RLG00000000565

TLD

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0015142
Physical Location & Seq
Forward (+)
2022263 .. 2028701
6439 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000565

Sequence Viewer

Length: 678 bp
ATGGCTTGTTACTTCTCAAACACTGTCTCTTCTGGTTCTGGATGGGAGAGAAGCCCTTATAGCTTGTTTGGGTGGAATATAGGCAAGCCAAAACTTGATGAAGATCCAAGGCCACAGATCAAGTACCATGATACTACTGATCTTCCATTTCTACCTTCTCTTCTGGACAAAACATTCTTAAGAGGTAGGGAACTCAAATGTTGCTATAAGGCCACCATTGATGGATTTAGTGCAGCTGATTTCCACAACTGTTGTGACTTCAAGGGGCCATGTGCCATAGTTGGCTACACGAACAAGTCCTTCAAGTTTGGTGCATTCAACCCTGAAGGCTATAGAAGCACAGATGATTACTATGACAATAATGAGAAAACTGATGACCCAATTGTTCTGCCTAAAGTGGGAGGCAGTGGTGCAGCCCTTTTTGATTATGCTCGGGGTGGGCCACAATTTGGGGCAGATGGGCTGCTCATTGGCCCACCTCTAGCTCCGGTTATGGGTGGGTTTGCTGGCCCGGATACTAATTCGGGTATTGGTGATTTAAGACAAGCCAAATCTAGATTAGGATTGTCATATGCAAAGAGAAAAGATGGAAAGGAGTCACTTTTTGGGGATGAGAATAGAGCAACCCTTGAAGAAGTAGAAGTCTATTGTAGTCCTCAAATTGCAAGCTTGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

226

Amino Acids

24.58

Weight (kDa)

5.28

Isoelectric Point (pI)

37.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TLD PF07534 58 - 123 2.2e-08 TLDc domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015142)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32520
fragaria_vesca FvH4_5g21680
malus_domestica MD06G1031800.v1.1
prunus_persica Prupe.5G040300_v2.0.a1
pyrus_communis pycom06g02640
rosa_chinensis RchiOBHm_Chr7g0209181
rosa_laevigata RLG00000000565 RLG00000003159
rosa_multiflora Rmu_sc0001701.1_g000004
rosa_roxburghii Rroxscaffold_3G00249660
rosa_rugosa Rorug07G0110000
rosa_samantha Rh7BG239300 Rh7CG259600 Rh7DG250900 Rh7DG484700
rosa_wichuraiana Rw7G020700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 449
AclWI GGATC 1 cut(s) 98
AcuI CTGAAG 1 cut(s) 345
AfaI GTAC 2 cut(s) 125, 674
AfiI CCNNNNNNNGG 3 cut(s) 398, 449, 494
AflII CTTAAG 1 cut(s) 178
AgsI TTSAA 4 cut(s) 262, 304, 319, 632
AluBI AGCT 4 cut(s) 63, 236, 485, 669
AluI AGCT 4 cut(s) 63, 236, 485, 669
Alw26I GTCTC 1 cut(s) 31
AlwI GGATC 1 cut(s) 98
Ama87I CYCGRG 1 cut(s) 432
AoxI GGCC 6 cut(s) 110, 210, 266, 440, 472, 508
ApeKI GCWGC 3 cut(s) 233, 413, 463
AspS9I GGNCC 4 cut(s) 266, 440, 473, 509
AsuC2I CCSGG 1 cut(s) 512
AsuHPI GGTGA 1 cut(s) 545
AvaI CYCGRG 1 cut(s) 432
BbvI GCAGC 3 cut(s) 245, 425, 450
BccI CCATC 4 cut(s) 36, 215, 452, 581
BciVI GTATCC 1 cut(s) 508
BcnI CCSGG 1 cut(s) 512
BcoDI GTCTC 1 cut(s) 31
BfaI CTAG 2 cut(s) 482, 555
BfmI CTRYAG 1 cut(s) 331
BfrI CTTAAG 1 cut(s) 178
BfuI GTATCC 1 cut(s) 508
BisI GCNGC 3 cut(s) 234, 414, 464
BlsI GCNGC 3 cut(s) 235, 415, 465
Bme1390I CCNGG 1 cut(s) 512
BmeT110I CYCGRG 1 cut(s) 432
BmgT120I GGNCC 4 cut(s) 266, 440, 473, 509
BmiI GGNNCC 1 cut(s) 267
BmrFI CCNGG 1 cut(s) 512
BpuMI CCSGG 1 cut(s) 512
BsaBI GATNNNNATC 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 107
BsaWI WCCGGW 1 cut(s) 487
Bsc4I CCNNNNNNNGG 3 cut(s) 398, 449, 494
Bse8I GATNNNNATC 1 cut(s) 102
BseDI CCNNGG 1 cut(s) 107
BseGI GGATG 2 cut(s) 47, 616
BseJI GATNNNNATC 1 cut(s) 102
BseLI CCNNNNNNNGG 3 cut(s) 398, 449, 494
BseXI GCAGC 3 cut(s) 245, 425, 450
BsgI GTGCAG 2 cut(s) 252, 432
BshFI GGCC 6 cut(s) 112, 212, 268, 442, 474, 510
BsiHKCI CYCGRG 1 cut(s) 432
BsiSI CCGG 2 cut(s) 488, 512
BslI CCNNNNNNNGG 3 cut(s) 398, 449, 494
BsmAI GTCTC 1 cut(s) 31
BsmI GAATGC 1 cut(s) 314
BsnI GGCC 6 cut(s) 112, 212, 268, 442, 474, 510
BsoBI CYCGRG 1 cut(s) 432
Bsp143I GATC 3 cut(s) 103, 117, 139
BspANI GGCC 6 cut(s) 112, 212, 268, 442, 474, 510
BspLI GGNNCC 1 cut(s) 267
BspPI GGATC 1 cut(s) 98
BspTI CTTAAG 1 cut(s) 178
BssECI CCNNGG 1 cut(s) 107
BssMI GATC 3 cut(s) 103, 117, 139
BssT1I CCWWGG 1 cut(s) 107
Bst4CI ACNGT 2 cut(s) 25, 251
Bst6I CTCTTC 2 cut(s) 34, 165
BstAFI CTTAAG 1 cut(s) 178
BstC8I GCNNGC 3 cut(s) 86, 508, 667
BstF5I GGATG 2 cut(s) 47, 616
BstKTI GATC 3 cut(s) 106, 120, 142
BstMAI GTCTC 1 cut(s) 31
BstMBI GATC 3 cut(s) 103, 117, 139
BstMWI GCNNNNNNNGC 2 cut(s) 60, 336
BstSCI CCNGG 1 cut(s) 510
BstSFI CTRYAG 1 cut(s) 331
BstV1I GCAGC 3 cut(s) 245, 425, 450
BstX2I RGATCY 1 cut(s) 103
BstYI RGATCY 1 cut(s) 103
BsuI GTATCC 1 cut(s) 508
BsuRI GGCC 6 cut(s) 112, 212, 268, 442, 474, 510
BtsCI GGATG 2 cut(s) 47, 616
BtsI GCAGTG 1 cut(s) 412
BtsIMutI CAGTG 2 cut(s) 21, 412
Cac8I GCNNGC 3 cut(s) 86, 508, 667
Cfr13I GGNCC 4 cut(s) 266, 440, 473, 509
Csp6I GTAC 2 cut(s) 124, 673
CspCI CAANNNNNGTGG 2 cut(s) 233, 268
CviAII CATG 2 cut(s) 128, 270
CviQI GTAC 2 cut(s) 124, 673
DpnI GATC 3 cut(s) 105, 119, 141
DpnII GATC 3 cut(s) 103, 117, 139
Eam1104I CTCTTC 2 cut(s) 34, 165
EarI CTCTTC 2 cut(s) 34, 165
Eco130I CCWWGG 1 cut(s) 107
Eco57I CTGAAG 1 cut(s) 345
Eco88I CYCGRG 1 cut(s) 432
EcoT14I CCWWGG 1 cut(s) 107
ErhI CCWWGG 1 cut(s) 107
FaeI CATG 2 cut(s) 131, 273
FatI CATG 2 cut(s) 127, 269
FauNDI CATATG 1 cut(s) 571
Fnu4HI GCNGC 3 cut(s) 234, 414, 464
FokI GGATG 2 cut(s) 54, 623
Fsp4HI GCNGC 3 cut(s) 234, 414, 464
FspBI CTAG 2 cut(s) 482, 555
GluI GCNGC 3 cut(s) 234, 414, 464
HaeIII GGCC 6 cut(s) 112, 212, 268, 442, 474, 510
HapII CCGG 2 cut(s) 488, 512
Hin1II CATG 2 cut(s) 131, 273
HindIII AAGCTT 1 cut(s) 667
HinfI GANTC 1 cut(s) 596
HpaII CCGG 2 cut(s) 488, 512
HphI GGTGA 1 cut(s) 545
Hpy188III TCNNGA 3 cut(s) 39, 164, 555
HpyAV CCTTC 3 cut(s) 165, 310, 320
HpyCH4III ACNGT 2 cut(s) 25, 251
HpyCH4V TGCA 5 cut(s) 233, 314, 413, 575, 665
HpyF10VI GCNNNNNNNGC 2 cut(s) 60, 336
Hsp92II CATG 2 cut(s) 131, 273
Kzo9I GATC 3 cut(s) 103, 117, 139
LmnI GCTCC 1 cut(s) 490
LpnPI CCDG 7 cut(s) 18, 24, 149, 336, 492, 501, 525
Lsp1109I GCAGC 3 cut(s) 245, 425, 450
MaeI CTAG 2 cut(s) 482, 555
MaeIII GTNAC 3 cut(s) 8, 254, 597
MalI GATC 3 cut(s) 105, 119, 141
MboI GATC 3 cut(s) 103, 117, 139
MboII GAAGA 5 cut(s) 21, 113, 134, 152, 644
MfeI CAATTG 1 cut(s) 381
MflI RGATCY 1 cut(s) 103
MluCI AATT 4 cut(s) 381, 446, 520, 660
MlyI GAGTC 1 cut(s) 605
MnlI CCTC 4 cut(s) 176, 395, 489, 666
MseI TTAA 2 cut(s) 179, 539
MspA1I CMGCKG 1 cut(s) 236
MspCI CTTAAG 1 cut(s) 178
MspI CCGG 2 cut(s) 488, 512
MspR9I CCNGG 1 cut(s) 512
MunI CAATTG 1 cut(s) 381
Mva1269I GAATGC 1 cut(s) 314
MwoI GCNNNNNNNGC 2 cut(s) 60, 336
NciI CCSGG 1 cut(s) 512
NdeI CATATG 1 cut(s) 571
NdeII GATC 3 cut(s) 103, 117, 139
NlaIII CATG 2 cut(s) 131, 273
NlaIV GGNNCC 1 cut(s) 267
NmuCI GTSAC 2 cut(s) 254, 597
PctI GAATGC 1 cut(s) 314
PflMI CCANNNNNTGG 1 cut(s) 449
PkrI GCNGC 3 cut(s) 235, 415, 465
PleI GAGTC 1 cut(s) 604
PpsI GAGTC 1 cut(s) 604
PspN4I GGNNCC 1 cut(s) 267
PspPI GGNCC 4 cut(s) 266, 440, 473, 509
PsuI RGATCY 1 cut(s) 103
PvuII CAGCTG 1 cut(s) 236
RsaI GTAC 2 cut(s) 125, 674
RsaNI GTAC 2 cut(s) 124, 673
SaqAI TTAA 2 cut(s) 179, 539
SatI GCNGC 3 cut(s) 234, 414, 464
Sau3AI GATC 3 cut(s) 103, 117, 139
Sau96I GGNCC 4 cut(s) 266, 440, 473, 509
SchI GAGTC 1 cut(s) 605
ScrFI CCNGG 1 cut(s) 512
SetI ASST 7 cut(s) 65, 157, 187, 238, 481, 487, 671
SfcI CTRYAG 1 cut(s) 331
SmlI CTYRAG 1 cut(s) 178
SmoI CTYRAG 1 cut(s) 178
Sse9I AATT 4 cut(s) 381, 446, 520, 660
SspMI CTAG 2 cut(s) 482, 555
StyD4I CCNGG 1 cut(s) 510
StyI CCWWGG 1 cut(s) 107
TaaI ACNGT 2 cut(s) 25, 251
TasI AATT 4 cut(s) 381, 446, 520, 660
TatI WGTACW 1 cut(s) 672
Tru1I TTAA 2 cut(s) 179, 539
Tru9I TTAA 2 cut(s) 179, 539
TscAI CASTG 2 cut(s) 28, 412
TseFI GTSAC 2 cut(s) 254, 597
TseI GCWGC 3 cut(s) 233, 413, 463
Tsp45I GTSAC 2 cut(s) 254, 597
TspDTI ATGAA 1 cut(s) 114
TspRI CASTG 2 cut(s) 28, 412
Van91I CCANNNNNTGG 1 cut(s) 449
Vha464I CTTAAG 1 cut(s) 178
XbaI TCTAGA 1 cut(s) 554
XspI CTAG 2 cut(s) 482, 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.