Rorug07G0110400

Plant intracellular Ras-group-related LRR protein 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000325
Physical Location & Seq
Reverse (-)
8608076 .. 8613759
5684 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0110400.1

Sequence Viewer

Length: 2421 bp
ATGCTTGAAGAAGATTCGTCAAGTTCAACTACTCATCGCTGCCACAAAATCATTAATGATATCCAAAGCTTCCTTCCCACCTCTCGGCCCCGTGTTTCTGATTATCTGGAACAGATAATACAGGGGATAGAACAGATCATCAACAAGGGCTATGGCTACCTGGCTGATGGAGATGCGTTCTTTGCCGTCTATGCTGATCAAAAGTTGGAATATGCTACAGATGGTGCACAAATTTCTCTCAAGCTAATAAAGCACCATCCAGCAGATTTTCTGTTGTGGAAGTCTGCGAAGGCTGGTGAGCCAAATTGGTACAGCCCTTGGGGACCTGGGAGACCAGGGTGGCCAATTGCATGCAGTGCAATGACTCCTCATCTGCCGTTCGAGTTTGATATCCATGCTGGCAGCAGTGACTTGATTTGTCCAAATCAAACTGAAATTTCTGCTCCGAGTAGTGCTGACCAGAATGGGCTTGTCACTATTGATAACAAGAGAATGTCAGAATCAAGTCTCACAACTCGTTGGATTACTCAATACTATCATCCCCTGGCAGTAAGATACTTCCTGTTAAGTGCACGCTTCACGTCTTCTATCAAGTTTACTGTCTCTCATCTGGAGAGCGCATCAACTGCCATGTATTCCATATATGAGACTCTGCAAGACTGTGAAGATGCTTTATCTTCTCTGACTGGAGGAGCAGAGGAAAGCAGTACAGCAGTTACAATTACTACAGCCCAAAACGACAGCATTGAGCTAAAGAAGCAGTTTGAGACTCAAATGACTGATGATTTGGACATATCCCACATAATGAAGGATGCTTATGCTTTTCAAGGTGCTCTTGATCTTCTAAAGAAAACCTTAAATGTGCTCAAGGAGCAGCAGCCAGCATCATTTCATTGTTTACTTGAAACAGTGAAAGAAGTTAAAGCAGTCCTGGACATTCTCTGTTTGCTGCCCTCCCTTCCATACTCTCAGGTTTTGCAGCAACTAAAAGATACGACACTGAAGAGAGAACAGCTTTCAAAAGATGGTGCTGTAAGCAGGAAATTAGATAGAGCAGACCTGGAAGAGTGTAATACAAACTGTACTTCTTCTGTGGATGTGAGGAAAGGAGGAAAGCTGGATTTGAGCTGCACATCTAATGTCGGAAAGGAAATAGTACCGTCGAACCTTTCTGATATACCAGAGTGGATCCTAGTTGATATTCTGTCACTCCTCTCAGTCAAGGATGCGGCATTAATCAGTTTCACCTGCAAAGCATGGGAAAATTTGTGGACCTATTCTACAAATCTGACTTTTGTTAACTGCAAATGCCCCTTTGCATACCTTGACATTGGACTGAAGATTAGAGAGAGGGAAAAGTATGTTGGTTGGGTCAGAGATGTTCTAAAGAAGTATAGAGGGACGAAGCTTGATAAGTTCCATATCTTCTTCGATTTGGACAGCAGCTATAAAAGCGACATTGATAATTGGGTAGAGTTTGCTCTCGAACACGATGTTAAAGCGTTGATCTTGGAAATGGTCAGCCCTTTTGATCCTTCTCGTAATAACTATTCATTTACTAAGCGGATTACGGGCGAGTCCCTCCAAGTATTGGTGCTTGAAAATGTTGATCTGGATGGAGAGGTTTTTCAGTATATATCTCATTTTCGAGGACTTGAACAACTATCAGTGACTGGTGCATCTGGTTTAAATCGCATCAGAGTGTTTGGTTCTTCAGTACGTCTGAAGTCCTTAGTGGTCAGAAATTGTTGGAATCTTGAGATTATTGAGATCTGTGATTTACCTCAGCTTGCTTTCTTTGAGTTTGAGGGAAGACCTATATGCCTGGACCTGAACTCAGTTCCAAATCTAGTGAACGTGTCCCTTGGCGAGGATGACCTGGAATTCTTAAAAGTTGCCTTCAAGCAGCTTGCTTGCTGTCTCTGTCAGCTAAGAACTCTTACTCTGGATAACACACTTAGTTTTCTGACACAAGAGAATGTTGTCTTTCCTATTCCTCAGTTACCAGAGCTTGTGTGCTTGGAGTTGCGAATCTCACCAGATGATGCATTTGTGCTGTTGCAATTGGCGTGTTTTTTGGATGCATCTCCTCGCTTGCAGAAGTTAGTTTTAAAGTTTGACTTTCTAGGGTCGGGGATAAATTTGTTGAAAGCTGAGAGCCATCCGCACAACAACTTAAAGGTGGTTGAGGTTATTGGATTCTTTGATTGCCCAGCAGCGACTGATATTGTCACATTCATAGTGGACAATGCTGCTGGGCTAGAAAGTCTGGTGATCGATCCTGTTGTCCCATGGTGTGAGCATCGTAGAGGAAGGAAGCCTGATGAGTTAATTGAGAAGGAGCGAAAAGGGAGGCAGCACGCAATGTCGCTTAGAAGTATGCTGCCAGGCATGGACGGTGGAAACTCTTCTAGTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000122 GO:0000578 GO:0000902 GO:0001654 GO:0001655 GO:0001700 GO:0001708 GO:0001736 GO:0001737 GO:0001738 GO:0001745 GO:0001751 GO:0001752 GO:0001754 GO:0002009 GO:0002064 GO:0002065 GO:0002066 GO:0002164 GO:0002165 GO:0002168 GO:0003002 GO:0003006 GO:0003008 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0005918 GO:0005923 GO:0005938 GO:0006355 GO:0006357 GO:0007028 GO:0007043 GO:0007154 GO:0007163 GO:0007164 GO:0007165 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007308 GO:0007309 GO:0007314 GO:0007315 GO:0007318 GO:0007350 GO:0007351 GO:0007389 GO:0007391 GO:0007399 GO:0007423 GO:0007444 GO:0007464 GO:0007472 GO:0007476 GO:0007552 GO:0007560 GO:0007610 GO:0007611 GO:0007613 GO:0007635 GO:0008104 GO:0008150 GO:0008283 GO:0008285 GO:0008358 GO:0008544 GO:0008593 GO:0008595 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009790 GO:0009791 GO:0009792 GO:0009798 GO:0009880 GO:0009886 GO:0009887 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009913 GO:0009948 GO:0009952 GO:0009966 GO:0009987 GO:0009994 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0016020 GO:0016043 GO:0016323 GO:0016327 GO:0016328 GO:0016331 GO:0016332 GO:0016333 GO:0016334 GO:0016335 GO:0016336 GO:0019219 GO:0019222 GO:0019953 GO:0019991 GO:0021700 GO:0022008 GO:0022412 GO:0022414 GO:0022607 GO:0023051 GO:0023052 GO:0030010 GO:0030011 GO:0030030 GO:0030054 GO:0030100 GO:0030154 GO:0030182 GO:0030707 GO:0030714 GO:0030855 GO:0030859 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031594 GO:0032501 GO:0032502 GO:0032504 GO:0032879 GO:0032989 GO:0033036 GO:0034329 GO:0034330 GO:0034332 GO:0034333 GO:0035088 GO:0035089 GO:0035090 GO:0035107 GO:0035114 GO:0035120 GO:0035220 GO:0035239 GO:0035282 GO:0035295 GO:0035315 GO:0035316 GO:0035317 GO:0040008 GO:0042048 GO:0042058 GO:0042067 GO:0042127 GO:0042221 GO:0042706 GO:0043296 GO:0043297 GO:0044085 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0044703 GO:0045165 GO:0045169 GO:0045175 GO:0045178 GO:0045186 GO:0045197 GO:0045198 GO:0045199 GO:0045202 GO:0045216 GO:0045570 GO:0045571 GO:0045892 GO:0045926 GO:0045934 GO:0046425 GO:0046530 GO:0046552 GO:0046620 GO:0046621 GO:0048056 GO:0048468 GO:0048469 GO:0048477 GO:0048513 GO:0048519 GO:0048523 GO:0048563 GO:0048569 GO:0048583 GO:0048592 GO:0048598 GO:0048599 GO:0048609 GO:0048638 GO:0048640 GO:0048663 GO:0048699 GO:0048707 GO:0048729 GO:0048731 GO:0048736 GO:0048737 GO:0048749 GO:0048856 GO:0048863 GO:0048869 GO:0050678 GO:0050680 GO:0050789 GO:0050793 GO:0050794 GO:0050803 GO:0050877 GO:0050890 GO:0050896 GO:0051049 GO:0051093 GO:0051128 GO:0051171 GO:0051172 GO:0051179 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051704 GO:0051716 GO:0051726 GO:0060255 GO:0060429 GO:0060562 GO:0060581 GO:0060627 GO:0061162 GO:0061245 GO:0061326 GO:0061339 GO:0065007 GO:0065008 GO:0070160 GO:0071840 GO:0071944 GO:0072001 GO:0072002 GO:0072089 GO:0080090 GO:0090162 GO:0090596 GO:0097574 GO:0098590 GO:0099568 GO:0120036 GO:1901184 GO:1902531 GO:1902679 GO:1903506 GO:1903507 GO:1904892 GO:1990794 GO:2000026 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 LRR_8

Protein Analysis

806

Amino Acids

90.43

Weight (kDa)

5.13

Isoelectric Point (pI)

43.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1e PF01406 13 - 207 7.5e-37 tRNA synthetases class I (C) catalytic domain
LRR_At1g61320_AtMIF1 PF23622 526 - 763 2.8e-20 At1g61320/AtMIF1, LRR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1256
Acc36I ACCTGC 1 cut(s) 1256
AccB7I CCANNNNNTGG 1 cut(s) 1591
AciI CCGC 3 cut(s) 1229, 1564, 2165
AclWI GGATC 4 cut(s) 1183, 1196, 1526, 2273
AcoI YGGCCR 1 cut(s) 341
AcsI RAATTY 5 cut(s) 231, 435, 1264, 1883, 2140
AcuI CTGAAG 4 cut(s) 1022, 1358, 1698, 1745
AfaI GTAC 5 cut(s) 311, 709, 1084, 1158, 1719
AfiI CCNNNNNNNGG 3 cut(s) 84, 1591, 1870
AflIII ACRYGT 1 cut(s) 1857
AgsI TTSAA 9 cut(s) 8, 27, 827, 905, 1020, 1601, 1658, 1903, 2149
AjiI CACGTC 1 cut(s) 582
AjnI CCWGG 9 cut(s) 159, 325, 334, 543, 930, 1059, 1824, 1878, 2386
AjuI GAANNNNNNNTTGG 4 cut(s) 57, 89, 1347, 1379
Alw21I GWGCWC 4 cut(s) 229, 574, 835, 867
Alw26I GTCTC 6 cut(s) 325, 512, 607, 641, 761, 1925
Alw44I GTGCAC 2 cut(s) 225, 570
AlwI GGATC 4 cut(s) 1183, 1196, 1526, 2273
AlwNI CAGNNNCTG 2 cut(s) 1673, 2222
AoxI GGCC 2 cut(s) 86, 341
ApaLI GTGCAC 2 cut(s) 225, 570
ApoI RAATTY 5 cut(s) 231, 435, 1264, 1883, 2140
ArsI GACNNNNNNTTYG 2 cut(s) 769, 801
AseI ATTAAT 2 cut(s) 54, 1235
Asp700I GAANNNNTTC 1 cut(s) 2407
AspLEI GCGC 1 cut(s) 620
AspS9I GGNCC 4 cut(s) 87, 323, 1272, 1828
AsuHPI GGTGA 4 cut(s) 308, 1237, 2028, 2284
AvaII GGWCC 3 cut(s) 323, 1272, 1828
BaeGI GKGCMC 2 cut(s) 229, 574
BalI TGGCCA 1 cut(s) 343
BamHI GGATCC 1 cut(s) 1188
BbsI GAAGAC 2 cut(s) 576, 1819
Bbv12I GWGCWC 4 cut(s) 229, 574, 835, 867
BbvCI CCTCAGC 1 cut(s) 1785
BccI CCATC 6 cut(s) 161, 215, 264, 1019, 1610, 2169
BceAI ACGGC 2 cut(s) 170, 361
BciT130I CCWGG 9 cut(s) 161, 327, 336, 545, 932, 1061, 1826, 1880, 2388
BclI TGATCA 1 cut(s) 196
BcoDI GTCTC 6 cut(s) 325, 512, 607, 641, 761, 1925
BfaI CTAG 5 cut(s) 1193, 1850, 2126, 2261, 2412
BfmI CTRYAG 2 cut(s) 216, 726
BfuAI ACCTGC 1 cut(s) 1256
BglII AGATCT 1 cut(s) 1770
Bme1390I CCNGG 9 cut(s) 161, 327, 336, 545, 932, 1061, 1826, 1880, 2388
Bme18I GGWCC 3 cut(s) 323, 1272, 1828
BmgBI CACGTC 1 cut(s) 582
BmgT120I GGNCC 4 cut(s) 87, 323, 1272, 1828
BmiI GGNNCC 3 cut(s) 89, 324, 1190
BmrFI CCNGG 9 cut(s) 161, 327, 336, 545, 932, 1061, 1826, 1880, 2388
BpiI GAAGAC 2 cut(s) 576, 1819
BpmI CTGGAG 2 cut(s) 632, 708
Bpu10I CCTNAGC 1 cut(s) 1785
BpuEI CTTGAG 3 cut(s) 224, 851, 1778
Bsa29I ATCGAT 1 cut(s) 2277
BsaI GGTCTC 1 cut(s) 325
BsaJI CCNNGG 6 cut(s) 317, 326, 335, 543, 1864, 2291
Bsc4I CCNNNNNNNGG 3 cut(s) 84, 1591, 1870
Bse1I ACTGG 2 cut(s) 691, 1678
Bse3DI GCAATG 2 cut(s) 366, 2370
BseBI CCWGG 9 cut(s) 161, 327, 336, 545, 932, 1061, 1826, 1880, 2388
BseCI ATCGAT 1 cut(s) 2277
BseDI CCNNGG 6 cut(s) 317, 326, 335, 543, 1864, 2291
BseGI GGATG 9 cut(s) 256, 538, 817, 1102, 1231, 1621, 1879, 2086, 2161
BseLI CCNNNNNNNGG 3 cut(s) 84, 1591, 1870
BseMI GCAATG 2 cut(s) 366, 2370
BseMII CTCAG 6 cut(s) 983, 1230, 1799, 1851, 2012, 2145
BseNI ACTGG 2 cut(s) 691, 1678
BseRI GAGGAG 4 cut(s) 357, 705, 1202, 2079
BseSI GKGCMC 2 cut(s) 229, 574
BseYI CCCAGC 2 cut(s) 2212, 2255
BsgI GTGCAG 1 cut(s) 1114
BshFI GGCC 2 cut(s) 88, 343
BshVI ATCGAT 1 cut(s) 2277
BsiHKAI GWGCWC 4 cut(s) 229, 574, 835, 867
BslFI GGGAC 5 cut(s) 336, 1414, 1564, 1846, 2273
BslI CCNNNNNNNGG 3 cut(s) 84, 1591, 1870
BsmAI GTCTC 6 cut(s) 325, 512, 607, 641, 761, 1925
BsmFI GGGAC 5 cut(s) 336, 1414, 1564, 1846, 2273
BsnI GGCC 2 cut(s) 88, 343
Bso31I GGTCTC 1 cut(s) 325
Bsp1286I GDGCHC 4 cut(s) 229, 574, 835, 867
Bsp19I CCATGG 1 cut(s) 2291
BspACI CCGC 3 cut(s) 1229, 1564, 2165
BspANI GGCC 2 cut(s) 88, 343
BspCNI CTCAG 6 cut(s) 982, 1229, 1798, 1850, 2011, 2146
BspDI ATCGAT 1 cut(s) 2277
BspLI GGNNCC 3 cut(s) 89, 324, 1190
BspMI ACCTGC 1 cut(s) 1256
BspPI GGATC 4 cut(s) 1183, 1196, 1526, 2273
BspTNI GGTCTC 1 cut(s) 325
BsrDI GCAATG 2 cut(s) 366, 2370
BsrI ACTGG 2 cut(s) 691, 1678
BssECI CCNNGG 6 cut(s) 317, 326, 335, 543, 1864, 2291
BssT1I CCWWGG 3 cut(s) 317, 1864, 2291
Bst2UI CCWGG 9 cut(s) 161, 327, 336, 545, 932, 1061, 1826, 1880, 2388
Bst4CI ACNGT 6 cut(s) 601, 662, 910, 1082, 1161, 2399
Bst6I CTCTTC 3 cut(s) 998, 1059, 2413
BstAPI GCANNNNNTGC 2 cut(s) 356, 626
BstC8I GCNNGC 9 cut(s) 352, 400, 574, 882, 1791, 1911, 1915, 2096, 2361
BstDSI CCRYGG 1 cut(s) 2291
BstENI CCTNNNNNAGG 1 cut(s) 1868
BstF5I GGATG 9 cut(s) 256, 538, 817, 1102, 1231, 1621, 1879, 2086, 2161
BstHHI GCGC 1 cut(s) 620
BstMAI GTCTC 6 cut(s) 325, 512, 607, 641, 761, 1925
BstMWI GCNNNNNNNGC 8 cut(s) 182, 191, 250, 356, 626, 757, 871, 1452
BstNI CCWGG 9 cut(s) 161, 327, 336, 545, 932, 1061, 1826, 1880, 2388
BstNSI RCATGY 1 cut(s) 354
BstSCI CCNGG 9 cut(s) 159, 325, 334, 543, 930, 1059, 1824, 1878, 2386
BstSFI CTRYAG 2 cut(s) 216, 726
BstSLI GKGCMC 2 cut(s) 229, 574
BstV2I GAAGAC 2 cut(s) 576, 1819
BstX2I RGATCY 2 cut(s) 1188, 1770
BstYI RGATCY 2 cut(s) 1188, 1770
Bsu15I ATCGAT 1 cut(s) 2277
BsuRI GGCC 2 cut(s) 88, 343
BsuTUI ATCGAT 1 cut(s) 2277
BtgI CCRYGG 1 cut(s) 2291
BtgZI GCGATG 1 cut(s) 20
BtrI CACGTC 1 cut(s) 582
BtsCI GGATG 9 cut(s) 256, 538, 817, 1102, 1231, 1621, 1879, 2086, 2161
BtsI GCAGTG 2 cut(s) 361, 412
BtsIMutI CAGTG 5 cut(s) 361, 412, 915, 998, 1674
BveI ACCTGC 1 cut(s) 1256
Cac8I GCNNGC 9 cut(s) 352, 400, 574, 882, 1791, 1911, 1915, 2096, 2361
CaiI CAGNNNCTG 2 cut(s) 1673, 2222
CfoI GCGC 1 cut(s) 620
Cfr13I GGNCC 4 cut(s) 87, 323, 1272, 1828
ClaI ATCGAT 1 cut(s) 2277
Csp6I GTAC 5 cut(s) 310, 708, 1083, 1157, 1718
CviAII CATG 6 cut(s) 351, 395, 631, 1257, 2292, 2392
CviQI GTAC 5 cut(s) 310, 708, 1083, 1157, 1718
DraI TTTAAA 2 cut(s) 1689, 2112
EaeI YGGCCR 1 cut(s) 341
Eam1104I CTCTTC 3 cut(s) 998, 1059, 2413
EarI CTCTTC 3 cut(s) 998, 1059, 2413
Eco130I CCWWGG 3 cut(s) 317, 1864, 2291
Eco31I GGTCTC 1 cut(s) 325
Eco32I GATATC 2 cut(s) 61, 391
Eco47I GGWCC 3 cut(s) 323, 1272, 1828
Eco57I CTGAAG 4 cut(s) 1022, 1358, 1698, 1745
EcoNI CCTNNNNNAGG 1 cut(s) 1868
EcoO109I RGGNCCY 1 cut(s) 323
EcoRI GAATTC 1 cut(s) 1883
EcoRII CCWGG 9 cut(s) 159, 325, 334, 543, 930, 1059, 1824, 1878, 2386
EcoRV GATATC 2 cut(s) 61, 391
EcoT14I CCWWGG 3 cut(s) 317, 1864, 2291
EcoT22I ATGCAT 2 cut(s) 2050, 2086
ErhI CCWWGG 3 cut(s) 317, 1864, 2291
FaeI CATG 6 cut(s) 354, 398, 634, 1260, 2295, 2395
FalI AAGNNNNNCTT 6 cut(s) 819, 851, 839, 871, 2105, 2137
FaqI GGGAC 5 cut(s) 336, 1414, 1564, 1846, 2273
FatI CATG 6 cut(s) 350, 394, 630, 1256, 2291, 2391
FbaI TGATCA 1 cut(s) 196
FokI GGATG 9 cut(s) 243, 525, 824, 1109, 1238, 1628, 1886, 2093, 2148
FspBI CTAG 5 cut(s) 1193, 1850, 2126, 2261, 2412
GlaI GCGC 1 cut(s) 619
GsaI CCCAGC 2 cut(s) 2216, 2259
GsuI CTGGAG 2 cut(s) 632, 708
HaeIII GGCC 2 cut(s) 88, 343
HhaI GCGC 1 cut(s) 620
Hin1II CATG 6 cut(s) 354, 398, 634, 1260, 2295, 2395
Hin6I GCGC 1 cut(s) 618
HinP1I GCGC 1 cut(s) 618
HincII GTYRAC 1 cut(s) 1300
HindII GTYRAC 1 cut(s) 1300
HindIII AAGCTT 2 cut(s) 67, 1406
HinfI GANTC 9 cut(s) 14, 364, 500, 649, 769, 1577, 1753, 2031, 2199
HpaI GTTAAC 1 cut(s) 1300
HphI GGTGA 4 cut(s) 308, 1237, 2028, 2284
Hpy166II GTNNAC 8 cut(s) 227, 572, 597, 899, 1272, 1300, 1855, 2245
Hpy188III TCNNGA 7 cut(s) 107, 611, 836, 1484, 1613, 1757, 1946
Hpy8I GTNNAC 8 cut(s) 227, 572, 597, 899, 1272, 1300, 1855, 2245
Hpy99I CGWCG 1 cut(s) 1165
HpyAV CCTTC 8 cut(s) 83, 283, 802, 968, 1545, 1909, 2307, 2332
HpyCH4III ACNGT 6 cut(s) 601, 662, 910, 1082, 1161, 2399
HpyCH4IV ACGT 3 cut(s) 581, 1720, 1857
HpyF10VI GCNNNNNNNGC 8 cut(s) 182, 191, 250, 356, 626, 757, 871, 1452
HpySE526I ACGT 3 cut(s) 581, 1720, 1857
Hsp92II CATG 6 cut(s) 354, 398, 634, 1260, 2295, 2395
HspAI GCGC 1 cut(s) 618
Ksp22I TGATCA 1 cut(s) 196
KspAI GTTAAC 1 cut(s) 1300
LmnI GCTCC 4 cut(s) 448, 692, 871, 2341
MaeI CTAG 5 cut(s) 1193, 1850, 2126, 2261, 2412
MaeII ACGT 3 cut(s) 581, 1720, 1857
MaeIII GTNAC 7 cut(s) 407, 472, 715, 1206, 1669, 2001, 2230
MfeI CAATTG 2 cut(s) 345, 2063
MflI RGATCY 2 cut(s) 1188, 1770
MhlI GDGCHC 4 cut(s) 229, 574, 835, 867
MlsI TGGCCA 1 cut(s) 343
MluNI TGGCCA 1 cut(s) 343
MlyI GAGTC 4 cut(s) 358, 643, 763, 1586
MmeI TCCRAC 4 cut(s) 186, 500, 1123, 1730
Mox20I TGGCCA 1 cut(s) 343
Mph1103I ATGCAT 2 cut(s) 2050, 2086
MroXI GAANNNNTTC 1 cut(s) 2407
MscI TGGCCA 1 cut(s) 343
MslI CAYNNNNRTG 1 cut(s) 1700
Msp20I TGGCCA 1 cut(s) 343
MspR9I CCNGG 9 cut(s) 161, 327, 336, 545, 932, 1061, 1826, 1880, 2388
MunI CAATTG 2 cut(s) 345, 2063
MvaI CCWGG 9 cut(s) 161, 327, 336, 545, 932, 1061, 1826, 1880, 2388
MwoI GCNNNNNNNGC 8 cut(s) 182, 191, 250, 356, 626, 757, 871, 1452
NcoI CCATGG 1 cut(s) 2291
NlaIII CATG 6 cut(s) 354, 398, 634, 1260, 2295, 2395
NlaIV GGNNCC 3 cut(s) 89, 324, 1190
NmeAIII GCCGAG 1 cut(s) 64
NmuCI GTSAC 5 cut(s) 407, 472, 1206, 1669, 2230
NsiI ATGCAT 2 cut(s) 2050, 2086
NspI RCATGY 1 cut(s) 354
PaeI GCATGC 1 cut(s) 354
PaqCI CACCTGC 1 cut(s) 1256
PdmI GAANNNNTTC 1 cut(s) 2407
PfeI GAWTC 5 cut(s) 14, 500, 1753, 2031, 2199
PflMI CCANNNNNTGG 1 cut(s) 1591
PfoI TCCNGGA 1 cut(s) 930
PleI GAGTC 4 cut(s) 358, 643, 763, 1585
PpsI GAGTC 4 cut(s) 358, 643, 763, 1585
PpuMI RGGWCCY 1 cut(s) 323
PshBI ATTAAT 2 cut(s) 54, 1235
Psp5II RGGWCCY 1 cut(s) 323
Psp6I CCWGG 9 cut(s) 159, 325, 334, 543, 930, 1059, 1824, 1878, 2386
PspFI CCCAGC 2 cut(s) 2212, 2255
PspGI CCWGG 9 cut(s) 159, 325, 334, 543, 930, 1059, 1824, 1878, 2386
PspN4I GGNNCC 3 cut(s) 89, 324, 1190
PspPI GGNCC 4 cut(s) 87, 323, 1272, 1828
PspPPI RGGWCCY 1 cut(s) 323
PsrI GAACNNNNNNTAC 2 cut(s) 102, 134
PstNI CAGNNNCTG 2 cut(s) 1673, 2222
PsuI RGATCY 2 cut(s) 1188, 1770
RsaI GTAC 5 cut(s) 311, 709, 1084, 1158, 1719
RsaNI GTAC 5 cut(s) 310, 708, 1083, 1157, 1718
RseI CAYNNNNRTG 1 cut(s) 1700
Sau96I GGNCC 4 cut(s) 87, 323, 1272, 1828
SchI GAGTC 4 cut(s) 358, 643, 763, 1586
ScrFI CCNGG 9 cut(s) 161, 327, 336, 545, 932, 1061, 1826, 1880, 2388
SduI GDGCHC 4 cut(s) 229, 574, 835, 867
SfcI CTRYAG 2 cut(s) 216, 726
SinI GGWCC 3 cut(s) 323, 1272, 1828
SmiMI CAYNNNNRTG 1 cut(s) 1700
SmlI CTYRAG 3 cut(s) 239, 866, 1757
SmoI CTYRAG 3 cut(s) 239, 866, 1757
SphI GCATGC 1 cut(s) 354
SsiI CCGC 3 cut(s) 1229, 1564, 2165
SspMI CTAG 5 cut(s) 1193, 1850, 2126, 2261, 2412
StyD4I CCNGG 9 cut(s) 159, 325, 334, 543, 930, 1059, 1824, 1878, 2386
StyI CCWWGG 3 cut(s) 317, 1864, 2291
TaaI ACNGT 6 cut(s) 601, 662, 910, 1082, 1161, 2399
TaiI ACGT 3 cut(s) 584, 1723, 1860
TaqI TCGA 6 cut(s) 381, 1163, 1431, 1485, 1648, 2277
TatI WGTACW 2 cut(s) 707, 1082
TauI GCSGC 1 cut(s) 1232
TfiI GAWTC 5 cut(s) 14, 500, 1753, 2031, 2199
TscAI CASTG 5 cut(s) 361, 412, 915, 1005, 1674
TseFI GTSAC 5 cut(s) 407, 472, 1206, 1669, 2230
Tsp45I GTSAC 5 cut(s) 407, 472, 1206, 1669, 2230
TspDTI ATGAA 4 cut(s) 821, 881, 1542, 2227
TspRI CASTG 5 cut(s) 361, 412, 915, 1005, 1674
Van91I CCANNNNNTGG 1 cut(s) 1591
VneI GTGCAC 2 cut(s) 225, 570
VpaK11BI GGWCC 3 cut(s) 323, 1272, 1828
VspI ATTAAT 2 cut(s) 54, 1235
XagI CCTNNNNNAGG 1 cut(s) 1868
XapI RAATTY 5 cut(s) 231, 435, 1264, 1883, 2140
XceI RCATGY 1 cut(s) 354
XmnI GAANNNNTTC 1 cut(s) 2407
XspI CTAG 5 cut(s) 1193, 1850, 2126, 2261, 2412
Zsp2I ATGCAT 2 cut(s) 2050, 2086
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.