Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0005486

Physical Location & Seq

Genomic Coordinates Reverse (-)

4387242 .. 4389632

Gene Structure 2391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G039600.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGCCAGTTCCACTTGCCCCATATCCAACTCCTCCAGCACCATACACACCACCTGCAAATGGTGCACAGAGCCAACTTGTGTGCTCTGGATGTAGGAACCTTTTACTCTATCCTGTTGGAGCCACCTCTGTCTGCTGTGCGGTTTGTAATGCAGTCACTGCTGTGCCACCTCCTGGCACAGAAATGGCCCAGCTGGTTTGTGGAGGATGCCACACCCTACTCATGTATATCCGCGGAGCAACGAGTGTACAATGTTCTTGCTGCCACACTGTAAATCTAGCCTTGGAAGCAAATCAGGTGGCGCATGTCAATTGTGGGAACTGCAGGATGCTGTTAATGTATCAATATGGAGCAAGATCTGTGAAATGTGCGGTTTGCAATTTTGTCACATCAGTTGGGGTGTCGACAAGCACTCCCGAACAGAAATTCAACAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002683 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0010363 GO:0010941 GO:0031347 GO:0031348 GO:0034051 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045088 GO:0045595 GO:0045824 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050793 GO:0050794 GO:0060548 GO:0065007 GO:0080134 GO:0080135

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-LSD1

Protein Analysis

146

Amino Acids

15.16

Weight (kDa)

8.21

Isoelectric Point (pI)

40.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32540 AT1G32540 AT1G32540 AT1G32540 AT1G32540 AT1G32540 AT1G32540
fragaria_vesca	FvH4_5g21750
malus_domestica	MD06G1032500.v1.1
prunus_persica	Prupe.5G039600_v2.0.a1 Prupe.5G039600_v2.0.a1 Prupe.5G039600_v2.0.a1 Prupe.5G039600_v2.0.a1 Prupe.5G039600_v2.0.a1
pyrus_communis	pycom06g02690
rosa_chinensis	RchiOBHm_Chr7g0209241
rosa_laevigata	RLG00000003154
rosa_multiflora	Rmu_sc0001701.1_g000013
rosa_roxburghii	Rroxscaffold_3G00249600
rosa_rugosa	Rorug07G0110400 Rorug07G0110500 Rorug07G0110500 Rorug07G0110600 Rorug07G0110700
rosa_samantha	Rh7AG244600 Rh7BG239900 Rh7CG260200 Rh7DG251500
rosa_wichuraiana	Rw7G020750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	61
Acc36I	ACCTGC	1 cut(s)	61
AccB7I	CCANNNNNTGG	1 cut(s)	173
AccI	GTMKAC	1 cut(s)	404
AccII	CGCG	1 cut(s)	234
AciI	CCGC	4 cut(s)	140, 232, 234, 371
AcsI	RAATTY	1 cut(s)	425
AfaI	GTAC	1 cut(s)	249
AfiI	CCNNNNNNNGG	2 cut(s)	59, 173
AgsI	TTSAA	1 cut(s)	430
AjnI	CCWGG	1 cut(s)	172
AleI	CACNNNNGTG	1 cut(s)	161
AluBI	AGCT	1 cut(s)	193
AluI	AGCT	1 cut(s)	193
Alw21I	GWGCWC	2 cut(s)	67, 86
Alw44I	GTGCAC	1 cut(s)	63
AlwNI	CAGNNNCTG	1 cut(s)	158
AoxI	GGCC	1 cut(s)	186
ApaLI	GTGCAC	1 cut(s)	63
ApeKI	GCWGC	1 cut(s)	261
ApoI	RAATTY	1 cut(s)	425
AspLEI	GCGC	1 cut(s)	304
AspS9I	GGNCC	1 cut(s)	187
BaeGI	GKGCMC	1 cut(s)	67
Bbv12I	GWGCWC	2 cut(s)	67, 86
BbvI	GCAGC	1 cut(s)	248
BciT130I	CCWGG	1 cut(s)	174
BfaI	CTAG	1 cut(s)	278
BfmI	CTRYAG	1 cut(s)	322
BfuAI	ACCTGC	1 cut(s)	61
BglII	AGATCT	1 cut(s)	356
BisI	GCNGC	1 cut(s)	262
BlsI	GCNGC	1 cut(s)	263
Bme1390I	CCNGG	1 cut(s)	174
BmgT120I	GGNCC	1 cut(s)	187
BmiI	GGNNCC	2 cut(s)	98, 121
BmrFI	CCNGG	1 cut(s)	174
BmsI	GCATC	2 cut(s)	197, 318
BpmI	CTGGAG	1 cut(s)	18
BsaJI	CCNNGG	2 cut(s)	232, 282
BsaXI	ACNNNNNCTCC	2 cut(s)	397, 427
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 173
Bse1I	ACTGG	1 cut(s)	5
BseBI	CCWGG	1 cut(s)	174
BseDI	CCNNGG	2 cut(s)	232, 282
BseGI	GGATG	3 cut(s)	95, 212, 333
BseLI	CCNNNNNNNGG	2 cut(s)	59, 173
BseNI	ACTGG	1 cut(s)	5
BseRI	GAGGAG	1 cut(s)	21
BseSI	GKGCMC	1 cut(s)	67
BseXI	GCAGC	1 cut(s)	248
BseYI	CCCAGC	1 cut(s)	189
Bsh1236I	CGCG	1 cut(s)	234
BshFI	GGCC	1 cut(s)	188
BsiHKAI	GWGCWC	2 cut(s)	67, 86
BslI	CCNNNNNNNGG	2 cut(s)	59, 173
BsnI	GGCC	1 cut(s)	188
Bsp1286I	GDGCHC	2 cut(s)	67, 86
Bsp1407I	TGTACA	1 cut(s)	247
Bsp143I	GATC	1 cut(s)	356
BspACI	CCGC	4 cut(s)	140, 232, 234, 371
BspANI	GGCC	1 cut(s)	188
BspFNI	CGCG	1 cut(s)	234
BspLI	GGNNCC	2 cut(s)	98, 121
BspMAI	CTGCAG	1 cut(s)	326
BspMI	ACCTGC	1 cut(s)	61
BsrGI	TGTACA	1 cut(s)	247
BsrI	ACTGG	1 cut(s)	5
BssECI	CCNNGG	2 cut(s)	232, 282
BssMI	GATC	1 cut(s)	356
BssT1I	CCWWGG	1 cut(s)	282
Bst2UI	CCWGG	1 cut(s)	174
Bst4CI	ACNGT	1 cut(s)	271
BstAPI	GCANNNNNTGC	2 cut(s)	62, 158
BstAUI	TGTACA	1 cut(s)	247
BstDSI	CCRYGG	1 cut(s)	232
BstF5I	GGATG	3 cut(s)	95, 212, 333
BstFNI	CGCG	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	304
BstKTI	GATC	1 cut(s)	359
BstMBI	GATC	1 cut(s)	356
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 158, 287
BstNI	CCWGG	1 cut(s)	174
BstNSI	RCATGY	1 cut(s)	308
BstSCI	CCNGG	1 cut(s)	172
BstSFI	CTRYAG	1 cut(s)	322
BstSLI	GKGCMC	1 cut(s)	67
BstUI	CGCG	1 cut(s)	234
BstV1I	GCAGC	1 cut(s)	248
BstX2I	RGATCY	1 cut(s)	356
BstYI	RGATCY	1 cut(s)	356
BsuRI	GGCC	1 cut(s)	188
BtgI	CCRYGG	1 cut(s)	232
BtsCI	GGATG	3 cut(s)	95, 212, 333
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	2 cut(s)	156, 267
BveI	ACCTGC	1 cut(s)	61
CaiI	CAGNNNCTG	1 cut(s)	158
CfoI	GCGC	1 cut(s)	304
Cfr13I	GGNCC	1 cut(s)	187
Cfr42I	CCGCGG	1 cut(s)	235
Csp6I	GTAC	1 cut(s)	248
CspCI	CAANNNNNGTGG	2 cut(s)	279, 314
CviAII	CATG	2 cut(s)	223, 305
CviJI	RGCY	5 cut(s)	72, 122, 188, 193, 281
CviKI_1	RGCY	5 cut(s)	72, 122, 188, 193, 281
CviQI	GTAC	1 cut(s)	248
DpnI	GATC	1 cut(s)	358
DpnII	GATC	1 cut(s)	356
Eco130I	CCWWGG	1 cut(s)	282
EcoRII	CCWGG	1 cut(s)	172
EcoT14I	CCWWGG	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	2 cut(s)	226, 308
FaiI	YATR	6 cut(s)	22, 43, 224, 228, 306, 348
FatI	CATG	2 cut(s)	222, 304
FblI	GTMKAC	1 cut(s)	404
Fnu4HI	GCNGC	1 cut(s)	262
FokI	GGATG	3 cut(s)	102, 219, 340
Fsp4HI	GCNGC	1 cut(s)	262
FspBI	CTAG	1 cut(s)	278
GlaI	GCGC	1 cut(s)	303
GluI	GCNGC	1 cut(s)	262
GsaI	CCCAGC	1 cut(s)	193
GsuI	CTGGAG	1 cut(s)	18
HaeIII	GGCC	1 cut(s)	188
HhaI	GCGC	1 cut(s)	304
Hin1II	CATG	2 cut(s)	226, 308
Hin6I	GCGC	1 cut(s)	302
HinP1I	GCGC	1 cut(s)	302
HincII	GTYRAC	1 cut(s)	405
HindII	GTYRAC	1 cut(s)	405
Hpy166II	GTNNAC	3 cut(s)	65, 248, 405
Hpy188III	TCNNGA	2 cut(s)	87, 416
Hpy8I	GTNNAC	3 cut(s)	65, 248, 405
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4V	TGCA	5 cut(s)	56, 65, 152, 324, 378
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 158, 287
Hsp92II	CATG	2 cut(s)	226, 308
HspAI	GCGC	1 cut(s)	302
KspI	CCGCGG	1 cut(s)	235
Kzo9I	GATC	1 cut(s)	356
LmnI	GCTCC	3 cut(s)	119, 236, 350
Lsp1109I	GCAGC	1 cut(s)	248
LweI	GCATC	2 cut(s)	197, 318
MaeI	CTAG	1 cut(s)	278
MaeIII	GTNAC	2 cut(s)	154, 385
MalI	GATC	1 cut(s)	358
MboI	GATC	1 cut(s)	356
MfeI	CAATTG	1 cut(s)	310
MflI	RGATCY	1 cut(s)	356
MhlI	GDGCHC	2 cut(s)	67, 86
MluCI	AATT	3 cut(s)	310, 379, 425
MmeI	TCCRAC	2 cut(s)	50, 97
MnlI	CCTC	4 cut(s)	42, 136, 180, 197
MseI	TTAA	1 cut(s)	335
MslI	CAYNNNNRTG	2 cut(s)	161, 182
MspA1I	CMGCKG	2 cut(s)	193, 234
MspR9I	CCNGG	1 cut(s)	174
MunI	CAATTG	1 cut(s)	310
MvaI	CCWGG	1 cut(s)	174
MvnI	CGCG	1 cut(s)	234
MwoI	GCNNNNNNNGC	3 cut(s)	62, 158, 287
NdeII	GATC	1 cut(s)	356
NlaIII	CATG	2 cut(s)	226, 308
NlaIV	GGNNCC	2 cut(s)	98, 121
NmuCI	GTSAC	2 cut(s)	154, 385
NspI	RCATGY	1 cut(s)	308
OliI	CACNNNNGTG	1 cut(s)	161
PaqCI	CACCTGC	1 cut(s)	61
PflMI	CCANNNNNTGG	1 cut(s)	173
PkrI	GCNGC	1 cut(s)	263
Psp6I	CCWGG	1 cut(s)	172
PspFI	CCCAGC	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	172
PspN4I	GGNNCC	2 cut(s)	98, 121
PspPI	GGNCC	1 cut(s)	187
PstI	CTGCAG	1 cut(s)	326
PstNI	CAGNNNCTG	1 cut(s)	158
PsuI	RGATCY	1 cut(s)	356
PvuII	CAGCTG	1 cut(s)	193
RsaI	GTAC	1 cut(s)	249
RsaNI	GTAC	1 cut(s)	248
RseI	CAYNNNNRTG	2 cut(s)	161, 182
SacII	CCGCGG	1 cut(s)	235
SalI	GTCGAC	1 cut(s)	403
SaqAI	TTAA	1 cut(s)	335
SatI	GCNGC	1 cut(s)	262
Sau3AI	GATC	1 cut(s)	356
Sau96I	GGNCC	1 cut(s)	187
ScrFI	CCNGG	1 cut(s)	174
SduI	GDGCHC	2 cut(s)	67, 86
SetI	ASST	6 cut(s)	55, 102, 128, 172, 195, 300
SfaNI	GCATC	2 cut(s)	197, 318
SfcI	CTRYAG	1 cut(s)	322
Sfr303I	CCGCGG	1 cut(s)	235
SgrBI	CCGCGG	1 cut(s)	235
SmiMI	CAYNNNNRTG	2 cut(s)	161, 182
Sse9I	AATT	3 cut(s)	310, 379, 425
SsiI	CCGC	4 cut(s)	140, 232, 234, 371
SspMI	CTAG	1 cut(s)	278
StyD4I	CCNGG	1 cut(s)	172
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	1 cut(s)	271
TaqI	TCGA	1 cut(s)	404
TasI	AATT	3 cut(s)	310, 379, 425
TatI	WGTACW	1 cut(s)	247
Tru1I	TTAA	1 cut(s)	335
Tru9I	TTAA	1 cut(s)	335
TscAI	CASTG	2 cut(s)	163, 274
TseFI	GTSAC	2 cut(s)	154, 385
TseI	GCWGC	1 cut(s)	261
Tsp45I	GTSAC	2 cut(s)	154, 385
TspRI	CASTG	2 cut(s)	163, 274
Van91I	CCANNNNNTGG	1 cut(s)	173
VneI	GTGCAC	1 cut(s)	63
XapI	RAATTY	1 cut(s)	425
XceI	RCATGY	1 cut(s)	308
XcmI	CCANNNNNNNNNTGG	1 cut(s)	197
XmiI	GTMKAC	1 cut(s)	404
XspI	CTAG	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.