Rh7DG484700

TLD

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0015142
Physical Location & Seq
Reverse (-)
69043803 .. 69050291
6489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG484700.1

Sequence Viewer

Length: 636 bp
ATGGCTTGTTACTTCTCAAACACTGTCTCTTCTGGTTCTGGATGGGAGAGAAGCCCTTATAGCTTGTTTGGGTGGAATATAGGCAAGCCAAAACTTGATGAAGATCCAAGGCCACAGATCAAGTATCATGATACTACTGATCTTCCATTTCTACCTTCTCTTCTGGACAAAACATTCTTAAGAGGTAGGGAACTCAAATGTTGCTATAAGGCCACCATTGATGGATTTAGTGCAGCTGATTTCCACAACTGTTGTGACTTCAAGGGGCCATGTGCCATAGTTGGCTACACGAACAAGTCCTTCAAGTTTGGTGCATTCAACCCTGAAGGCTATAGAAGCACAGATGATTACTATGACAGAGGCAGTGGTGCAGCCCTTTTTTATTATGCTCGGGGTGGGCCACAATTTGGGGCAGATGGGCTGCTCATTGGCCCACCTCTAGCTCCGGTTATGGGTGGGTTTGCTGGCCCGGATACTAATTCGGGTATTGGTGATTTAAGACAAGCCAAATCTAGATTAGGATTGTCATATGCAAAGAGAAAAGATGGAAAGGAGTCACTTTTTGGGGATGAGAATAGAGCAACCCTTGAAGAAGTAGAAGTCTATTGTAGTCCTCAAATTGCAAGCTTGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

211

Amino Acids

23.17

Weight (kDa)

6.14

Isoelectric Point (pI)

39.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TLD PF07534 58 - 128 2.4e-08 TLDc domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015142)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32520
fragaria_vesca FvH4_5g21680
malus_domestica MD06G1031800.v1.1
prunus_persica Prupe.5G040300_v2.0.a1
pyrus_communis pycom06g02640
rosa_chinensis RchiOBHm_Chr7g0209181
rosa_laevigata RLG00000000565 RLG00000003159
rosa_multiflora Rmu_sc0001701.1_g000004
rosa_roxburghii Rroxscaffold_3G00249660
rosa_rugosa Rorug07G0110000
rosa_samantha Rh7BG239300 Rh7CG259600 Rh7DG250900 Rh7DG484700
rosa_wichuraiana Rw7G020700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 407
AclWI GGATC 1 cut(s) 98
AcuI CTGAAG 1 cut(s) 345
AfaI GTAC 1 cut(s) 632
AfiI CCNNNNNNNGG 2 cut(s) 407, 452
AflII CTTAAG 1 cut(s) 178
AgsI TTSAA 4 cut(s) 262, 304, 319, 590
AluBI AGCT 4 cut(s) 63, 236, 443, 627
AluI AGCT 4 cut(s) 63, 236, 443, 627
Alw26I GTCTC 1 cut(s) 31
AlwI GGATC 1 cut(s) 98
Ama87I CYCGRG 1 cut(s) 390
AoxI GGCC 6 cut(s) 110, 210, 266, 398, 430, 466
ApeKI GCWGC 3 cut(s) 233, 371, 421
AspS9I GGNCC 4 cut(s) 266, 398, 431, 467
AsuC2I CCSGG 1 cut(s) 470
AsuHPI GGTGA 1 cut(s) 503
AvaI CYCGRG 1 cut(s) 390
BbvI GCAGC 3 cut(s) 245, 383, 408
BccI CCATC 4 cut(s) 36, 215, 410, 539
BciVI GTATCC 1 cut(s) 466
BcnI CCSGG 1 cut(s) 470
BcoDI GTCTC 1 cut(s) 31
BfaI CTAG 2 cut(s) 440, 513
BfmI CTRYAG 1 cut(s) 331
BfrI CTTAAG 1 cut(s) 178
BfuI GTATCC 1 cut(s) 466
BisI GCNGC 3 cut(s) 234, 372, 422
BlsI GCNGC 3 cut(s) 235, 373, 423
Bme1390I CCNGG 1 cut(s) 470
BmeT110I CYCGRG 1 cut(s) 390
BmgT120I GGNCC 4 cut(s) 266, 398, 431, 467
BmiI GGNNCC 1 cut(s) 267
BmrFI CCNGG 1 cut(s) 470
BpuMI CCSGG 1 cut(s) 470
BsaBI GATNNNNATC 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 107
BsaWI WCCGGW 1 cut(s) 445
Bsc4I CCNNNNNNNGG 2 cut(s) 407, 452
Bse8I GATNNNNATC 1 cut(s) 102
BseDI CCNNGG 1 cut(s) 107
BseGI GGATG 2 cut(s) 47, 574
BseJI GATNNNNATC 1 cut(s) 102
BseLI CCNNNNNNNGG 2 cut(s) 407, 452
BseXI GCAGC 3 cut(s) 245, 383, 408
BsgI GTGCAG 2 cut(s) 252, 390
BshFI GGCC 6 cut(s) 112, 212, 268, 400, 432, 468
BsiHKCI CYCGRG 1 cut(s) 390
BsiSI CCGG 2 cut(s) 446, 470
BslI CCNNNNNNNGG 2 cut(s) 407, 452
BsmAI GTCTC 1 cut(s) 31
BsmI GAATGC 1 cut(s) 314
BsnI GGCC 6 cut(s) 112, 212, 268, 400, 432, 468
BsoBI CYCGRG 1 cut(s) 390
Bsp143I GATC 3 cut(s) 103, 117, 139
BspANI GGCC 6 cut(s) 112, 212, 268, 400, 432, 468
BspHI TCATGA 1 cut(s) 127
BspLI GGNNCC 1 cut(s) 267
BspPI GGATC 1 cut(s) 98
BspTI CTTAAG 1 cut(s) 178
BssECI CCNNGG 1 cut(s) 107
BssMI GATC 3 cut(s) 103, 117, 139
BssT1I CCWWGG 1 cut(s) 107
Bst4CI ACNGT 2 cut(s) 25, 251
Bst6I CTCTTC 2 cut(s) 34, 165
BstAFI CTTAAG 1 cut(s) 178
BstC8I GCNNGC 3 cut(s) 86, 466, 625
BstF5I GGATG 2 cut(s) 47, 574
BstKTI GATC 3 cut(s) 106, 120, 142
BstMAI GTCTC 1 cut(s) 31
BstMBI GATC 3 cut(s) 103, 117, 139
BstMWI GCNNNNNNNGC 2 cut(s) 60, 336
BstSCI CCNGG 1 cut(s) 468
BstSFI CTRYAG 1 cut(s) 331
BstV1I GCAGC 3 cut(s) 245, 383, 408
BstX2I RGATCY 1 cut(s) 103
BstYI RGATCY 1 cut(s) 103
BsuI GTATCC 1 cut(s) 466
BsuRI GGCC 6 cut(s) 112, 212, 268, 400, 432, 468
BtsCI GGATG 2 cut(s) 47, 574
BtsI GCAGTG 1 cut(s) 370
BtsIMutI CAGTG 2 cut(s) 21, 370
Cac8I GCNNGC 3 cut(s) 86, 466, 625
CciI TCATGA 1 cut(s) 127
Cfr13I GGNCC 4 cut(s) 266, 398, 431, 467
Csp6I GTAC 1 cut(s) 631
CspCI CAANNNNNGTGG 2 cut(s) 233, 268
CviAII CATG 2 cut(s) 128, 270
CviQI GTAC 1 cut(s) 631
DpnI GATC 3 cut(s) 105, 119, 141
DpnII GATC 3 cut(s) 103, 117, 139
Eam1104I CTCTTC 2 cut(s) 34, 165
EarI CTCTTC 2 cut(s) 34, 165
Eco130I CCWWGG 1 cut(s) 107
Eco57I CTGAAG 1 cut(s) 345
Eco88I CYCGRG 1 cut(s) 390
EcoT14I CCWWGG 1 cut(s) 107
ErhI CCWWGG 1 cut(s) 107
FaeI CATG 2 cut(s) 131, 273
FatI CATG 2 cut(s) 127, 269
FauNDI CATATG 1 cut(s) 529
Fnu4HI GCNGC 3 cut(s) 234, 372, 422
FokI GGATG 2 cut(s) 54, 581
Fsp4HI GCNGC 3 cut(s) 234, 372, 422
FspBI CTAG 2 cut(s) 440, 513
GluI GCNGC 3 cut(s) 234, 372, 422
HaeIII GGCC 6 cut(s) 112, 212, 268, 400, 432, 468
HapII CCGG 2 cut(s) 446, 470
Hin1II CATG 2 cut(s) 131, 273
HindIII AAGCTT 1 cut(s) 625
HinfI GANTC 1 cut(s) 554
HpaII CCGG 2 cut(s) 446, 470
HphI GGTGA 1 cut(s) 503
Hpy188III TCNNGA 4 cut(s) 39, 128, 164, 513
HpyAV CCTTC 3 cut(s) 165, 310, 320
HpyCH4III ACNGT 2 cut(s) 25, 251
HpyCH4V TGCA 5 cut(s) 233, 314, 371, 533, 623
HpyF10VI GCNNNNNNNGC 2 cut(s) 60, 336
Hsp92II CATG 2 cut(s) 131, 273
Kzo9I GATC 3 cut(s) 103, 117, 139
LmnI GCTCC 1 cut(s) 448
LpnPI CCDG 7 cut(s) 18, 24, 149, 336, 450, 459, 483
Lsp1109I GCAGC 3 cut(s) 245, 383, 408
MaeI CTAG 2 cut(s) 440, 513
MaeIII GTNAC 3 cut(s) 8, 254, 555
MalI GATC 3 cut(s) 105, 119, 141
MboI GATC 3 cut(s) 103, 117, 139
MboII GAAGA 5 cut(s) 21, 113, 134, 152, 602
MflI RGATCY 1 cut(s) 103
MluCI AATT 3 cut(s) 404, 478, 618
MlyI GAGTC 1 cut(s) 563
MnlI CCTC 4 cut(s) 176, 353, 447, 624
MseI TTAA 2 cut(s) 179, 497
MspA1I CMGCKG 1 cut(s) 236
MspCI CTTAAG 1 cut(s) 178
MspI CCGG 2 cut(s) 446, 470
MspR9I CCNGG 1 cut(s) 470
Mva1269I GAATGC 1 cut(s) 314
MwoI GCNNNNNNNGC 2 cut(s) 60, 336
NciI CCSGG 1 cut(s) 470
NdeI CATATG 1 cut(s) 529
NdeII GATC 3 cut(s) 103, 117, 139
NlaIII CATG 2 cut(s) 131, 273
NlaIV GGNNCC 1 cut(s) 267
NmuCI GTSAC 2 cut(s) 254, 555
PagI TCATGA 1 cut(s) 127
PctI GAATGC 1 cut(s) 314
PflMI CCANNNNNTGG 1 cut(s) 407
PkrI GCNGC 3 cut(s) 235, 373, 423
PleI GAGTC 1 cut(s) 562
PpsI GAGTC 1 cut(s) 562
PspN4I GGNNCC 1 cut(s) 267
PspPI GGNCC 4 cut(s) 266, 398, 431, 467
PsuI RGATCY 1 cut(s) 103
PvuII CAGCTG 1 cut(s) 236
RsaI GTAC 1 cut(s) 632
RsaNI GTAC 1 cut(s) 631
SaqAI TTAA 2 cut(s) 179, 497
SatI GCNGC 3 cut(s) 234, 372, 422
Sau3AI GATC 3 cut(s) 103, 117, 139
Sau96I GGNCC 4 cut(s) 266, 398, 431, 467
SchI GAGTC 1 cut(s) 563
ScrFI CCNGG 1 cut(s) 470
SetI ASST 7 cut(s) 65, 157, 187, 238, 439, 445, 629
SfcI CTRYAG 1 cut(s) 331
SmlI CTYRAG 1 cut(s) 178
SmoI CTYRAG 1 cut(s) 178
Sse9I AATT 3 cut(s) 404, 478, 618
SspMI CTAG 2 cut(s) 440, 513
StyD4I CCNGG 1 cut(s) 468
StyI CCWWGG 1 cut(s) 107
TaaI ACNGT 2 cut(s) 25, 251
TasI AATT 3 cut(s) 404, 478, 618
TatI WGTACW 1 cut(s) 630
Tru1I TTAA 2 cut(s) 179, 497
Tru9I TTAA 2 cut(s) 179, 497
TscAI CASTG 2 cut(s) 28, 370
TseFI GTSAC 2 cut(s) 254, 555
TseI GCWGC 3 cut(s) 233, 371, 421
Tsp45I GTSAC 2 cut(s) 254, 555
TspDTI ATGAA 1 cut(s) 114
TspRI CASTG 2 cut(s) 28, 370
Van91I CCANNNNNTGG 1 cut(s) 407
Vha464I CTTAAG 1 cut(s) 178
XbaI TCTAGA 1 cut(s) 512
XspI CTAG 2 cut(s) 440, 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.