Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0015142

Physical Location & Seq

Genomic Coordinates Forward (+)

4422702 .. 4429435

Gene Structure 6734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G040300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCTTCTTGCTTCTCAAACCACACTGTATGTTATTTGTGGAAGAGAAGAAGCAGCCCATGTAGCTTGTTTGGGTGGAACATAGGCAAGAGAAAACAGGATGAATTGCCACAGACCAACAAGTACCATGAAACTGATCTTCCATTCTCTCCTTCTCTGCTTGGCAAAACTTTCTTAAGTGGTAGGGAACTGAAGTGTTGCTATAAGGCCACCATTGATGGATTTAGTGCAGCTAATTTCCACAACTGCTGTGATTTCAAGGGGCCATGCGCCATAATTGGCTACACAAACAAGTCCTTCAAGTTTGGGGCATTCAACCCTGAAGGCTACAGAAGCACAGATGATTACTATGACACTTTTGATGCATTCCTCTTCTACTGGACAGATAATGAAATAGCTGACCCAATTGTGCTACCCAAAGTAGGAGGCAGTGGTGCAGCCCTTTTCGATTATGCTCGGGGCGGGCCACAATTTGGGGCCGATGGGCTGCTTATCGGGCCACCTCTAGCGCCGGTTATGGGTGGTTTTGCAGGTCCGGATACTAATTCGGGTATTGGTGATTTAAGGCAAGCCAAATCTAGATTAGGATTGTCATATGCAAAGAGGGAAGATGGGAAGGAGTCACTTTTTGGGGATGAGTCTAGAGCAACCCTTGAAGAAGTTGAAGTTTATTGTAGCCCTCAAATTGCAAGCTTGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TLD

Protein Analysis

234

Amino Acids

25.63

Weight (kDa)

5.66

Isoelectric Point (pI)

49.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32520
fragaria_vesca	FvH4_5g21680
malus_domestica	MD06G1031800.v1.1
prunus_persica	Prupe.5G040300_v2.0.a1
pyrus_communis	pycom06g02640
rosa_chinensis	RchiOBHm_Chr7g0209181
rosa_laevigata	RLG00000000565 RLG00000003159
rosa_multiflora	Rmu_sc0001701.1_g000004
rosa_roxburghii	Rroxscaffold_3G00249660
rosa_rugosa	Rorug07G0110000
rosa_samantha	Rh7BG239300 Rh7CG259600 Rh7DG250900 Rh7DG484700
rosa_wichuraiana	Rw7G020700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	521
AccB7I	CCANNNNNTGG	1 cut(s)	473
AccIII	TCCGGA	1 cut(s)	535
AciI	CCGC	1 cut(s)	462
AcuI	CTGAAG	2 cut(s)	212, 342
AfaI	GTAC	2 cut(s)	125, 698
AfiI	CCNNNNNNNGG	3 cut(s)	422, 473, 518
AflII	CTTAAG	1 cut(s)	175
AgsI	TTSAA	5 cut(s)	259, 301, 316, 656, 665
AluBI	AGCT	4 cut(s)	66, 233, 398, 693
AluI	AGCT	4 cut(s)	66, 233, 398, 693
Ama87I	CYCGRG	1 cut(s)	456
Aor13HI	TCCGGA	1 cut(s)	535
AoxI	GGCC	5 cut(s)	207, 263, 464, 477, 497
ApeKI	GCWGC	4 cut(s)	54, 230, 437, 487
AspLEI	GCGC	2 cut(s)	272, 511
AspS9I	GGNCC	5 cut(s)	263, 464, 477, 497, 533
AsuHPI	GGTGA	1 cut(s)	569
AvaI	CYCGRG	1 cut(s)	456
AvaII	GGWCC	1 cut(s)	533
BbvI	GCAGC	4 cut(s)	66, 242, 449, 474
BccI	CCATC	3 cut(s)	212, 476, 605
BciVI	GTATCC	1 cut(s)	532
BfaI	CTAG	3 cut(s)	506, 579, 642
BfmI	CTRYAG	1 cut(s)	328
BfoI	RGCGCY	1 cut(s)	512
BfrI	CTTAAG	1 cut(s)	175
BfuAI	ACCTGC	1 cut(s)	521
BfuI	GTATCC	1 cut(s)	532
BisI	GCNGC	4 cut(s)	55, 231, 438, 488
BlsI	GCNGC	4 cut(s)	56, 232, 439, 489
Bme18I	GGWCC	1 cut(s)	533
BmeT110I	CYCGRG	1 cut(s)	456
BmgT120I	GGNCC	5 cut(s)	263, 464, 477, 497, 533
BmiI	GGNNCC	2 cut(s)	264, 478
BmsI	GCATC	1 cut(s)	352
BsaWI	WCCGGW	1 cut(s)	535
Bsc4I	CCNNNNNNNGG	3 cut(s)	422, 473, 518
Bse118I	RCCGGY	1 cut(s)	511
Bse1I	ACTGG	1 cut(s)	383
BseAI	TCCGGA	1 cut(s)	535
BseGI	GGATG	2 cut(s)	106, 640
BseLI	CCNNNNNNNGG	3 cut(s)	422, 473, 518
BseNI	ACTGG	1 cut(s)	383
BseXI	GCAGC	4 cut(s)	66, 242, 449, 474
BsgI	GTGCAG	2 cut(s)	249, 456
BshFI	GGCC	5 cut(s)	209, 265, 466, 479, 499
BsiHKCI	CYCGRG	1 cut(s)	456
BsiSI	CCGG	2 cut(s)	512, 536
BslI	CCNNNNNNNGG	3 cut(s)	422, 473, 518
BsmI	GAATGC	2 cut(s)	311, 365
BsnI	GGCC	5 cut(s)	209, 265, 466, 479, 499
BsoBI	CYCGRG	1 cut(s)	456
Bsp13I	TCCGGA	1 cut(s)	535
Bsp143I	GATC	1 cut(s)	136
BspACI	CCGC	1 cut(s)	462
BspANI	GGCC	5 cut(s)	209, 265, 466, 479, 499
BspEI	TCCGGA	1 cut(s)	535
BspLI	GGNNCC	2 cut(s)	264, 478
BspMI	ACCTGC	1 cut(s)	521
BspTI	CTTAAG	1 cut(s)	175
BsrFI	RCCGGY	1 cut(s)	511
BsrI	ACTGG	1 cut(s)	383
BssAI	RCCGGY	1 cut(s)	511
BssMI	GATC	1 cut(s)	136
Bst4CI	ACNGT	1 cut(s)	28
Bst6I	CTCTTC	2 cut(s)	38, 377
BstAFI	CTTAAG	1 cut(s)	175
BstC8I	GCNNGC	3 cut(s)	464, 570, 691
BstF5I	GGATG	2 cut(s)	106, 640
BstH2I	RGCGCY	1 cut(s)	512
BstHHI	GCGC	2 cut(s)	272, 511
BstKTI	GATC	1 cut(s)	139
BstMBI	GATC	1 cut(s)	136
BstMWI	GCNNNNNNNGC	3 cut(s)	63, 333, 496
BstSFI	CTRYAG	1 cut(s)	328
BstV1I	GCAGC	4 cut(s)	66, 242, 449, 474
BsuI	GTATCC	1 cut(s)	532
BsuRI	GGCC	5 cut(s)	209, 265, 466, 479, 499
BtsCI	GGATG	2 cut(s)	106, 640
BtsI	GCAGTG	1 cut(s)	436
BtsIMutI	CAGTG	2 cut(s)	24, 436
BveI	ACCTGC	1 cut(s)	521
Cac8I	GCNNGC	3 cut(s)	464, 570, 691
CfoI	GCGC	2 cut(s)	272, 511
Cfr10I	RCCGGY	1 cut(s)	511
Cfr13I	GGNCC	5 cut(s)	263, 464, 477, 497, 533
Csp6I	GTAC	2 cut(s)	124, 697
CviAII	CATG	3 cut(s)	60, 128, 267
CviQI	GTAC	2 cut(s)	124, 697
DpnI	GATC	1 cut(s)	138
DpnII	GATC	1 cut(s)	136
Eam1104I	CTCTTC	2 cut(s)	38, 377
EarI	CTCTTC	2 cut(s)	38, 377
Eco47I	GGWCC	1 cut(s)	533
Eco57I	CTGAAG	2 cut(s)	212, 342
Eco88I	CYCGRG	1 cut(s)	456
EcoT22I	ATGCAT	1 cut(s)	367
FaeI	CATG	3 cut(s)	63, 131, 270
FatI	CATG	3 cut(s)	59, 127, 266
FauI	CCCGC	1 cut(s)	455
FauNDI	CATATG	1 cut(s)	595
Fnu4HI	GCNGC	4 cut(s)	55, 231, 438, 488
FokI	GGATG	2 cut(s)	113, 647
Fsp4HI	GCNGC	4 cut(s)	55, 231, 438, 488
FspBI	CTAG	3 cut(s)	506, 579, 642
GlaI	GCGC	2 cut(s)	271, 510
GluI	GCNGC	4 cut(s)	55, 231, 438, 488
HaeII	RGCGCY	1 cut(s)	512
HaeIII	GGCC	5 cut(s)	209, 265, 466, 479, 499
HapII	CCGG	2 cut(s)	512, 536
HhaI	GCGC	2 cut(s)	272, 511
Hin1II	CATG	3 cut(s)	63, 131, 270
Hin6I	GCGC	2 cut(s)	270, 509
HinP1I	GCGC	2 cut(s)	270, 509
HindIII	AAGCTT	1 cut(s)	691
HinfI	GANTC	2 cut(s)	620, 638
HpaII	CCGG	2 cut(s)	512, 536
HphI	GGTGA	1 cut(s)	569
Hpy188III	TCNNGA	3 cut(s)	536, 579, 642
HpyAV	CCTTC	4 cut(s)	162, 307, 317, 610
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4V	TGCA	6 cut(s)	230, 365, 437, 530, 599, 689
HpyF10VI	GCNNNNNNNGC	3 cut(s)	63, 333, 496
Hsp92II	CATG	3 cut(s)	63, 131, 270
HspAI	GCGC	2 cut(s)	270, 509
Kpn2I	TCCGGA	1 cut(s)	535
Kzo9I	GATC	1 cut(s)	136
LpnPI	CCDG	6 cut(s)	83, 333, 364, 516, 525, 549
Lsp1109I	GCAGC	4 cut(s)	66, 242, 449, 474
LweI	GCATC	1 cut(s)	352
MaeI	CTAG	3 cut(s)	506, 579, 642
MaeIII	GTNAC	1 cut(s)	621
MalI	GATC	1 cut(s)	138
MboI	GATC	1 cut(s)	136
MboII	GAAGA	6 cut(s)	55, 60, 131, 364, 620, 668
MfeI	CAATTG	1 cut(s)	405
MluCI	AATT	7 cut(s)	104, 235, 276, 405, 470, 544, 684
MlyI	GAGTC	2 cut(s)	629, 647
MnlI	CCTC	5 cut(s)	380, 419, 513, 597, 690
Mph1103I	ATGCAT	1 cut(s)	367
MroI	TCCGGA	1 cut(s)	535
MseI	TTAA	2 cut(s)	176, 563
MspCI	CTTAAG	1 cut(s)	175
MspI	CCGG	2 cut(s)	512, 536
MunI	CAATTG	1 cut(s)	405
Mva1269I	GAATGC	2 cut(s)	311, 365
MwoI	GCNNNNNNNGC	3 cut(s)	63, 333, 496
NdeI	CATATG	1 cut(s)	595
NdeII	GATC	1 cut(s)	136
NlaIII	CATG	3 cut(s)	63, 131, 270
NlaIV	GGNNCC	2 cut(s)	264, 478
NmuCI	GTSAC	1 cut(s)	621
NsiI	ATGCAT	1 cut(s)	367
PctI	GAATGC	2 cut(s)	311, 365
PflMI	CCANNNNNTGG	1 cut(s)	473
PkrI	GCNGC	4 cut(s)	56, 232, 439, 489
PleI	GAGTC	2 cut(s)	628, 646
PpsI	GAGTC	2 cut(s)	628, 646
PspN4I	GGNNCC	2 cut(s)	264, 478
PspPI	GGNCC	5 cut(s)	263, 464, 477, 497, 533
RsaI	GTAC	2 cut(s)	125, 698
RsaNI	GTAC	2 cut(s)	124, 697
SaqAI	TTAA	2 cut(s)	176, 563
SatI	GCNGC	4 cut(s)	55, 231, 438, 488
Sau3AI	GATC	1 cut(s)	136
Sau96I	GGNCC	5 cut(s)	263, 464, 477, 497, 533
SchI	GAGTC	2 cut(s)	629, 647
SetI	ASST	6 cut(s)	68, 235, 400, 505, 535, 695
SfaNI	GCATC	1 cut(s)	352
SfcI	CTRYAG	1 cut(s)	328
SinI	GGWCC	1 cut(s)	533
SmlI	CTYRAG	1 cut(s)	175
SmoI	CTYRAG	1 cut(s)	175
Sse9I	AATT	7 cut(s)	104, 235, 276, 405, 470, 544, 684
SsiI	CCGC	1 cut(s)	462
SspMI	CTAG	3 cut(s)	506, 579, 642
TaaI	ACNGT	1 cut(s)	28
TaqI	TCGA	1 cut(s)	447
TasI	AATT	7 cut(s)	104, 235, 276, 405, 470, 544, 684
TatI	WGTACW	1 cut(s)	696
Tru1I	TTAA	2 cut(s)	176, 563
Tru9I	TTAA	2 cut(s)	176, 563
TscAI	CASTG	2 cut(s)	31, 436
TseFI	GTSAC	1 cut(s)	621
TseI	GCWGC	4 cut(s)	54, 230, 437, 487
Tsp45I	GTSAC	1 cut(s)	621
TspDTI	ATGAA	3 cut(s)	117, 144, 405
TspRI	CASTG	2 cut(s)	31, 436
Van91I	CCANNNNNTGG	1 cut(s)	473
Vha464I	CTTAAG	1 cut(s)	175
VpaK11BI	GGWCC	1 cut(s)	533
XbaI	TCTAGA	2 cut(s)	578, 641
XspI	CTAG	3 cut(s)	506, 579, 642
Zsp2I	ATGCAT	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.