Rw6G033840

protein FAR1-RELATED SEQUENCE

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
58430225 .. 58435536
5312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G033840.1

Sequence Viewer

Length: 2556 bp
ATGGATAATGCAAACTGTACAAGCTTGGGCAATCAGCCAACAAGTAATACCAAAGACTTACAAGGTAAAGAGCAGTGTGATCATTCTCATTGTGAACCTACTGATGATTTGCATGTAGTGAATGAAAATAATGAAGAGGCAATTGAAGAGGTCATTCTTGGAAAAGAGTTTATGGATGTTGAGAGTGCATCTAAGTTTTATAACAATTATGGTGGCAAACATGGATTCAATGTGAGGATAAGAAACAGTAGGAAAAACATTGAGAATTTTGTGACATGGGTACGTTATTGTTGTTCAAAAGAAGGTTTCAGGATAAAGGACAAGCGTCGTACAAATGCATCTTATTCTCAACCAGTTACAAGATGTGGTTGTCAAGCTCATCTGACCATCCAACTGCAGAAGAATGGAAATTTCAAGGTTGTCTCATTTGAGAAAAATCATAATCATCCTTTGATTAGTACTCCAATGAAGCATTTGCTTAAAGTCAATAGAAATATATCTGAGGCACAAAAAGCACATGCAGATGATGCTGAATGTTCTGGTTTCTCCATAAAAGCAACTGTGGAGCTGATGAGCAGAGAAGTGGGAGGGCCAGAGTATCTTGGATTTTCACACAAGGATTACATGAATTACATACATAGAAAGCGAATGTCTAAAATGGAAAAGGGAGATGCAGGTGCTATATTACAGTACTTTCAGAAGATGCAATCTGAGAATTCGTCATATTTTTATTCAATCCAACTTGATGAGGATGATATGATCACCAATATATTTTGGGCTGATGCTCGATCGGTAAGTGATTATAGTCATTTTGGAGATGTGATTTGTTTTGATACAACGTACAGAACAAACGAATATGGTCGACCATTTGCACCGTTTGTTGGGGTTAATCATCATAAGCAAACAACACTATTTGGTGCAGCTTTGTTATATGATGAAACAACAGAGTCTTTTAGGTGGTTATTTGAGACATTCCTCTCTACTATGTCTGGTAAGCAACCATTGACCATTCTCACTGATCAGTCTGCTGCCATGGCTAAAGCAATAAAAGATGTTTTTCCACAAGCTACTCATCGCTTATGTGTTTGGCATCTTTATCAAAATGCTGCTAAGAATCTAAGTCATGTCTTTCATGGATCTTCAGAATTTGTTGAAGATTTTAGCAATTGTATGTATGACTATGAGTTTGAGCATGAGTGGCTATTAGCATGGAATCATATGCTTGAGAAATATAGCCTCAAGGAAAACAAGTGGCTGAATAATTTATTTGAATTGCGAGAAAAATGGGCGTTGGTGTATGGGAGACATACTTTCACCGCGGATATGAAAAGCACACAACGTAGTGAATGCATGAATAATGTGCTTAAGAAATATTTGAGGCCGGAGCATAATCTTTTGCGGTTTTTTGAACATTATGAAAGAGTTTTAGCTGATCGAAGATATGAAGAGTTGATTGCTGAATACAAGATGATACAAACAACTCCTGTCTTAGCAGTAAGTGCACATATGCTGCAACATGCAGCAGAGGTCTATACTCCAATGGTTTTCTTGCTGTTTCAAAAAGAATTTGTGAGAATTCATAATTATAGTACTTACAAGGTTGGCAAGTCTGGGTCGACATCAGAGTATATAGTATCATATAGTTCTGAACATAATGAGCACTTGGTCAGATATGAAGATTCAGCACAAAATGTTGATTGTAGTTGTAAAAAGTTTACTTTTGTTGGGATTCTGTGTGTTCATGCACTAAAAGTGCTTGACAAGAAGAATGTGAAGAAGATTCCACCGCAATACATTTTAAAGCGATGGACAAGAGAAGCAAAAATTATGAGTATTACTAGTTATCATGGAAATGAGGTTCACGGTAATCCTAAGGAATCGATCGGCAAACGGTATGGCTACTTGTGCCGCACTTCTCGTGATATATTAACTGTTGCAGCAGATGATGAAGAGTTAACAAGATATGCACATGAATGTTTGGTTGAGATGCTCAAAGGATTAGAGCTAATAAAGAAAAATCGCAATGAGAAAGAGGGGAGAAGTTCTGGTCATAGTTCACAAGATAAAACTACTTTTGAAAGTGAAGAGGTTGAGGGAATAGTTCAATCTAATGCTTGTGAAACAACAATTGTGCGTGGAGTTAAAAGAAAAGCTACAATTGGTCGTCCACGTACCAGATTCAAAGACCCGGCTGAAAAAAAAAAGAGTAAAGTACCGAAGAAAAGCACAAAAGCTCCCACAAGAAGAAAAATACCCATGCAGAGCTTAGTAGTCTCTTTTGAAACAAACCAGTTGGTTAATCTCATGTCCTGCTCTACTAATTTGTTCTTCAATGGAGCAACCCAGCAACAAATACGACAAGAGCCAATCATCATAATCAGACCACGGCATCACTGTATTAATCAGTTCACGGTGAAGATGGTTCTCTTTCTGATAATAGTTACTCCTGAAGGATGCCATGAGACACCTTCTTCGATCTTGTTGACTGAAAAACACTTGGCAAAATGTATGCAATATTGGGAAGACAGAGGAGGAGATAATCACACGATAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

851

Amino Acids

98.47

Weight (kDa)

8.54

Isoelectric Point (pI)

43.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 65 - 152 7.5e-22 FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like PF21056 235 - 357 2.3e-13 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 274 - 368 2.1e-32 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 201
AarI CACCTGC 1 cut(s) 665
Acc36I ACCTGC 1 cut(s) 665
AccI GTMKAC 2 cut(s) 862, 1616
AccII CGCG 1 cut(s) 1319
AciI CCGC 5 cut(s) 1317, 1319, 1399, 1787, 1909
AclWI GGATC 1 cut(s) 1144
AcsI RAATTY 6 cut(s) 265, 409, 715, 1145, 1565, 1575
AcuI CTGAAG 2 cut(s) 1125, 2469
AfaI GTAC 9 cut(s) 19, 282, 331, 460, 692, 842, 1591, 2173, 2214
AfiI CCNNNNNNNGG 1 cut(s) 881
AflII CTTAAG 1 cut(s) 1364
AhlI ACTAGT 1 cut(s) 1838
AloI GAACNNNNNNTCC 2 cut(s) 1842, 1874
Alw21I GWGCWC 2 cut(s) 1504, 1662
Alw26I GTCTC 5 cut(s) 427, 962, 1297, 2278, 2456
Alw44I GTGCAC 1 cut(s) 1500
AlwI GGATC 1 cut(s) 1144
AoxI GGCC 2 cut(s) 590, 1379
ApaLI GTGCAC 1 cut(s) 1500
ApeKI GCWGC 6 cut(s) 920, 1028, 1106, 1510, 1520, 1937
ApoI RAATTY 6 cut(s) 265, 409, 715, 1145, 1565, 1575
ArsI GACNNNNNNTTYG 4 cut(s) 1169, 1201, 2455, 2487
AseI ATTAAT 1 cut(s) 2400
AspS9I GGNCC 1 cut(s) 590
AsuC2I CCSGG 1 cut(s) 2189
AsuHPI GGTGA 3 cut(s) 754, 1306, 2425
AxyI CCTNAGG 1 cut(s) 1872
BaeGI GKGCMC 1 cut(s) 1504
BauI CACGAG 1 cut(s) 1917
BbsI GAAGAC 1 cut(s) 2529
Bbv12I GWGCWC 2 cut(s) 1504, 1662
BbvI GCAGC 6 cut(s) 932, 1015, 1093, 1497, 1532, 1949
BccI CCATC 3 cut(s) 395, 1800, 2413
BceAI ACGGC 1 cut(s) 2402
BclI TGATCA 3 cut(s) 79, 759, 1018
BcnI CCSGG 1 cut(s) 2189
BcoDI GTCTC 5 cut(s) 427, 962, 1297, 2278, 2456
BcuI ACTAGT 1 cut(s) 1838
BfaI CTAG 1 cut(s) 1839
BfmI CTRYAG 1 cut(s) 395
BfrI CTTAAG 1 cut(s) 1364
BfuAI ACCTGC 1 cut(s) 665
BisI GCNGC 7 cut(s) 921, 1029, 1107, 1511, 1521, 1909, 1938
BlsI GCNGC 7 cut(s) 922, 1030, 1108, 1512, 1522, 1910, 1939
BmcAI AGTACT 3 cut(s) 460, 692, 1591
Bme1390I CCNGG 1 cut(s) 2189
BmgT120I GGNCC 1 cut(s) 590
BmrFI CCNGG 1 cut(s) 2189
BoxI GACNNNNGTC 1 cut(s) 324
BpiI GAAGAC 1 cut(s) 2529
BpuEI CTTGAG 2 cut(s) 1223, 1244
BpuMI CCSGG 1 cut(s) 2189
Bsa29I ATCGAT 1 cut(s) 1880
BsaAI YACGTR 1 cut(s) 2171
BsaJI CCNNGG 3 cut(s) 1032, 1317, 2384
BsaXI ACNNNNNCTCC 2 cut(s) 2218, 2248
Bsc4I CCNNNNNNNGG 1 cut(s) 881
Bse1I ACTGG 2 cut(s) 353, 2290
Bse21I CCTNAGG 1 cut(s) 1872
Bse3DI GCAATG 1 cut(s) 2029
BseCI ATCGAT 1 cut(s) 1880
BseDI CCNNGG 3 cut(s) 1032, 1317, 2384
BseGI GGATG 5 cut(s) 181, 387, 445, 757, 2459
BseLI CCNNNNNNNGG 1 cut(s) 881
BseMI GCAATG 1 cut(s) 2029
BseMII CTCAG 2 cut(s) 492, 702
BseNI ACTGG 2 cut(s) 353, 2290
BseRI GAGGAG 2 cut(s) 2544, 2547
BseSI GKGCMC 1 cut(s) 1504
BseXI GCAGC 6 cut(s) 932, 1015, 1093, 1497, 1532, 1949
BseYI CCCAGC 1 cut(s) 2343
BsgI GTGCAG 1 cut(s) 939
Bsh1236I CGCG 1 cut(s) 1319
Bsh1285I CGRYCG 2 cut(s) 791, 1884
BshFI GGCC 2 cut(s) 592, 1381
BshVI ATCGAT 1 cut(s) 1880
BsiEI CGRYCG 2 cut(s) 791, 1884
BsiHKAI GWGCWC 2 cut(s) 1504, 1662
BsiSI CCGG 2 cut(s) 1382, 2189
BslI CCNNNNNNNGG 1 cut(s) 881
BsmAI GTCTC 5 cut(s) 427, 962, 1297, 2278, 2456
BsmI GAATGC 1 cut(s) 1352
BsnI GGCC 2 cut(s) 592, 1381
Bsp1286I GDGCHC 2 cut(s) 1504, 1662
Bsp1407I TGTACA 1 cut(s) 17
Bsp143I GATC 8 cut(s) 79, 759, 788, 1018, 1136, 1432, 1881, 2475
Bsp19I CCATGG 1 cut(s) 1032
BspACI CCGC 5 cut(s) 1317, 1319, 1399, 1787, 1909
BspANI GGCC 2 cut(s) 592, 1381
BspCNI CTCAG 2 cut(s) 493, 703
BspDI ATCGAT 1 cut(s) 1880
BspFNI CGCG 1 cut(s) 1319
BspMAI CTGCAG 1 cut(s) 399
BspMI ACCTGC 1 cut(s) 665
BspPI GGATC 1 cut(s) 1144
BspTI CTTAAG 1 cut(s) 1364
BsrDI GCAATG 1 cut(s) 2029
BsrGI TGTACA 1 cut(s) 17
BsrI ACTGG 2 cut(s) 353, 2290
BssECI CCNNGG 3 cut(s) 1032, 1317, 2384
BssMI GATC 8 cut(s) 79, 759, 788, 1018, 1136, 1432, 1881, 2475
BssSI CACGAG 1 cut(s) 1917
BssT1I CCWWGG 1 cut(s) 1032
Bst2BI CACGAG 1 cut(s) 1917
Bst6I CTCTTC 5 cut(s) 129, 141, 1440, 1944, 2079
BstAFI CTTAAG 1 cut(s) 1364
BstAPI GCANNNNNTGC 2 cut(s) 527, 1499
BstAUI TGTACA 1 cut(s) 17
BstBAI YACGTR 1 cut(s) 2171
BstDEI CTNAG 9 cut(s) 192, 501, 711, 1110, 1118, 1489, 1872, 2266, 2553
BstDSI CCRYGG 3 cut(s) 1032, 1317, 2384
BstF5I GGATG 5 cut(s) 181, 387, 445, 757, 2459
BstFNI CGCG 1 cut(s) 1319
BstKTI GATC 8 cut(s) 82, 762, 791, 1021, 1139, 1435, 1884, 2478
BstMAI GTCTC 5 cut(s) 427, 962, 1297, 2278, 2456
BstMBI GATC 8 cut(s) 79, 759, 788, 1018, 1136, 1432, 1881, 2475
BstMCI CGRYCG 2 cut(s) 791, 1884
BstMWI GCNNNNNNNGC 6 cut(s) 512, 527, 1034, 1198, 1499, 1905
BstNSI RCATGY 3 cut(s) 116, 521, 1520
BstPAI GACNNNNGTC 1 cut(s) 324
BstSCI CCNGG 1 cut(s) 2187
BstSFI CTRYAG 1 cut(s) 395
BstSLI GKGCMC 1 cut(s) 1504
BstUI CGCG 1 cut(s) 1319
BstV1I GCAGC 6 cut(s) 932, 1015, 1093, 1497, 1532, 1949
BstV2I GAAGAC 1 cut(s) 2529
BstX2I RGATCY 1 cut(s) 1136
BstYI RGATCY 1 cut(s) 1136
Bsu15I ATCGAT 1 cut(s) 1880
Bsu36I CCTNAGG 1 cut(s) 1872
BsuRI GGCC 2 cut(s) 592, 1381
BsuTUI ATCGAT 1 cut(s) 1880
BtgI CCRYGG 3 cut(s) 1032, 1317, 2384
BtgZI GCGATG 2 cut(s) 1058, 1819
BtsCI GGATG 5 cut(s) 181, 387, 445, 757, 2459
BtsI GCAGTG 1 cut(s) 80
BtsIMutI CAGTG 3 cut(s) 80, 1014, 2392
BveI ACCTGC 1 cut(s) 665
Cfr13I GGNCC 1 cut(s) 590
Cfr42I CCGCGG 1 cut(s) 1320
ClaI ATCGAT 1 cut(s) 1880
CseI GACGC 1 cut(s) 314
Csp6I GTAC 9 cut(s) 18, 281, 330, 459, 691, 841, 1590, 2172, 2213
CspCI CAANNNNNGTGG 2 cut(s) 193, 228
CviQI GTAC 9 cut(s) 18, 281, 330, 459, 691, 841, 1590, 2172, 2213
DdeI CTNAG 9 cut(s) 192, 501, 711, 1110, 1118, 1489, 1872, 2266, 2553
DpnI GATC 8 cut(s) 81, 761, 790, 1020, 1138, 1434, 1883, 2477
DpnII GATC 8 cut(s) 79, 759, 788, 1018, 1136, 1432, 1881, 2475
DraI TTTAAA 1 cut(s) 1800
Eam1104I CTCTTC 5 cut(s) 129, 141, 1440, 1944, 2079
EarI CTCTTC 5 cut(s) 129, 141, 1440, 1944, 2079
Eco130I CCWWGG 1 cut(s) 1032
Eco57I CTGAAG 2 cut(s) 1125, 2469
Eco81I CCTNAGG 1 cut(s) 1872
EcoRI GAATTC 2 cut(s) 715, 1575
EcoT14I CCWWGG 1 cut(s) 1032
EcoT22I ATGCAT 2 cut(s) 340, 1352
ErhI CCWWGG 1 cut(s) 1032
FauNDI CATATG 2 cut(s) 1218, 1506
FbaI TGATCA 3 cut(s) 79, 759, 1018
FblI GTMKAC 2 cut(s) 862, 1616
Fnu4HI GCNGC 7 cut(s) 921, 1029, 1107, 1511, 1521, 1909, 1938
FokI GGATG 5 cut(s) 188, 374, 432, 764, 2466
Fsp4HI GCNGC 7 cut(s) 921, 1029, 1107, 1511, 1521, 1909, 1938
FspBI CTAG 1 cut(s) 1839
GluI GCNGC 7 cut(s) 921, 1029, 1107, 1511, 1521, 1909, 1938
GsaI CCCAGC 1 cut(s) 2347
HaeIII GGCC 2 cut(s) 592, 1381
HapII CCGG 2 cut(s) 1382, 2189
HgaI GACGC 1 cut(s) 314
HincII GTYRAC 4 cut(s) 863, 1617, 1956, 2484
HindII GTYRAC 4 cut(s) 863, 1617, 1956, 2484
HindIII AAGCTT 1 cut(s) 22
HinfI GANTC 9 cut(s) 225, 947, 1114, 1213, 1679, 1729, 1780, 1877, 2178
HpaI GTTAAC 1 cut(s) 1956
HpaII CCGG 2 cut(s) 1382, 2189
HphI GGTGA 3 cut(s) 754, 1306, 2425
Hpy188III TCNNGA 3 cut(s) 310, 1919, 2447
Hpy99I CGWCG 1 cut(s) 330
HpyAV CCTTC 3 cut(s) 296, 2444, 2478
HpyCH4IV ACGT 4 cut(s) 283, 839, 1339, 2170
HpyF10VI GCNNNNNNNGC 6 cut(s) 512, 527, 1034, 1198, 1499, 1905
HpyF3I CTNAG 9 cut(s) 192, 501, 711, 1110, 1118, 1489, 1872, 2266, 2553
HpySE526I ACGT 4 cut(s) 283, 839, 1339, 2170
Ksp22I TGATCA 3 cut(s) 79, 759, 1018
KspAI GTTAAC 1 cut(s) 1956
KspI CCGCGG 1 cut(s) 1320
Kzo9I GATC 8 cut(s) 79, 759, 788, 1018, 1136, 1432, 1881, 2475
LmnI GCTCC 4 cut(s) 565, 1384, 2239, 2336
Lsp1109I GCAGC 6 cut(s) 932, 1015, 1093, 1497, 1532, 1949
MaeI CTAG 1 cut(s) 1839
MaeII ACGT 4 cut(s) 283, 839, 1339, 2170
MaeIII GTNAC 3 cut(s) 271, 355, 2440
MalI GATC 8 cut(s) 81, 761, 790, 1020, 1138, 1434, 1883, 2477
MboI GATC 8 cut(s) 79, 759, 788, 1018, 1136, 1432, 1881, 2475
MfeI CAATTG 4 cut(s) 141, 1165, 2127, 2157
MflI RGATCY 1 cut(s) 1136
MhlI GDGCHC 2 cut(s) 1504, 1662
MlyI GAGTC 1 cut(s) 956
MmeI TCCRAC 2 cut(s) 415, 763
Mph1103I ATGCAT 2 cut(s) 340, 1352
MseI TTAA 9 cut(s) 480, 888, 1365, 1799, 1928, 1955, 2142, 2298, 2400
MslI CAYNNNNRTG 3 cut(s) 522, 1851, 1972
MspA1I CMGCKG 1 cut(s) 1319
MspCI CTTAAG 1 cut(s) 1364
MspI CCGG 2 cut(s) 1382, 2189
MspR9I CCNGG 1 cut(s) 2189
MunI CAATTG 4 cut(s) 141, 1165, 2127, 2157
Mva1269I GAATGC 1 cut(s) 1352
MvnI CGCG 1 cut(s) 1319
MwoI GCNNNNNNNGC 6 cut(s) 512, 527, 1034, 1198, 1499, 1905
NciI CCSGG 1 cut(s) 2189
NcoI CCATGG 1 cut(s) 1032
NdeI CATATG 2 cut(s) 1218, 1506
NdeII GATC 8 cut(s) 79, 759, 788, 1018, 1136, 1432, 1881, 2475
NmuCI GTSAC 1 cut(s) 271
NsiI ATGCAT 2 cut(s) 340, 1352
NspI RCATGY 3 cut(s) 116, 521, 1520
PaqCI CACCTGC 1 cut(s) 665
PctI GAATGC 1 cut(s) 1352
PfeI GAWTC 8 cut(s) 225, 1114, 1213, 1679, 1729, 1780, 1877, 2178
PkrI GCNGC 7 cut(s) 922, 1030, 1108, 1512, 1522, 1910, 1939
Ple19I CGATCG 2 cut(s) 791, 1884
PleI GAGTC 1 cut(s) 955
PpsI GAGTC 1 cut(s) 955
Ppu21I YACGTR 1 cut(s) 2171
PshAI GACNNNNGTC 1 cut(s) 324
PshBI ATTAAT 1 cut(s) 2400
PsiI TTATAA 1 cut(s) 201
PspFI CCCAGC 1 cut(s) 2343
PspPI GGNCC 1 cut(s) 590
PstI CTGCAG 1 cut(s) 399
PsuI RGATCY 1 cut(s) 1136
PvuI CGATCG 2 cut(s) 791, 1884
RsaI GTAC 9 cut(s) 19, 282, 331, 460, 692, 842, 1591, 2173, 2214
RsaNI GTAC 9 cut(s) 18, 281, 330, 459, 691, 841, 1590, 2172, 2213
RseI CAYNNNNRTG 3 cut(s) 522, 1851, 1972
SacII CCGCGG 1 cut(s) 1320
SalI GTCGAC 2 cut(s) 861, 1615
SaqAI TTAA 9 cut(s) 480, 888, 1365, 1799, 1928, 1955, 2142, 2298, 2400
SatI GCNGC 7 cut(s) 921, 1029, 1107, 1511, 1521, 1909, 1938
Sau3AI GATC 8 cut(s) 79, 759, 788, 1018, 1136, 1432, 1881, 2475
Sau96I GGNCC 1 cut(s) 590
ScaI AGTACT 3 cut(s) 460, 692, 1591
SchI GAGTC 1 cut(s) 956
ScrFI CCNGG 1 cut(s) 2189
SduI GDGCHC 2 cut(s) 1504, 1662
SfcI CTRYAG 1 cut(s) 395
Sfr303I CCGCGG 1 cut(s) 1320
SgrBI CCGCGG 1 cut(s) 1320
SmiMI CAYNNNNRTG 3 cut(s) 522, 1851, 1972
SmlI CTYRAG 3 cut(s) 1223, 1238, 1364
SmoI CTYRAG 3 cut(s) 1223, 1238, 1364
SpeI ACTAGT 1 cut(s) 1838
SsiI CCGC 5 cut(s) 1317, 1319, 1399, 1787, 1909
SspI AATATT 2 cut(s) 1373, 2516
SspMI CTAG 1 cut(s) 1839
StyD4I CCNGG 1 cut(s) 2187
StyI CCWWGG 1 cut(s) 1032
TaiI ACGT 4 cut(s) 286, 842, 1342, 2173
TaqI TCGA 6 cut(s) 787, 862, 1435, 1616, 1880, 2474
TatI WGTACW 4 cut(s) 17, 458, 690, 1589
TauI GCSGC 1 cut(s) 1911
TfiI GAWTC 8 cut(s) 225, 1114, 1213, 1679, 1729, 1780, 1877, 2178
Tru1I TTAA 9 cut(s) 480, 888, 1365, 1799, 1928, 1955, 2142, 2298, 2400
Tru9I TTAA 9 cut(s) 480, 888, 1365, 1799, 1928, 1955, 2142, 2298, 2400
TscAI CASTG 3 cut(s) 80, 1021, 2399
TseFI GTSAC 1 cut(s) 271
TseI GCWGC 6 cut(s) 920, 1028, 1106, 1510, 1520, 1937
Tsp45I GTSAC 1 cut(s) 271
TspRI CASTG 3 cut(s) 80, 1021, 2399
Vha464I CTTAAG 1 cut(s) 1364
VneI GTGCAC 1 cut(s) 1500
VspI ATTAAT 1 cut(s) 2400
XapI RAATTY 6 cut(s) 265, 409, 715, 1145, 1565, 1575
XceI RCATGY 3 cut(s) 116, 521, 1520
XmiI GTMKAC 2 cut(s) 862, 1616
XspI CTAG 1 cut(s) 1839
ZrmI AGTACT 3 cut(s) 460, 692, 1591
Zsp2I ATGCAT 2 cut(s) 340, 1352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.