Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005486

Physical Location & Seq

Genomic Coordinates Forward (+)

11767485 .. 11770049

Gene Structure 2565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G32540.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGCATACTTGGAAAAATCAAATATTTTCAGATTCCCAATTTGTTTTACTCTTCATGGGAAAAAATTGCTCAATTATTTTCCCAGAACCACATTTATTTATTTCACATGTGTTCATAATCCATTTGAATGTACTTTTTTTGGTTAAAAAAATAAATAAAAACAACTTGAGATTTGTAGGAAGTACAAGTGGGCAGAGCCAGTTAGTGTGTTCAGGTTGCAGAAACCTTCTGATGTATCCCGTCGGAGCAACCTCCGTCTGTTGCGCCGTCTGTAACGCCGTCACGGCCGTTCCTCCGCCCGGAACGGAGATGGCACAGTTGGTATGTGGAGGATGTCATACACTCTTAATGTACATTCGTGGAGCTACAAGTGTTCAATGTTCTTGTTGTCACACTGTTAATCTCGCCCTCGAAGCAAACCAAGTAGCGCATGTGAATTGCGGAAACTGCATGATGCTACTAATGTATCAATATGGAGCAAGATCAGTGAAATGTGCCGTTTGTAACTTTGTCACATCTGTTGGGGGTTCAACGAGCACGACTGATTCGAAGTTTAACAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0002683 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009814 GO:0010363 GO:0010941 GO:0010942 GO:0019222 GO:0031323 GO:0031347 GO:0031348 GO:0031349 GO:0034051 GO:0034052 GO:0043067 GO:0043068 GO:0043069 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0045595 GO:0045824 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050776 GO:0050777 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0060548 GO:0065007 GO:0080134 GO:0080135 GO:0090322 GO:0097159 GO:0098542 GO:1900407 GO:1901031 GO:1901363 GO:1902882 GO:2000121 GO:2000377

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-LSD1

Protein Analysis

187

Amino Acids

20.29

Weight (kDa)

8.64

Isoelectric Point (pI)

34.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-LSD1	PF06943	37 - 61	7e-12	LSD1 zinc finger
zf-LSD1	PF06943	76 - 100	1.2e-12	LSD1 zinc finger
zf-LSD1	PF06943	114 - 138	1.2e-11	LSD1 zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32540 AT1G32540 AT1G32540 AT1G32540 AT1G32540 AT1G32540 AT1G32540
fragaria_vesca	FvH4_5g21750
malus_domestica	MD06G1032500.v1.1
prunus_persica	Prupe.5G039600_v2.0.a1 Prupe.5G039600_v2.0.a1 Prupe.5G039600_v2.0.a1 Prupe.5G039600_v2.0.a1 Prupe.5G039600_v2.0.a1
pyrus_communis	pycom06g02690
rosa_chinensis	RchiOBHm_Chr7g0209241
rosa_laevigata	RLG00000003154
rosa_multiflora	Rmu_sc0001701.1_g000013
rosa_roxburghii	Rroxscaffold_3G00249600
rosa_rugosa	Rorug07G0110400 Rorug07G0110500 Rorug07G0110500 Rorug07G0110600 Rorug07G0110700
rosa_samantha	Rh7AG244600 Rh7BG239900 Rh7CG260200 Rh7DG251500
rosa_wichuraiana	Rw7G020750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	296, 441
AcoI	YGGCCR	1 cut(s)	285
AfaI	GTAC	3 cut(s)	132, 184, 353
AfiI	CCNNNNNNNGG	1 cut(s)	299
AflIII	ACRYGT	1 cut(s)	106
AgsI	TTSAA	3 cut(s)	127, 377, 531
AluBI	AGCT	1 cut(s)	365
AluI	AGCT	1 cut(s)	365
Alw21I	GWGCWC	1 cut(s)	539
AoxI	GGCC	1 cut(s)	285
AspLEI	GCGC	2 cut(s)	266, 430
AsuC2I	CCSGG	1 cut(s)	300
AsuII	TTCGAA	1 cut(s)	548
BaeI	ACNNNNGTAYC	2 cut(s)	449, 482
Bbv12I	GWGCWC	1 cut(s)	539
BccI	CCATC	1 cut(s)	304
BceAI	ACGGC	5 cut(s)	251, 263, 272, 300, 482
BciVI	GTATCC	1 cut(s)	246
BcnI	CCSGG	1 cut(s)	300
BfuI	GTATCC	1 cut(s)	246
BglI	GCCNNNNNGGC	1 cut(s)	284
Bme1390I	CCNGG	1 cut(s)	300
BmrFI	CCNGG	1 cut(s)	300
BmsI	GCATC	1 cut(s)	444
Bpu14I	TTCGAA	1 cut(s)	548
BpuEI	CTTGAG	1 cut(s)	187
BpuMI	CCSGG	1 cut(s)	300
Bsc4I	CCNNNNNNNGG	1 cut(s)	299
Bse1I	ACTGG	1 cut(s)	199
BseGI	GGATG	1 cut(s)	338
BseLI	CCNNNNNNNGG	1 cut(s)	299
BseNI	ACTGG	1 cut(s)	199
BseX3I	CGGCCG	1 cut(s)	285
Bsh1285I	CGRYCG	1 cut(s)	288
BshFI	GGCC	1 cut(s)	287
BsiEI	CGRYCG	1 cut(s)	288
BsiHKAI	GWGCWC	1 cut(s)	539
BsiSI	CCGG	1 cut(s)	300
BslI	CCNNNNNNNGG	1 cut(s)	299
BsnI	GGCC	1 cut(s)	287
Bsp119I	TTCGAA	1 cut(s)	548
Bsp1286I	GDGCHC	1 cut(s)	539
Bsp1407I	TGTACA	1 cut(s)	351
Bsp143I	GATC	1 cut(s)	482
BspACI	CCGC	2 cut(s)	296, 441
BspANI	GGCC	1 cut(s)	287
BspT104I	TTCGAA	1 cut(s)	548
BsrGI	TGTACA	1 cut(s)	351
BsrI	ACTGG	1 cut(s)	199
BssMI	GATC	1 cut(s)	482
Bst4CI	ACNGT	2 cut(s)	318, 397
Bst6I	CTCTTC	1 cut(s)	56
BstAUI	TGTACA	1 cut(s)	351
BstBI	TTCGAA	1 cut(s)	548
BstF5I	GGATG	1 cut(s)	338
BstHHI	GCGC	2 cut(s)	266, 430
BstKTI	GATC	1 cut(s)	485
BstMBI	GATC	1 cut(s)	482
BstMCI	CGRYCG	1 cut(s)	288
BstMWI	GCNNNNNNNGC	3 cut(s)	284, 413, 447
BstNSI	RCATGY	2 cut(s)	110, 434
BstSCI	CCNGG	1 cut(s)	298
BstZI	CGGCCG	1 cut(s)	285
BsuI	GTATCC	1 cut(s)	246
BsuRI	GGCC	1 cut(s)	287
BtsCI	GGATG	1 cut(s)	338
BtsIMutI	CAGTG	2 cut(s)	393, 492
CfoI	GCGC	2 cut(s)	266, 430
Csp6I	GTAC	3 cut(s)	131, 183, 352
CviAII	CATG	4 cut(s)	55, 107, 431, 451
CviJI	RGCY	3 cut(s)	198, 287, 365
CviKI_1	RGCY	3 cut(s)	198, 287, 365
CviQI	GTAC	3 cut(s)	131, 183, 352
DpnI	GATC	1 cut(s)	484
DpnII	GATC	1 cut(s)	482
EaeI	YGGCCR	1 cut(s)	285
EagI	CGGCCG	1 cut(s)	285
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
EciI	GGCGGA	1 cut(s)	285
EclXI	CGGCCG	1 cut(s)	285
Eco52I	CGGCCG	1 cut(s)	285
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	4 cut(s)	58, 110, 434, 454
FaiI	YATR	9 cut(s)	6, 56, 108, 116, 325, 339, 432, 452, 474
FatI	CATG	4 cut(s)	54, 106, 430, 450
FokI	GGATG	1 cut(s)	345
GlaI	GCGC	2 cut(s)	265, 429
HaeIII	GGCC	1 cut(s)	287
HapII	CCGG	1 cut(s)	300
HhaI	GCGC	2 cut(s)	266, 430
Hin1II	CATG	4 cut(s)	58, 110, 434, 454
Hin6I	GCGC	2 cut(s)	264, 428
HinP1I	GCGC	2 cut(s)	264, 428
HinfI	GANTC	2 cut(s)	32, 545
HpaII	CCGG	1 cut(s)	300
Hpy188I	TCNGA	3 cut(s)	31, 231, 245
Hpy99I	CGWCG	1 cut(s)	245
HpyAV	CCTTC	1 cut(s)	236
HpyCH4III	ACNGT	2 cut(s)	318, 397
HpyCH4V	TGCA	3 cut(s)	4, 219, 450
HpyF10VI	GCNNNNNNNGC	3 cut(s)	284, 413, 447
Hsp92II	CATG	4 cut(s)	58, 110, 434, 454
HspAI	GCGC	2 cut(s)	264, 428
Kzo9I	GATC	1 cut(s)	482
LmnI	GCTCC	3 cut(s)	245, 362, 476
LpnPI	CCDG	4 cut(s)	96, 198, 212, 313
LweI	GCATC	1 cut(s)	444
MaeIII	GTNAC	5 cut(s)	272, 280, 389, 503, 511
MalI	GATC	1 cut(s)	484
MboI	GATC	1 cut(s)	482
MboII	GAAGA	1 cut(s)	43
MhlI	GDGCHC	1 cut(s)	539
MluCI	AATT	5 cut(s)	38, 64, 72, 436, 559
MmeI	TCCRAC	1 cut(s)	223
MnlI	CCTC	4 cut(s)	262, 303, 323, 419
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	5 cut(s)	144, 347, 399, 555, 562
MslI	CAYNNNNRTG	1 cut(s)	126
MspI	CCGG	1 cut(s)	300
MspR9I	CCNGG	1 cut(s)	300
MwoI	GCNNNNNNNGC	3 cut(s)	284, 413, 447
NciI	CCSGG	1 cut(s)	300
NdeII	GATC	1 cut(s)	482
NlaIII	CATG	4 cut(s)	58, 110, 434, 454
NmuCI	GTSAC	3 cut(s)	280, 389, 511
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	110, 434
NspV	TTCGAA	1 cut(s)	548
PciI	ACATGT	1 cut(s)	106
PcsI	WCGNNNNNNNCGW	1 cut(s)	545
PfeI	GAWTC	2 cut(s)	32, 545
PscI	ACATGT	1 cut(s)	106
RsaI	GTAC	3 cut(s)	132, 184, 353
RsaNI	GTAC	3 cut(s)	131, 183, 352
RseI	CAYNNNNRTG	1 cut(s)	126
SaqAI	TTAA	5 cut(s)	144, 347, 399, 555, 562
Sau3AI	GATC	1 cut(s)	482
ScrFI	CCNGG	1 cut(s)	300
SduI	GDGCHC	1 cut(s)	539
SetI	ASST	4 cut(s)	217, 228, 254, 367
SfaNI	GCATC	1 cut(s)	444
SfuI	TTCGAA	1 cut(s)	548
SmiMI	CAYNNNNRTG	1 cut(s)	126
SmlI	CTYRAG	1 cut(s)	166
SmoI	CTYRAG	1 cut(s)	166
Sse9I	AATT	5 cut(s)	38, 64, 72, 436, 559
SsiI	CCGC	2 cut(s)	296, 441
SspI	AATATT	1 cut(s)	24
StyD4I	CCNGG	1 cut(s)	298
TaaI	ACNGT	2 cut(s)	318, 397
TaqI	TCGA	2 cut(s)	411, 548
TasI	AATT	5 cut(s)	38, 64, 72, 436, 559
TatI	WGTACW	3 cut(s)	130, 182, 351
TfiI	GAWTC	2 cut(s)	32, 545
Tru1I	TTAA	5 cut(s)	144, 347, 399, 555, 562
Tru9I	TTAA	5 cut(s)	144, 347, 399, 555, 562
TscAI	CASTG	2 cut(s)	400, 492
TseFI	GTSAC	3 cut(s)	280, 389, 511
Tsp45I	GTSAC	3 cut(s)	280, 389, 511
TspDTI	ATGAA	2 cut(s)	43, 103
TspGWI	ACGGA	2 cut(s)	244, 320
TspRI	CASTG	2 cut(s)	400, 492
XceI	RCATGY	2 cut(s)	110, 434
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.