Rw5G030730

protein FAR1-RELATED SEQUENCE

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
48922709 .. 48929366
6658 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G030730.1

Sequence Viewer

Length: 1173 bp
ATGAGTAGAGAAGTAGGAGGGCCAGAGAATCTTGAATTTTCACATAAGGATTACATGAATTACATATATAGAAAGCGAATTTCTAAAATGGAAAAGGGAGATGCATGTGCTACATTACAGTGCTTTCAAAAGATGCAATTCGAGAATTCGTTATATTTTTATTCAATCCAACTTGATGAGGATGATATGATCACCAATATATTTTGGGCTGGTGCTCGATCAGTAAATGATTATAGGCTTTTTAGAGATGTGCTTTGTTTTGATACGACGTACAGAACAAATGAATATGGTCAACCCTTTGCACCGTTTGTTGGGGTTAATCATCATAAGAAAACAACACTACTTGGTGCAACTTTGATATATGATGAAACAACAGAGTCTTTTAGGCGGGTATTTGAGACATTCCTCTCTGCTATGTCTGGTAAGCAACCACTGACTATTTTTACTGATCAGTTTAATCTAAGTCATGTCTTTCATGGATCTTCAGAATTTGTTGATGATTTTAGAGATTGTATGTATGACTATGAGTTTGAGCATAAGTGGCTATTAGCTTCCACATGCTACTCATCGCTTATGTGTTTGGCATCTTTATCAAAATTAAAACAGTGGCCGAATAATTTATTTGAATTACATACTTTCACTGCGGATATGAAAAGCACACAACGAAGTGAATGCATGAATAATGTGCTTAAGAAATATTTGAAGCCCGAGCATAATCTTTTGCGTGCACATATGCTGCAACATGCAGCAGAGGTCTATACTCCAGAGGTTTTCTTCCTATTTCAAAAAGAATTTGTGAGAATTCATAATTATAGTACTTACAAGATTGATTCAGCACAAAATGTTAATTGTAGTTGTAAAAAGTTTACTTTTGTTGGGATTTTTTGTGTTCACGTACTAAAAGTGCTTGACAAGAAGAATACGAAGAAGATTCCACAACAATACATTTTAAATGACGGTAATCCTAAGGAGTCGATCGGCAAACTGTATGGCTACTTGTGCCTCACTTCACGTGTTATTTTAATTGTTGCAGCAGATGATGAAGAGTTAACAAGATATGCACATGAACGTTTGGTTAAGATGCTCAAAGGTTTGGAGCTAATAAAGAAAAATCACAATGAGAAAGAGGGGACAAGTGATAGGACCCGCTCCAAATTTTACCCTGAAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

390

Amino Acids

45.79

Weight (kDa)

7.92

Isoelectric Point (pI)

40.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZSWIM1-3_RNaseH-like PF21056 52 - 140 2.9e-07 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 84 - 151 1.9e-17 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1149
AciI CCGC 3 cut(s) 388, 644, 1147
AclI AACGTT 1 cut(s) 1069
AclWI GGATC 1 cut(s) 487
AcoI YGGCCR 1 cut(s) 608
AcsI RAATTY 7 cut(s) 35, 78, 145, 488, 791, 801, 1154
AcuI CTGAAG 1 cut(s) 468
AcvI CACGTG 1 cut(s) 1013
AfaI GTAC 3 cut(s) 272, 817, 897
AfiI CCNNNNNNNGG 1 cut(s) 311
AflII CTTAAG 1 cut(s) 689
AflIII ACRYGT 1 cut(s) 1012
AgsI TTSAA 6 cut(s) 35, 128, 165, 626, 703, 785
AluBI AGCT 2 cut(s) 551, 1099
AluI AGCT 2 cut(s) 551, 1099
Alw21I GWGCWC 2 cut(s) 217, 730
Alw26I GTCTC 1 cut(s) 392
Alw44I GTGCAC 1 cut(s) 726
AlwI GGATC 1 cut(s) 487
Ama87I CYCGRG 1 cut(s) 707
AoxI GGCC 2 cut(s) 20, 608
ApaLI GTGCAC 1 cut(s) 726
ApeKI GCWGC 3 cut(s) 736, 746, 1031
ApoI RAATTY 7 cut(s) 35, 78, 145, 488, 791, 801, 1154
ArsI GACNNNNNNTTYG 2 cut(s) 512, 544
AspS9I GGNCC 2 cut(s) 20, 1143
AsuHPI GGTGA 1 cut(s) 184
AvaI CYCGRG 1 cut(s) 707
AvaII GGWCC 1 cut(s) 1143
AxyI CCTNAGG 1 cut(s) 966
BaeGI GKGCMC 1 cut(s) 730
BbrPI CACGTG 1 cut(s) 1013
Bbv12I GWGCWC 2 cut(s) 217, 730
BbvI GCAGC 3 cut(s) 723, 758, 1043
BcgI CGANNNNNNTGC 2 cut(s) 654, 688
BclI TGATCA 2 cut(s) 189, 448
BcoDI GTCTC 1 cut(s) 392
BfrI CTTAAG 1 cut(s) 689
BisI GCNGC 3 cut(s) 737, 747, 1032
BlsI GCNGC 3 cut(s) 738, 748, 1033
BmcAI AGTACT 1 cut(s) 817
Bme18I GGWCC 1 cut(s) 1143
BmeT110I CYCGRG 1 cut(s) 707
BmgT120I GGNCC 2 cut(s) 20, 1143
BmiI GGNNCC 1 cut(s) 1145
BmsI GCATC 4 cut(s) 91, 123, 593, 1071
BpmI CTGGAG 1 cut(s) 747
BsaAI YACGTR 2 cut(s) 895, 1013
Bsc4I CCNNNNNNNGG 1 cut(s) 311
Bse21I CCTNAGG 1 cut(s) 966
BseGI GGATG 1 cut(s) 187
BseLI CCNNNNNNNGG 1 cut(s) 311
BseSI GKGCMC 1 cut(s) 730
BseXI GCAGC 3 cut(s) 723, 758, 1043
Bsh1285I CGRYCG 1 cut(s) 978
BshFI GGCC 2 cut(s) 22, 610
BsiEI CGRYCG 1 cut(s) 978
BsiHKAI GWGCWC 2 cut(s) 217, 730
BsiHKCI CYCGRG 1 cut(s) 707
BslFI GGGAC 1 cut(s) 1144
BslI CCNNNNNNNGG 1 cut(s) 311
BsmAI GTCTC 1 cut(s) 392
BsmFI GGGAC 1 cut(s) 1144
BsmI GAATGC 1 cut(s) 677
BsnI GGCC 2 cut(s) 22, 610
BsoBI CYCGRG 1 cut(s) 707
Bsp1286I GDGCHC 2 cut(s) 217, 730
Bsp143I GATC 5 cut(s) 189, 218, 448, 479, 975
BspACI CCGC 3 cut(s) 388, 644, 1147
BspANI GGCC 2 cut(s) 22, 610
BspLI GGNNCC 1 cut(s) 1145
BspPI GGATC 1 cut(s) 487
BspTI CTTAAG 1 cut(s) 689
BsrBI CCGCTC 1 cut(s) 1149
BssMI GATC 5 cut(s) 189, 218, 448, 479, 975
Bst4CI ACNGT 5 cut(s) 120, 306, 606, 959, 987
Bst6I CTCTTC 1 cut(s) 1038
BstAFI CTTAAG 1 cut(s) 689
BstBAI YACGTR 2 cut(s) 895, 1013
BstC8I GCNNGC 1 cut(s) 726
BstDEI CTNAG 2 cut(s) 461, 966
BstF5I GGATG 1 cut(s) 187
BstKTI GATC 5 cut(s) 192, 221, 451, 482, 978
BstMAI GTCTC 1 cut(s) 392
BstMBI GATC 5 cut(s) 189, 218, 448, 479, 975
BstMCI CGRYCG 1 cut(s) 978
BstMWI GCNNNNNNNGC 2 cut(s) 541, 999
BstNSI RCATGY 3 cut(s) 108, 561, 746
BstSLI GKGCMC 1 cut(s) 730
BstV1I GCAGC 3 cut(s) 723, 758, 1043
BstX2I RGATCY 1 cut(s) 479
BstYI RGATCY 1 cut(s) 479
Bsu36I CCTNAGG 1 cut(s) 966
BsuRI GGCC 2 cut(s) 22, 610
BtgZI GCGATG 1 cut(s) 552
BtsCI GGATG 1 cut(s) 187
BtsI GCAGTG 1 cut(s) 639
BtsIMutI CAGTG 4 cut(s) 125, 431, 611, 639
Cac8I GCNNGC 1 cut(s) 726
Cfr13I GGNCC 2 cut(s) 20, 1143
Csp6I GTAC 3 cut(s) 271, 816, 896
CviAII CATG 8 cut(s) 55, 105, 467, 476, 558, 676, 743, 1064
CviJI RGCY 9 cut(s) 22, 209, 238, 544, 551, 610, 706, 993, 1099
CviKI_1 RGCY 9 cut(s) 22, 209, 238, 544, 551, 610, 706, 993, 1099
CviQI GTAC 3 cut(s) 271, 816, 896
DdeI CTNAG 2 cut(s) 461, 966
DpnI GATC 5 cut(s) 191, 220, 450, 481, 977
DpnII GATC 5 cut(s) 189, 218, 448, 479, 975
DraI TTTAAA 1 cut(s) 951
EaeI YGGCCR 1 cut(s) 608
Eam1104I CTCTTC 1 cut(s) 1038
EarI CTCTTC 1 cut(s) 1038
Eco47I GGWCC 1 cut(s) 1143
Eco57I CTGAAG 1 cut(s) 468
Eco72I CACGTG 1 cut(s) 1013
Eco81I CCTNAGG 1 cut(s) 966
Eco88I CYCGRG 1 cut(s) 707
EcoO109I RGGNCCY 1 cut(s) 1143
EcoRI GAATTC 2 cut(s) 145, 801
EcoT22I ATGCAT 2 cut(s) 106, 677
FaeI CATG 8 cut(s) 58, 108, 470, 479, 561, 679, 746, 1067
FaqI GGGAC 1 cut(s) 1144
FatI CATG 8 cut(s) 54, 104, 466, 475, 557, 675, 742, 1063
FauI CCCGC 2 cut(s) 381, 1154
FauNDI CATATG 1 cut(s) 732
FbaI TGATCA 2 cut(s) 189, 448
Fnu4HI GCNGC 3 cut(s) 737, 747, 1032
FokI GGATG 1 cut(s) 194
Fsp4HI GCNGC 3 cut(s) 737, 747, 1032
GluI GCNGC 3 cut(s) 737, 747, 1032
GsuI CTGGAG 1 cut(s) 747
HaeIII GGCC 2 cut(s) 22, 610
Hin1II CATG 8 cut(s) 58, 108, 470, 479, 561, 679, 746, 1067
HincII GTYRAC 2 cut(s) 293, 1050
HindII GTYRAC 2 cut(s) 293, 1050
HinfI GANTC 5 cut(s) 28, 377, 830, 931, 971
HpaI GTTAAC 1 cut(s) 1050
HphI GGTGA 1 cut(s) 184
Hpy166II GTNNAC 5 cut(s) 293, 728, 867, 892, 1050
Hpy188I TCNGA 2 cut(s) 487, 1172
Hpy188III TCNNGA 3 cut(s) 32, 142, 764
Hpy8I GTNNAC 5 cut(s) 293, 728, 867, 892, 1050
Hpy99I CGWCG 1 cut(s) 271
HpyCH4III ACNGT 5 cut(s) 120, 306, 606, 959, 987
HpyCH4IV ACGT 4 cut(s) 269, 894, 1012, 1069
HpyF10VI GCNNNNNNNGC 2 cut(s) 541, 999
HpyF3I CTNAG 2 cut(s) 461, 966
HpySE526I ACGT 4 cut(s) 269, 894, 1012, 1069
Hsp92II CATG 8 cut(s) 58, 108, 470, 479, 561, 679, 746, 1067
Ksp22I TGATCA 2 cut(s) 189, 448
KspAI GTTAAC 1 cut(s) 1050
Kzo9I GATC 5 cut(s) 189, 218, 448, 479, 975
LmnI GCTCC 2 cut(s) 1096, 1154
LpnPI CCDG 4 cut(s) 36, 195, 405, 777
Lsp1109I GCAGC 3 cut(s) 723, 758, 1043
LweI GCATC 4 cut(s) 91, 123, 593, 1071
MaeII ACGT 4 cut(s) 269, 894, 1012, 1069
MalI GATC 5 cut(s) 191, 220, 450, 481, 977
MbiI CCGCTC 1 cut(s) 1149
MboI GATC 5 cut(s) 189, 218, 448, 479, 975
MboII GAAGA 6 cut(s) 474, 766, 928, 937, 940, 1055
MflI RGATCY 1 cut(s) 479
MhlI GDGCHC 2 cut(s) 217, 730
MlyI GAGTC 2 cut(s) 386, 980
MmeI TCCRAC 1 cut(s) 193
MnlI CCTC 7 cut(s) 11, 172, 416, 745, 760, 1013, 1120
Mph1103I ATGCAT 2 cut(s) 106, 677
MseI TTAA 9 cut(s) 318, 456, 599, 690, 846, 950, 1022, 1049, 1077
MslI CAYNNNNRTG 1 cut(s) 118
MspCI CTTAAG 1 cut(s) 689
Mva1269I GAATGC 1 cut(s) 677
MwoI GCNNNNNNNGC 2 cut(s) 541, 999
NdeI CATATG 1 cut(s) 732
NdeII GATC 5 cut(s) 189, 218, 448, 479, 975
NlaIII CATG 8 cut(s) 58, 108, 470, 479, 561, 679, 746, 1067
NlaIV GGNNCC 1 cut(s) 1145
NsiI ATGCAT 2 cut(s) 106, 677
NspI RCATGY 3 cut(s) 108, 561, 746
PctI GAATGC 1 cut(s) 677
PfeI GAWTC 3 cut(s) 28, 830, 931
PkrI GCNGC 3 cut(s) 738, 748, 1033
Ple19I CGATCG 1 cut(s) 978
PleI GAGTC 2 cut(s) 385, 979
PmaCI CACGTG 1 cut(s) 1013
PmlI CACGTG 1 cut(s) 1013
PpsI GAGTC 2 cut(s) 385, 979
Ppu21I YACGTR 2 cut(s) 895, 1013
PpuMI RGGWCCY 1 cut(s) 1143
Psp1406I AACGTT 1 cut(s) 1069
Psp5II RGGWCCY 1 cut(s) 1143
PspCI CACGTG 1 cut(s) 1013
PspN4I GGNNCC 1 cut(s) 1145
PspPI GGNCC 2 cut(s) 20, 1143
PspPPI RGGWCCY 1 cut(s) 1143
PsuI RGATCY 1 cut(s) 479
PvuI CGATCG 1 cut(s) 978
RsaI GTAC 3 cut(s) 272, 817, 897
RsaNI GTAC 3 cut(s) 271, 816, 896
RseI CAYNNNNRTG 1 cut(s) 118
SaqAI TTAA 9 cut(s) 318, 456, 599, 690, 846, 950, 1022, 1049, 1077
SatI GCNGC 3 cut(s) 737, 747, 1032
Sau3AI GATC 5 cut(s) 189, 218, 448, 479, 975
Sau96I GGNCC 2 cut(s) 20, 1143
ScaI AGTACT 1 cut(s) 817
SchI GAGTC 2 cut(s) 386, 980
SduI GDGCHC 2 cut(s) 217, 730
SetI ASST 9 cut(s) 272, 553, 756, 771, 897, 1015, 1072, 1093, 1101
SfaNI GCATC 4 cut(s) 91, 123, 593, 1071
SinI GGWCC 1 cut(s) 1143
SmiMI CAYNNNNRTG 1 cut(s) 118
SmlI CTYRAG 1 cut(s) 689
SmoI CTYRAG 1 cut(s) 689
SsiI CCGC 3 cut(s) 388, 644, 1147
SspI AATATT 1 cut(s) 698
TaaI ACNGT 5 cut(s) 120, 306, 606, 959, 987
TaiI ACGT 4 cut(s) 272, 897, 1015, 1072
TaqI TCGA 3 cut(s) 141, 217, 974
TatI WGTACW 1 cut(s) 815
TfiI GAWTC 3 cut(s) 28, 830, 931
Tru1I TTAA 9 cut(s) 318, 456, 599, 690, 846, 950, 1022, 1049, 1077
Tru9I TTAA 9 cut(s) 318, 456, 599, 690, 846, 950, 1022, 1049, 1077
TscAI CASTG 4 cut(s) 125, 438, 611, 646
TseI GCWGC 3 cut(s) 736, 746, 1031
TspDTI ATGAA 9 cut(s) 71, 297, 381, 464, 665, 692, 794, 1056, 1080
TspRI CASTG 4 cut(s) 125, 438, 611, 646
Vha464I CTTAAG 1 cut(s) 689
VneI GTGCAC 1 cut(s) 726
VpaK11BI GGWCC 1 cut(s) 1143
XapI RAATTY 7 cut(s) 35, 78, 145, 488, 791, 801, 1154
XceI RCATGY 3 cut(s) 108, 561, 746
ZrmI AGTACT 1 cut(s) 817
Zsp2I ATGCAT 2 cut(s) 106, 677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.