Rh6AG074500

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000325
Physical Location & Seq
Forward (+)
10571786 .. 10573198
1413 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG074500.1

Sequence Viewer

Length: 636 bp
ATGAGTATTACTAGTTATCATCCTACTGAGATTCATGGTAATCCTAAGGAGTCGATTGGCAGACGGTATGGCTACTTGTGCCGTACTTCTCGTGATATTTTAACTATTGCAGCAGATGATGAAGAGTTAACGAGATATGCACATGAATGTTTGGTTGAGATGCTCAAAGGCTTAGAGTTAATAAAGAAAAATCGCACTGAGAAAGAGGGGAGAAGTTCTAGTGATAGCAGCGAAGTGAATGCTACTTTTGGTCAAAGTGAAGAGGTTGAGGGAATAGTTCAATCTAATGCTTGTGAAACAACAATTATCCGTGGAGTTAAAAGAAAAGCTACAATTGGCCGTCCACATACCAGATTCAAAGACCCGGCTGAAAAAAAAAAGAGTAAAGTACCAAAGAAAAGCACAAAAGCTCCCACAAGAAGGAAAATACGCATGCAGGAATTTGAAAGCATTTTGGTCAGTTCAGAAACACACCAAAATAGTGAACATGATGTTCAACTATCTGGTGTTTTGACTCAAGTGAGATTGGAACTTGGGACCTCGGACGTAGGGTGGATGCTGAGTAAAGAGGATCAGATTTTGGATGACAACCCTGCTGAAGCTTATTCGTCTATAGAAGATTCAGTCAACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

211

Amino Acids

23.74

Weight (kDa)

6.34

Isoelectric Point (pI)

55.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 579
AcoI YGGCCR 1 cut(s) 337
AcsI RAATTY 1 cut(s) 440
AcuI CTGAAG 1 cut(s) 618
AfaI GTAC 2 cut(s) 85, 390
AfiI CCNNNNNNNGG 1 cut(s) 420
AgsI TTSAA 4 cut(s) 281, 358, 446, 497
AhlI ACTAGT 1 cut(s) 11
AluBI AGCT 3 cut(s) 329, 410, 602
AluI AGCT 3 cut(s) 329, 410, 602
AlwI GGATC 1 cut(s) 579
AoxI GGCC 1 cut(s) 337
ApeKI GCWGC 2 cut(s) 110, 228
ApoI RAATTY 1 cut(s) 440
AspS9I GGNCC 1 cut(s) 537
AsuC2I CCSGG 1 cut(s) 365
AvaII GGWCC 1 cut(s) 537
AxyI CCTNAGG 1 cut(s) 45
BauI CACGAG 1 cut(s) 90
BbvI GCAGC 2 cut(s) 122, 240
BceAI ACGGC 2 cut(s) 66, 324
BcgI CGANNNNNNTGC 2 cut(s) 221, 255
BcnI CCSGG 1 cut(s) 365
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 2 cut(s) 12, 219
BfmI CTRYAG 1 cut(s) 612
BisI GCNGC 2 cut(s) 111, 229
BlsI GCNGC 2 cut(s) 112, 230
Bme1390I CCNGG 1 cut(s) 365
Bme18I GGWCC 1 cut(s) 537
BmgT120I GGNCC 1 cut(s) 537
BmiI GGNNCC 1 cut(s) 538
BmrFI CCNGG 1 cut(s) 365
BmsI GCATC 2 cut(s) 150, 546
BpuEI CTTGAG 1 cut(s) 501
BpuMI CCSGG 1 cut(s) 365
BsaJI CCNNGG 2 cut(s) 310, 540
BsaXI ACNNNNNCTCC 2 cut(s) 394, 424
Bsc4I CCNNNNNNNGG 1 cut(s) 420
Bse21I CCTNAGG 1 cut(s) 45
BseDI CCNNGG 2 cut(s) 310, 540
BseGI GGATG 3 cut(s) 19, 561, 589
BseLI CCNNNNNNNGG 1 cut(s) 420
BseMII CTCAG 3 cut(s) 18, 189, 551
BseXI GCAGC 2 cut(s) 122, 240
BshFI GGCC 1 cut(s) 339
BsiSI CCGG 1 cut(s) 365
BslFI GGGAC 1 cut(s) 550
BslI CCNNNNNNNGG 1 cut(s) 420
BsmFI GGGAC 1 cut(s) 550
BsmI GAATGC 1 cut(s) 244
BsnI GGCC 1 cut(s) 339
Bsp143I GATC 1 cut(s) 571
BspANI GGCC 1 cut(s) 339
BspCNI CTCAG 3 cut(s) 19, 190, 552
BspLI GGNNCC 1 cut(s) 538
BspPI GGATC 1 cut(s) 579
BssECI CCNNGG 2 cut(s) 310, 540
BssMI GATC 1 cut(s) 571
BssSI CACGAG 1 cut(s) 90
Bst2BI CACGAG 1 cut(s) 90
Bst4CI ACNGT 1 cut(s) 66
Bst6I CTCTTC 2 cut(s) 117, 255
BstC8I GCNNGC 1 cut(s) 434
BstDEI CTNAG 5 cut(s) 27, 45, 172, 198, 560
BstDSI CCRYGG 1 cut(s) 310
BstF5I GGATG 3 cut(s) 19, 561, 589
BstKTI GATC 1 cut(s) 574
BstMBI GATC 1 cut(s) 571
BstMWI GCNNNNNNNGC 1 cut(s) 78
BstNSI RCATGY 1 cut(s) 436
BstSCI CCNGG 1 cut(s) 363
BstSFI CTRYAG 1 cut(s) 612
BstV1I GCAGC 2 cut(s) 122, 240
Bsu36I CCTNAGG 1 cut(s) 45
BsuRI GGCC 1 cut(s) 339
BtgI CCRYGG 1 cut(s) 310
BtsCI GGATG 3 cut(s) 19, 561, 589
BtsIMutI CAGTG 1 cut(s) 195
Cac8I GCNNGC 1 cut(s) 434
Cfr13I GGNCC 1 cut(s) 537
Csp6I GTAC 2 cut(s) 84, 389
CviAII CATG 4 cut(s) 35, 143, 433, 488
CviJI RGCY 7 cut(s) 72, 171, 329, 339, 368, 410, 602
CviKI_1 RGCY 7 cut(s) 72, 171, 329, 339, 368, 410, 602
CviQI GTAC 2 cut(s) 84, 389
DdeI CTNAG 5 cut(s) 27, 45, 172, 198, 560
DpnI GATC 1 cut(s) 573
DpnII GATC 1 cut(s) 571
EaeI YGGCCR 1 cut(s) 337
Eam1104I CTCTTC 2 cut(s) 117, 255
EarI CTCTTC 2 cut(s) 117, 255
Eco47I GGWCC 1 cut(s) 537
Eco57I CTGAAG 1 cut(s) 618
Eco81I CCTNAGG 1 cut(s) 45
EcoO109I RGGNCCY 1 cut(s) 537
FaeI CATG 4 cut(s) 38, 146, 436, 491
FaiI YATR 8 cut(s) 36, 69, 138, 144, 348, 434, 489, 614
FaqI GGGAC 1 cut(s) 550
FatI CATG 4 cut(s) 34, 142, 432, 487
Fnu4HI GCNGC 2 cut(s) 111, 229
FokI GGATG 3 cut(s) 6, 568, 596
Fsp4HI GCNGC 2 cut(s) 111, 229
FspBI CTAG 2 cut(s) 12, 219
GluI GCNGC 2 cut(s) 111, 229
HaeIII GGCC 1 cut(s) 339
HapII CCGG 1 cut(s) 365
Hin1II CATG 4 cut(s) 38, 146, 436, 491
HincII GTYRAC 2 cut(s) 129, 628
HindII GTYRAC 2 cut(s) 129, 628
HindIII AAGCTT 1 cut(s) 600
HinfI GANTC 5 cut(s) 31, 50, 354, 514, 620
HpaI GTTAAC 1 cut(s) 129
HpaII CCGG 1 cut(s) 365
Hpy166II GTNNAC 4 cut(s) 129, 344, 485, 628
Hpy188I TCNGA 3 cut(s) 466, 544, 576
Hpy188III TCNNGA 1 cut(s) 92
Hpy8I GTNNAC 4 cut(s) 129, 344, 485, 628
HpyAV CCTTC 1 cut(s) 414
HpyCH4III ACNGT 1 cut(s) 66
HpyCH4IV ACGT 1 cut(s) 546
HpyCH4V TGCA 3 cut(s) 110, 140, 436
HpyF10VI GCNNNNNNNGC 1 cut(s) 78
HpyF3I CTNAG 5 cut(s) 27, 45, 172, 198, 560
HpySE526I ACGT 1 cut(s) 546
Hsp92II CATG 4 cut(s) 38, 146, 436, 491
KspAI GTTAAC 1 cut(s) 129
Kzo9I GATC 1 cut(s) 571
LmnI GCTCC 1 cut(s) 415
LpnPI CCDG 5 cut(s) 364, 378, 422, 489, 606
Lsp1109I GCAGC 2 cut(s) 122, 240
LweI GCATC 2 cut(s) 150, 546
MaeI CTAG 2 cut(s) 12, 219
MaeII ACGT 1 cut(s) 546
MalI GATC 1 cut(s) 573
MboI GATC 1 cut(s) 571
MboII GAAGA 3 cut(s) 134, 272, 629
MfeI CAATTG 1 cut(s) 333
MluCI AATT 3 cut(s) 303, 333, 440
MlyI GAGTC 2 cut(s) 59, 508
MnlI CCTC 5 cut(s) 199, 256, 262, 550, 562
MseI TTAA 4 cut(s) 101, 128, 179, 318
MslI CAYNNNNRTG 1 cut(s) 145
MspI CCGG 1 cut(s) 365
MspR9I CCNGG 1 cut(s) 365
MunI CAATTG 1 cut(s) 333
Mva1269I GAATGC 1 cut(s) 244
MwoI GCNNNNNNNGC 1 cut(s) 78
NciI CCSGG 1 cut(s) 365
NdeII GATC 1 cut(s) 571
NlaIII CATG 4 cut(s) 38, 146, 436, 491
NlaIV GGNNCC 1 cut(s) 538
NspI RCATGY 1 cut(s) 436
PaeI GCATGC 1 cut(s) 436
PctI GAATGC 1 cut(s) 244
PfeI GAWTC 3 cut(s) 31, 354, 620
PkrI GCNGC 2 cut(s) 112, 230
PleI GAGTC 2 cut(s) 58, 508
PpsI GAGTC 2 cut(s) 58, 508
PpuMI RGGWCCY 1 cut(s) 537
Psp5II RGGWCCY 1 cut(s) 537
PspN4I GGNNCC 1 cut(s) 538
PspPI GGNCC 1 cut(s) 537
PspPPI RGGWCCY 1 cut(s) 537
RsaI GTAC 2 cut(s) 85, 390
RsaNI GTAC 2 cut(s) 84, 389
RseI CAYNNNNRTG 1 cut(s) 145
SaqAI TTAA 4 cut(s) 101, 128, 179, 318
SatI GCNGC 2 cut(s) 111, 229
Sau3AI GATC 1 cut(s) 571
Sau96I GGNCC 1 cut(s) 537
SchI GAGTC 2 cut(s) 59, 508
ScrFI CCNGG 1 cut(s) 365
SetI ASST 6 cut(s) 267, 331, 412, 542, 549, 604
SfaNI GCATC 2 cut(s) 150, 546
SfcI CTRYAG 1 cut(s) 612
SinI GGWCC 1 cut(s) 537
SmiMI CAYNNNNRTG 1 cut(s) 145
SmlI CTYRAG 1 cut(s) 516
SmoI CTYRAG 1 cut(s) 516
SpeI ACTAGT 1 cut(s) 11
SphI GCATGC 1 cut(s) 436
Sse9I AATT 3 cut(s) 303, 333, 440
SspMI CTAG 2 cut(s) 12, 219
StyD4I CCNGG 1 cut(s) 363
TaaI ACNGT 1 cut(s) 66
TaiI ACGT 1 cut(s) 549
TaqI TCGA 1 cut(s) 53
TasI AATT 3 cut(s) 303, 333, 440
TfiI GAWTC 3 cut(s) 31, 354, 620
Tru1I TTAA 4 cut(s) 101, 128, 179, 318
Tru9I TTAA 4 cut(s) 101, 128, 179, 318
TscAI CASTG 1 cut(s) 202
TseI GCWGC 2 cut(s) 110, 228
TspDTI ATGAA 3 cut(s) 23, 135, 159
TspGWI ACGGA 1 cut(s) 299
TspRI CASTG 1 cut(s) 202
VpaK11BI GGWCC 1 cut(s) 537
XapI RAATTY 1 cut(s) 440
XceI RCATGY 1 cut(s) 436
XspI CTAG 2 cut(s) 12, 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.