520

TLD

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015142
Physical Location & Seq
Reverse (-)
11758211 .. 11759324
1114 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G32520.1

Sequence Viewer

Length: 720 bp
ATGGCTTCGTGTGCCATCTCAAACTCATTTCATACTGTAACCTTCAAGACCTTGAAGAGAATAAGTCCTTACAACAGTCTATTCGGTTGGAACTCCGGTAAGAAAATAGACAATATCCGGCCGCCGCAACAACCGGCTTACCACGACGATGTCGAAATTCCTTTCTCTCTTTCAATGGTAAACAAAACCTTCCTAAAAGGAAGAGAGTTAAAATGTTGCTACAAGGCAAGCATTGATGGGTTTGGTGCAACAAAGTTCCACGAGCGTTGTGACTTCAAAGGTCCATGTGTTATCATAGCTTACACTAAAGACAAGTCTTTCAAGTTTGGTGGATTTAGTCCGGAAGGATATAGAAGTACTGATGATTATTACGATACATTTGATGCTTTCCTCTTCTATTGGCTCGAGGATTGTGATGACCCAATCGTCCTTCCTAAGGTTGGAGGAAGTGGAGCAGCACTATTTGATTATGCTCGCGGAGGGCCTCAATTTGGAGCTGACGGGCTTCTTATCGGACCGCCTTTAGCTCCCGTGATGGGCGGATTTGCGGGTCCGGATACGAACTCGGGGATTGGTGATTTGAGGGTGGCTAAATCAAGATTGGGATTGTCATATGCTAAGAGGAAAGATGGAAAAGAATCTATATTTGGAGATGAAAATAAGGTTAGTCTTGATGATGTATTGGTCTTTTGTAGTCCTTATATTGCTTCCTTGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

239

Amino Acids

26.29

Weight (kDa)

6.81

Isoelectric Point (pI)

38.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TLD PF07534 63 - 137 2.1e-11 TLDc domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015142)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32520
fragaria_vesca FvH4_5g21680
malus_domestica MD06G1031800.v1.1
prunus_persica Prupe.5G040300_v2.0.a1
pyrus_communis pycom06g02640
rosa_chinensis RchiOBHm_Chr7g0209181
rosa_laevigata RLG00000000565 RLG00000003159
rosa_multiflora Rmu_sc0001701.1_g000004
rosa_roxburghii Rroxscaffold_3G00249660
rosa_rugosa Rorug07G0110000
rosa_samantha Rh7BG239300 Rh7CG259600 Rh7DG250900 Rh7DG484700
rosa_wichuraiana Rw7G020700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 425
AccII CGCG 1 cut(s) 477
AccIII TCCGGA 2 cut(s) 340, 553
AciI CCGC 6 cut(s) 122, 125, 477, 518, 540, 548
AcoI YGGCCR 1 cut(s) 119
AcsI RAATTY 1 cut(s) 156
AfaI GTAC 1 cut(s) 358
AfiI CCNNNNNNNGG 4 cut(s) 436, 440, 491, 536
AgsI TTSAA 5 cut(s) 46, 55, 174, 277, 322
AjuI GAANNNNNNNTTGG 2 cut(s) 630, 662
AluBI AGCT 3 cut(s) 299, 497, 527
AluI AGCT 3 cut(s) 299, 497, 527
Ama87I CYCGRG 2 cut(s) 404, 565
Aor13HI TCCGGA 2 cut(s) 340, 553
AoxI GGCC 2 cut(s) 119, 482
ApeKI GCWGC 1 cut(s) 455
ApoI RAATTY 1 cut(s) 156
AspS9I GGNCC 4 cut(s) 281, 482, 515, 551
AsuHPI GGTGA 1 cut(s) 587
AvaI CYCGRG 2 cut(s) 404, 565
AvaII GGWCC 3 cut(s) 281, 515, 551
AxyI CCTNAGG 1 cut(s) 435
BauI CACGAG 1 cut(s) 260
BbvI GCAGC 1 cut(s) 467
BccI CCATC 4 cut(s) 23, 230, 529, 623
BciVI GTATCC 1 cut(s) 550
BfuI GTATCC 1 cut(s) 550
BisI GCNGC 3 cut(s) 122, 125, 456
BlsI GCNGC 3 cut(s) 123, 126, 457
BmcAI AGTACT 1 cut(s) 358
Bme18I GGWCC 3 cut(s) 281, 515, 551
BmeT110I CYCGRG 2 cut(s) 404, 565
BmgT120I GGNCC 4 cut(s) 281, 482, 515, 551
BmiI GGNNCC 1 cut(s) 552
BmsI GCATC 1 cut(s) 373
BsaWI WCCGGW 3 cut(s) 95, 340, 553
Bsc4I CCNNNNNNNGG 4 cut(s) 436, 440, 491, 536
Bse118I RCCGGY 1 cut(s) 133
Bse21I CCTNAGG 1 cut(s) 435
BseAI TCCGGA 2 cut(s) 340, 553
BseLI CCNNNNNNNGG 4 cut(s) 436, 440, 491, 536
BseX3I CGGCCG 1 cut(s) 119
BseXI GCAGC 1 cut(s) 467
Bsh1236I CGCG 1 cut(s) 477
Bsh1285I CGRYCG 1 cut(s) 122
BshFI GGCC 2 cut(s) 121, 484
BsiEI CGRYCG 1 cut(s) 122
BsiHKCI CYCGRG 2 cut(s) 404, 565
BsiSI CCGG 5 cut(s) 96, 118, 134, 341, 554
BslI CCNNNNNNNGG 4 cut(s) 436, 440, 491, 536
BsnI GGCC 2 cut(s) 121, 484
BsoBI CYCGRG 2 cut(s) 404, 565
Bsp13I TCCGGA 2 cut(s) 340, 553
BspACI CCGC 6 cut(s) 122, 125, 477, 518, 540, 548
BspANI GGCC 2 cut(s) 121, 484
BspEI TCCGGA 2 cut(s) 340, 553
BspFNI CGCG 1 cut(s) 477
BspLI GGNNCC 1 cut(s) 552
BsrFI RCCGGY 1 cut(s) 133
BssAI RCCGGY 1 cut(s) 133
BssSI CACGAG 1 cut(s) 260
Bst2BI CACGAG 1 cut(s) 260
Bst4CI ACNGT 2 cut(s) 37, 77
Bst6I CTCTTC 3 cut(s) 50, 196, 398
BstC8I GCNNGC 2 cut(s) 229, 475
BstDEI CTNAG 2 cut(s) 435, 618
BstENI CCTNNNNNAGG 1 cut(s) 434
BstFNI CGCG 1 cut(s) 477
BstMCI CGRYCG 1 cut(s) 122
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstUI CGCG 1 cut(s) 477
BstV1I GCAGC 1 cut(s) 467
BstZI CGGCCG 1 cut(s) 119
Bsu36I CCTNAGG 1 cut(s) 435
BsuI GTATCC 1 cut(s) 550
BsuRI GGCC 2 cut(s) 121, 484
Cac8I GCNNGC 2 cut(s) 229, 475
Cfr10I RCCGGY 1 cut(s) 133
Cfr13I GGNCC 4 cut(s) 281, 482, 515, 551
CpoI CGGWCCG 1 cut(s) 515
Csp6I GTAC 1 cut(s) 357
CspCI CAANNNNNGTGG 4 cut(s) 248, 283, 310, 345
CspI CGGWCCG 1 cut(s) 515
CviAII CATG 1 cut(s) 285
CviQI GTAC 1 cut(s) 357
DdeI CTNAG 2 cut(s) 435, 618
DrdI GACNNNNNNGTC 1 cut(s) 425
DseDI GACNNNNNNGTC 1 cut(s) 425
EaeI YGGCCR 1 cut(s) 119
EagI CGGCCG 1 cut(s) 119
Eam1104I CTCTTC 3 cut(s) 50, 196, 398
EarI CTCTTC 3 cut(s) 50, 196, 398
EciI GGCGGA 1 cut(s) 555
EclXI CGGCCG 1 cut(s) 119
Eco47I GGWCC 3 cut(s) 281, 515, 551
Eco52I CGGCCG 1 cut(s) 119
Eco81I CCTNAGG 1 cut(s) 435
Eco88I CYCGRG 2 cut(s) 404, 565
EcoNI CCTNNNNNAGG 1 cut(s) 434
EcoO109I RGGNCCY 1 cut(s) 482
FaeI CATG 1 cut(s) 288
FaiI YATR 9 cut(s) 33, 286, 296, 351, 471, 613, 615, 644, 702
FatI CATG 1 cut(s) 284
FauI CCCGC 1 cut(s) 541
FauNDI CATATG 1 cut(s) 613
Fnu4HI GCNGC 3 cut(s) 122, 125, 456
Fsp4HI GCNGC 3 cut(s) 122, 125, 456
GluI GCNGC 3 cut(s) 122, 125, 456
HaeIII GGCC 2 cut(s) 121, 484
HapII CCGG 5 cut(s) 96, 118, 134, 341, 554
Hin1II CATG 1 cut(s) 288
HinfI GANTC 1 cut(s) 638
HpaII CCGG 5 cut(s) 96, 118, 134, 341, 554
HphI GGTGA 1 cut(s) 587
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 1 cut(s) 515
Hpy188III TCNNGA 5 cut(s) 46, 341, 554, 597, 671
Hpy8I GTNNAC 1 cut(s) 181
Hpy99I CGWCG 1 cut(s) 149
HpyAV CCTTC 4 cut(s) 52, 199, 338, 440
HpyCH4III ACNGT 2 cut(s) 37, 77
HpyCH4V TGCA 1 cut(s) 248
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 2 cut(s) 435, 618
Hsp92II CATG 1 cut(s) 288
Kpn2I TCCGGA 2 cut(s) 340, 553
LmnI GCTCC 3 cut(s) 452, 494, 532
LpnPI CCDG 5 cut(s) 109, 131, 147, 354, 567
Lsp1109I GCAGC 1 cut(s) 467
LweI GCATC 1 cut(s) 373
MaeIII GTNAC 2 cut(s) 37, 269
MboII GAAGA 3 cut(s) 67, 213, 385
MluCI AATT 2 cut(s) 156, 488
MmeI TCCRAC 2 cut(s) 68, 421
MnlI CCTC 7 cut(s) 400, 401, 437, 473, 495, 576, 615
MroI TCCGGA 2 cut(s) 340, 553
MseI TTAA 2 cut(s) 209, 718
MslI CAYNNNNRTG 1 cut(s) 147
MspI CCGG 5 cut(s) 96, 118, 134, 341, 554
MvnI CGCG 1 cut(s) 477
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeI CATATG 1 cut(s) 613
NlaIII CATG 1 cut(s) 288
NlaIV GGNNCC 1 cut(s) 552
NmuCI GTSAC 1 cut(s) 269
PaeR7I CTCGAG 1 cut(s) 404
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PfeI GAWTC 1 cut(s) 638
PflFI GACNNNGTC 1 cut(s) 149
PkrI GCNGC 3 cut(s) 123, 126, 457
PspN4I GGNNCC 1 cut(s) 552
PspPI GGNCC 4 cut(s) 281, 482, 515, 551
PspXI VCTCGAGB 1 cut(s) 404
PsyI GACNNNGTC 1 cut(s) 149
RsaI GTAC 1 cut(s) 358
RsaNI GTAC 1 cut(s) 357
RseI CAYNNNNRTG 1 cut(s) 147
Rsr2I CGGWCCG 1 cut(s) 515
RsrII CGGWCCG 1 cut(s) 515
SaqAI TTAA 2 cut(s) 209, 718
SatI GCNGC 3 cut(s) 122, 125, 456
Sau96I GGNCC 4 cut(s) 281, 482, 515, 551
ScaI AGTACT 1 cut(s) 358
SetI ASST 9 cut(s) 44, 53, 191, 283, 301, 441, 499, 529, 666
SfaNI GCATC 1 cut(s) 373
Sfr274I CTCGAG 1 cut(s) 404
SinI GGWCC 3 cut(s) 281, 515, 551
SlaI CTCGAG 1 cut(s) 404
SmiMI CAYNNNNRTG 1 cut(s) 147
SmlI CTYRAG 1 cut(s) 404
SmoI CTYRAG 1 cut(s) 404
Sse9I AATT 2 cut(s) 156, 488
SsiI CCGC 6 cut(s) 122, 125, 477, 518, 540, 548
TaaI ACNGT 2 cut(s) 37, 77
TaqI TCGA 2 cut(s) 153, 405
TasI AATT 2 cut(s) 156, 488
TatI WGTACW 1 cut(s) 356
TauI GCSGC 2 cut(s) 124, 127
TfiI GAWTC 1 cut(s) 638
Tru1I TTAA 2 cut(s) 209, 718
Tru9I TTAA 2 cut(s) 209, 718
TseFI GTSAC 1 cut(s) 269
TseI GCWGC 1 cut(s) 455
Tsp45I GTSAC 1 cut(s) 269
TspDTI ATGAA 2 cut(s) 20, 669
Tth111I GACNNNGTC 1 cut(s) 149
VpaK11BI GGWCC 3 cut(s) 281, 515, 551
XagI CCTNNNNNAGG 1 cut(s) 434
XapI RAATTY 1 cut(s) 156
XhoI CTCGAG 1 cut(s) 404
ZrmI AGTACT 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.