Rroxscaffold_2G00141280

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000325
Physical Location & Seq
Reverse (-)
79561396 .. 79565006
3611 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00141280.1

Sequence Viewer

Length: 747 bp
ATGGAGTCTCCGGCATCATCTTCCCAAGCTGCGGCGGTGAGTTCTTGCCGGAGGAAGAAGAATTTCGGAAGCGGCAGCTTTGTATCAGATTTAAGGTCTCACATTCATGAGTTTATTCATGCTTCCGTGGATGAACACAGGATTTGCTTGGTGGATACCTTTAAGAAGGTCAGAGGAATCAAGGTTAAAGAAAGAATTATTCGTGAGGAGGAATCTATTAGACCAAAGAATGCTTTGGAAAAGCTCTTAGGAAACAAAAGGTGTAAGAGAGAGGTAGATACTTCATCGAGACACCAAAGAGAACCAGAATTAGATTATTCCAATGTGAACTCCACATGTAATCCTTCACTTGTTAATTCCACAAGTGCTCCTGCTTTACAAAATCAATTGAATGCAAAGAATCCTATATCTTCCACGCATGCTACATTGGAGCTGAAGCCAAATATATTACATGGAGCTCAATTTTCTAAGAATTTCAGAGATTTCAGTGTTGTAACAAATCATCCCCAAGGTTCTGTAATGAATTATCAGCAAGGTTCTATGACGAATTATCAACAAGGCACAATTTCGATTGAAGAAGCACTACTACAAAAATTGAATCGACGACGGCTAAAAACCGTCGTCGATATGGAGGCAAAGCGTCGTCTATCAAGGCGCCGTCCGATGAAGATCGATTGTAGGGAACCGTCGTGTGAAGGGCTCGGCAGCATGGCGCGCAGCATGTCGACAGCATGCCGGCAGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

248

Amino Acids

28.02

Weight (kDa)

9.88

Isoelectric Point (pI)

61.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 654
AccI GTMKAC 1 cut(s) 725
AccII CGCG 1 cut(s) 715
AciI CCGC 3 cut(s) 32, 35, 72
AcsI RAATTY 2 cut(s) 61, 472
AcuI CTGAAG 1 cut(s) 455
AcyI GRCGYC 1 cut(s) 655
AfiI CCNNNNNNNGG 1 cut(s) 31
AflIII ACRYGT 1 cut(s) 335
AgsI TTSAA 3 cut(s) 391, 575, 598
AluBI AGCT 5 cut(s) 29, 78, 244, 433, 458
AluI AGCT 5 cut(s) 29, 78, 244, 433, 458
Alw21I GWGCWC 2 cut(s) 370, 460
Alw26I GTCTC 3 cut(s) 12, 102, 283
ApeKI GCWGC 5 cut(s) 29, 75, 705, 717, 739
ApoI RAATTY 2 cut(s) 61, 472
Asp700I GAANNNNTTC 1 cut(s) 62
AspLEI GCGC 3 cut(s) 657, 715, 717
AsuHPI GGTGA 1 cut(s) 49
BanI GGYRCC 1 cut(s) 654
BanII GRGCYC 2 cut(s) 460, 702
BarI GAAGNNNNNNTAC 4 cut(s) 567, 570, 599, 602
Bbv12I GWGCWC 2 cut(s) 370, 460
BbvI GCAGC 4 cut(s) 16, 87, 717, 729
BceAI ACGGC 2 cut(s) 623, 642
BciVI GTATCC 1 cut(s) 148
BcoDI GTCTC 3 cut(s) 12, 102, 283
BfoI RGCGCY 1 cut(s) 658
BfuI GTATCC 1 cut(s) 148
BisI GCNGC 7 cut(s) 30, 33, 73, 76, 706, 718, 740
BlsI GCNGC 7 cut(s) 31, 34, 74, 77, 707, 719, 741
BmiI GGNNCC 2 cut(s) 656, 684
BmsI GCATC 1 cut(s) 23
Bsa29I ATCGAT 1 cut(s) 672
BsaBI GATNNNNATC 1 cut(s) 668
BsaHI GRCGYC 1 cut(s) 655
BsaI GGTCTC 1 cut(s) 102
BsaJI CCNNGG 2 cut(s) 126, 508
BsaXI ACNNNNNCTCC 2 cut(s) 352, 382
Bsc4I CCNNNNNNNGG 1 cut(s) 31
Bse118I RCCGGY 1 cut(s) 735
Bse8I GATNNNNATC 1 cut(s) 668
BseCI ATCGAT 1 cut(s) 672
BseDI CCNNGG 2 cut(s) 126, 508
BseGI GGATG 2 cut(s) 136, 502
BseJI GATNNNNATC 1 cut(s) 668
BseLI CCNNNNNNNGG 1 cut(s) 31
BsePI GCGCGC 1 cut(s) 713
BseRI GAGGAG 1 cut(s) 221
BseXI GCAGC 4 cut(s) 16, 87, 717, 729
Bsh1236I CGCG 1 cut(s) 715
BshNI GGYRCC 1 cut(s) 654
BshVI ATCGAT 1 cut(s) 672
BsiHKAI GWGCWC 2 cut(s) 370, 460
BsiSI CCGG 3 cut(s) 11, 49, 736
BslI CCNNNNNNNGG 1 cut(s) 31
BsmAI GTCTC 3 cut(s) 12, 102, 283
BsmI GAATGC 2 cut(s) 235, 397
Bso31I GGTCTC 1 cut(s) 102
Bsp1286I GDGCHC 3 cut(s) 370, 460, 702
Bsp143I GATC 1 cut(s) 669
BspACI CCGC 3 cut(s) 32, 35, 72
BspDI ATCGAT 1 cut(s) 672
BspFNI CGCG 1 cut(s) 715
BspHI TCATGA 1 cut(s) 106
BspLI GGNNCC 2 cut(s) 656, 684
BspT107I GGYRCC 1 cut(s) 654
BspTNI GGTCTC 1 cut(s) 102
BsrFI RCCGGY 1 cut(s) 735
BssAI RCCGGY 1 cut(s) 735
BssECI CCNNGG 2 cut(s) 126, 508
BssHII GCGCGC 1 cut(s) 713
BssMI GATC 1 cut(s) 669
BssNI GRCGYC 1 cut(s) 655
BssT1I CCWWGG 1 cut(s) 508
Bst4CI ACNGT 2 cut(s) 619, 687
BstACI GRCGYC 1 cut(s) 655
BstC8I GCNNGC 4 cut(s) 420, 715, 733, 737
BstDEI CTNAG 2 cut(s) 247, 468
BstDSI CCRYGG 1 cut(s) 126
BstF5I GGATG 2 cut(s) 136, 502
BstFNI CGCG 1 cut(s) 715
BstH2I RGCGCY 1 cut(s) 658
BstHHI GCGC 3 cut(s) 657, 715, 717
BstKTI GATC 1 cut(s) 672
BstMAI GTCTC 3 cut(s) 12, 102, 283
BstMBI GATC 1 cut(s) 669
BstMWI GCNNNNNNNGC 1 cut(s) 714
BstNSI RCATGY 4 cut(s) 339, 422, 724, 735
BstUI CGCG 1 cut(s) 715
BstV1I GCAGC 4 cut(s) 16, 87, 717, 729
Bsu15I ATCGAT 1 cut(s) 672
BsuI GTATCC 1 cut(s) 148
BsuTUI ATCGAT 1 cut(s) 672
BtgI CCRYGG 1 cut(s) 126
BtsCI GGATG 2 cut(s) 136, 502
BtsIMutI CAGTG 1 cut(s) 493
Cac8I GCNNGC 4 cut(s) 420, 715, 733, 737
CciI TCATGA 1 cut(s) 106
CfoI GCGC 3 cut(s) 657, 715, 717
Cfr10I RCCGGY 1 cut(s) 735
ClaI ATCGAT 1 cut(s) 672
CseI GACGC 1 cut(s) 629
CviAII CATG 8 cut(s) 107, 119, 336, 419, 452, 709, 721, 732
CviJI RGCY 8 cut(s) 29, 78, 244, 433, 439, 458, 610, 700
CviKI_1 RGCY 8 cut(s) 29, 78, 244, 433, 439, 458, 610, 700
DdeI CTNAG 2 cut(s) 247, 468
DinI GGCGCC 1 cut(s) 656
DpnI GATC 1 cut(s) 671
DpnII GATC 1 cut(s) 669
Ecl136II GAGCTC 1 cut(s) 458
Eco130I CCWWGG 1 cut(s) 508
Eco24I GRGCYC 2 cut(s) 460, 702
Eco31I GGTCTC 1 cut(s) 102
Eco53kI GAGCTC 1 cut(s) 458
Eco57I CTGAAG 1 cut(s) 455
EcoICRI GAGCTC 1 cut(s) 458
EcoT14I CCWWGG 1 cut(s) 508
EcoT38I GRGCYC 2 cut(s) 460, 702
EgeI GGCGCC 1 cut(s) 656
EheI GGCGCC 1 cut(s) 656
ErhI CCWWGG 1 cut(s) 508
FaeI CATG 8 cut(s) 110, 122, 339, 422, 455, 712, 724, 735
FatI CATG 8 cut(s) 106, 118, 335, 418, 451, 708, 720, 731
FblI GTMKAC 1 cut(s) 725
Fnu4HI GCNGC 7 cut(s) 30, 33, 73, 76, 706, 718, 740
FokI GGATG 2 cut(s) 143, 489
FriOI GRGCYC 2 cut(s) 460, 702
Fsp4HI GCNGC 7 cut(s) 30, 33, 73, 76, 706, 718, 740
GlaI GCGC 3 cut(s) 656, 714, 716
GluI GCNGC 7 cut(s) 30, 33, 73, 76, 706, 718, 740
HaeII RGCGCY 1 cut(s) 658
HapII CCGG 3 cut(s) 11, 49, 736
HgaI GACGC 1 cut(s) 629
HhaI GCGC 3 cut(s) 657, 715, 717
Hin1I GRCGYC 1 cut(s) 655
Hin1II CATG 8 cut(s) 110, 122, 339, 422, 455, 712, 724, 735
Hin6I GCGC 3 cut(s) 655, 713, 715
HinP1I GCGC 3 cut(s) 655, 713, 715
HincII GTYRAC 1 cut(s) 726
HindII GTYRAC 1 cut(s) 726
HinfI GANTC 5 cut(s) 5, 177, 212, 400, 598
HpaII CCGG 3 cut(s) 11, 49, 736
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 2 cut(s) 328, 726
Hpy188I TCNGA 5 cut(s) 68, 88, 173, 479, 663
Hpy188III TCNNGA 3 cut(s) 107, 203, 288
Hpy8I GTNNAC 2 cut(s) 328, 726
Hpy99I CGWCG 6 cut(s) 606, 609, 623, 626, 645, 691
HpyAV CCTTC 3 cut(s) 160, 354, 689
HpyCH4III ACNGT 2 cut(s) 619, 687
HpyCH4V TGCA 1 cut(s) 395
HpyF10VI GCNNNNNNNGC 1 cut(s) 714
HpyF3I CTNAG 2 cut(s) 247, 468
Hsp92I GRCGYC 1 cut(s) 655
Hsp92II CATG 8 cut(s) 110, 122, 339, 422, 455, 712, 724, 735
HspAI GCGC 3 cut(s) 655, 713, 715
KasI GGCGCC 1 cut(s) 654
KroI GCCGGC 1 cut(s) 735
KroNI GCCGGC 1 cut(s) 737
Kzo9I GATC 1 cut(s) 669
LmnI GCTCC 3 cut(s) 373, 430, 455
LpnPI CCDG 5 cut(s) 24, 62, 124, 318, 384
Lsp1109I GCAGC 4 cut(s) 16, 87, 717, 729
LweI GCATC 1 cut(s) 23
MaeIII GTNAC 1 cut(s) 493
MalI GATC 1 cut(s) 671
MboI GATC 1 cut(s) 669
MboII GAAGA 6 cut(s) 12, 67, 70, 402, 587, 679
MfeI CAATTG 1 cut(s) 386
MhlI GDGCHC 3 cut(s) 370, 460, 702
Mly113I GGCGCC 1 cut(s) 655
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 6 cut(s) 45, 167, 199, 202, 265, 625
MroNI GCCGGC 1 cut(s) 735
MroXI GAANNNNTTC 1 cut(s) 62
MseI TTAA 4 cut(s) 92, 162, 186, 354
MslI CAYNNNNRTG 1 cut(s) 105
MspI CCGG 3 cut(s) 11, 49, 736
MunI CAATTG 1 cut(s) 386
Mva1269I GAATGC 2 cut(s) 235, 397
MvnI CGCG 1 cut(s) 715
MwoI GCNNNNNNNGC 1 cut(s) 714
NaeI GCCGGC 1 cut(s) 737
NarI GGCGCC 1 cut(s) 655
NdeII GATC 1 cut(s) 669
NgoMIV GCCGGC 1 cut(s) 735
NlaIII CATG 8 cut(s) 110, 122, 339, 422, 455, 712, 724, 735
NlaIV GGNNCC 2 cut(s) 656, 684
NmeAIII GCCGAG 1 cut(s) 681
NspI RCATGY 4 cut(s) 339, 422, 724, 735
PaeI GCATGC 2 cut(s) 422, 735
PagI TCATGA 1 cut(s) 106
PauI GCGCGC 1 cut(s) 713
PciI ACATGT 1 cut(s) 335
PctI GAATGC 2 cut(s) 235, 397
PdiI GCCGGC 1 cut(s) 737
PdmI GAANNNNTTC 1 cut(s) 62
PfeI GAWTC 4 cut(s) 177, 212, 400, 598
PkrI GCNGC 7 cut(s) 31, 34, 74, 77, 707, 719, 741
PleI GAGTC 1 cut(s) 13
PluTI GGCGCC 1 cut(s) 658
PpsI GAGTC 1 cut(s) 13
PscI ACATGT 1 cut(s) 335
Psp124BI GAGCTC 1 cut(s) 460
PspN4I GGNNCC 2 cut(s) 656, 684
PteI GCGCGC 1 cut(s) 713
RseI CAYNNNNRTG 1 cut(s) 105
SacI GAGCTC 1 cut(s) 460
SalI GTCGAC 1 cut(s) 724
SaqAI TTAA 4 cut(s) 92, 162, 186, 354
SatI GCNGC 7 cut(s) 30, 33, 73, 76, 706, 718, 740
Sau3AI GATC 1 cut(s) 669
SchI GAGTC 1 cut(s) 14
SduI GDGCHC 3 cut(s) 370, 460, 702
SfaNI GCATC 1 cut(s) 23
SfoI GGCGCC 1 cut(s) 656
SmiMI CAYNNNNRTG 1 cut(s) 105
SphI GCATGC 2 cut(s) 422, 735
SsiI CCGC 3 cut(s) 32, 35, 72
SspDI GGCGCC 1 cut(s) 654
SstI GAGCTC 1 cut(s) 460
StyI CCWWGG 1 cut(s) 508
TaaI ACNGT 2 cut(s) 619, 687
TaqI TCGA 6 cut(s) 287, 569, 601, 624, 672, 725
TauI GCSGC 2 cut(s) 35, 75
TfiI GAWTC 4 cut(s) 177, 212, 400, 598
Tru1I TTAA 4 cut(s) 92, 162, 186, 354
Tru9I TTAA 4 cut(s) 92, 162, 186, 354
TscAI CASTG 1 cut(s) 493
TseI GCWGC 5 cut(s) 29, 75, 705, 717, 739
TspDTI ATGAA 6 cut(s) 95, 107, 147, 273, 536, 680
TspGWI ACGGA 1 cut(s) 115
TspRI CASTG 1 cut(s) 493
XapI RAATTY 2 cut(s) 61, 472
XceI RCATGY 4 cut(s) 339, 422, 724, 735
XmiI GTMKAC 1 cut(s) 725
XmnI GAANNNNTTC 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.