Rh6DG284900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000325
Physical Location & Seq
Forward (+)
47971045 .. 47974100
3056 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG284900.1

Sequence Viewer

Length: 279 bp
ATGGAGAATGGCCAGATAGCTGAGCTTGTTGTGGATTGTCGCCGCCTTCCTCTGCGCCATCTTCTTCAGGTTGTCGTGGATCCTCGCCGGGCCTTCCCCTGCGCCTTCTTCTTCAGCTCGTCGCTGGTGATCTCCTTCAATTCATGGATTCTCGTCACTGAAAGGGATCAGATATCAAAGATTCAGCGCAACATACAGGGAATTTCTGTCACTGCAATGGGAACATATAACCTGAAGGATTCATGGTGGTCCAGAATGAGGAGATCTAATTCCCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.7

Weight (kDa)

10.26

Isoelectric Point (pI)

50.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 43
AclWI GGATC 3 cut(s) 74, 87, 174
AcoI YGGCCR 1 cut(s) 10
AcsI RAATTY 1 cut(s) 201
AcuI CTGAAG 3 cut(s) 50, 97, 254
AfiI CCNNNNNNNGG 1 cut(s) 258
AgsI TTSAA 1 cut(s) 139
AluBI AGCT 3 cut(s) 20, 25, 117
AluI AGCT 3 cut(s) 20, 25, 117
AlwI GGATC 3 cut(s) 74, 87, 174
AoxI GGCC 2 cut(s) 10, 90
ApoI RAATTY 1 cut(s) 201
AspLEI GCGC 3 cut(s) 57, 104, 189
AspS9I GGNCC 2 cut(s) 90, 249
AsuC2I CCSGG 1 cut(s) 89
AsuHPI GGTGA 1 cut(s) 139
AvaII GGWCC 1 cut(s) 249
BalI TGGCCA 1 cut(s) 12
BamHI GGATCC 1 cut(s) 79
BccI CCATC 1 cut(s) 66
BcnI CCSGG 1 cut(s) 89
BglII AGATCT 1 cut(s) 263
BisI GCNGC 1 cut(s) 43
BlpI GCTNAGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 44
Bme1390I CCNGG 1 cut(s) 89
Bme18I GGWCC 1 cut(s) 249
BmgT120I GGNCC 2 cut(s) 90, 249
BmiI GGNNCC 1 cut(s) 81
BmrFI CCNGG 1 cut(s) 89
Bpu1102I GCTNAGC 1 cut(s) 21
BpuMI CCSGG 1 cut(s) 89
Bsc4I CCNNNNNNNGG 1 cut(s) 258
Bse3DI GCAATG 1 cut(s) 222
BseLI CCNNNNNNNGG 1 cut(s) 258
BseMI GCAATG 1 cut(s) 222
BseMII CTCAG 1 cut(s) 12
BseRI GAGGAG 1 cut(s) 274
BshFI GGCC 2 cut(s) 12, 92
BsiSI CCGG 1 cut(s) 88
BslI CCNNNNNNNGG 1 cut(s) 258
BsnI GGCC 2 cut(s) 12, 92
Bsp143I GATC 4 cut(s) 79, 129, 166, 263
Bsp1720I GCTNAGC 1 cut(s) 21
BspACI CCGC 1 cut(s) 43
BspANI GGCC 2 cut(s) 12, 92
BspCNI CTCAG 1 cut(s) 13
BspLI GGNNCC 1 cut(s) 81
BspPI GGATC 3 cut(s) 74, 87, 174
BsrDI GCAATG 1 cut(s) 222
BssMI GATC 4 cut(s) 79, 129, 166, 263
BstDEI CTNAG 1 cut(s) 21
BstHHI GCGC 3 cut(s) 57, 104, 189
BstKTI GATC 4 cut(s) 82, 132, 169, 266
BstMBI GATC 4 cut(s) 79, 129, 166, 263
BstSCI CCNGG 1 cut(s) 87
BstX2I RGATCY 2 cut(s) 79, 263
BstYI RGATCY 2 cut(s) 79, 263
BsuRI GGCC 2 cut(s) 12, 92
BtsI GCAGTG 1 cut(s) 210
BtsIMutI CAGTG 2 cut(s) 156, 210
CfoI GCGC 3 cut(s) 57, 104, 189
Cfr13I GGNCC 2 cut(s) 90, 249
CviAII CATG 2 cut(s) 144, 243
CviJI RGCY 5 cut(s) 12, 20, 25, 92, 117
CviKI_1 RGCY 5 cut(s) 12, 20, 25, 92, 117
DdeI CTNAG 1 cut(s) 21
DpnI GATC 4 cut(s) 81, 131, 168, 265
DpnII GATC 4 cut(s) 79, 129, 166, 263
EaeI YGGCCR 1 cut(s) 10
Eco32I GATATC 1 cut(s) 174
Eco47I GGWCC 1 cut(s) 249
Eco57I CTGAAG 3 cut(s) 50, 97, 254
EcoRV GATATC 1 cut(s) 174
FaeI CATG 2 cut(s) 147, 246
FaiI YATR 5 cut(s) 145, 194, 226, 228, 244
FatI CATG 2 cut(s) 143, 242
Fnu4HI GCNGC 1 cut(s) 43
Fsp4HI GCNGC 1 cut(s) 43
GlaI GCGC 3 cut(s) 56, 103, 188
GluI GCNGC 1 cut(s) 43
HaeIII GGCC 2 cut(s) 12, 92
HapII CCGG 1 cut(s) 88
HhaI GCGC 3 cut(s) 57, 104, 189
Hin1II CATG 2 cut(s) 147, 246
Hin6I GCGC 3 cut(s) 55, 102, 187
HinP1I GCGC 3 cut(s) 55, 102, 187
HinfI GANTC 3 cut(s) 148, 181, 239
HpaII CCGG 1 cut(s) 88
HphI GGTGA 1 cut(s) 139
Hpy188I TCNGA 1 cut(s) 171
Hpy188III TCNNGA 1 cut(s) 252
Hpy99I CGWCG 1 cut(s) 124
HpyAV CCTTC 5 cut(s) 56, 103, 115, 145, 229
HpyCH4V TGCA 1 cut(s) 215
HpyF3I CTNAG 1 cut(s) 21
Hsp92II CATG 2 cut(s) 147, 246
HspAI GCGC 3 cut(s) 55, 102, 187
Kzo9I GATC 4 cut(s) 79, 129, 166, 263
LpnPI CCDG 8 cut(s) 26, 53, 101, 110, 112, 182, 245, 265
MaeIII GTNAC 2 cut(s) 154, 208
MalI GATC 4 cut(s) 81, 131, 168, 265
MboI GATC 4 cut(s) 79, 129, 166, 263
MboII GAAGA 4 cut(s) 53, 56, 100, 103
MflI RGATCY 2 cut(s) 79, 263
MlsI TGGCCA 1 cut(s) 12
MluCI AATT 3 cut(s) 139, 201, 268
MluNI TGGCCA 1 cut(s) 12
MnlI CCTC 3 cut(s) 60, 93, 252
Mox20I TGGCCA 1 cut(s) 12
MscI TGGCCA 1 cut(s) 12
MseI TTAA 1 cut(s) 277
MslI CAYNNNNRTG 1 cut(s) 215
Msp20I TGGCCA 1 cut(s) 12
MspI CCGG 1 cut(s) 88
MspR9I CCNGG 1 cut(s) 89
NciI CCSGG 1 cut(s) 89
NdeII GATC 4 cut(s) 79, 129, 166, 263
NlaIII CATG 2 cut(s) 147, 246
NlaIV GGNNCC 1 cut(s) 81
NmuCI GTSAC 2 cut(s) 154, 208
PfeI GAWTC 3 cut(s) 148, 181, 239
PkrI GCNGC 1 cut(s) 44
PspN4I GGNNCC 1 cut(s) 81
PspPI GGNCC 2 cut(s) 90, 249
PsuI RGATCY 2 cut(s) 79, 263
RseI CAYNNNNRTG 1 cut(s) 215
SaqAI TTAA 1 cut(s) 277
SatI GCNGC 1 cut(s) 43
Sau3AI GATC 4 cut(s) 79, 129, 166, 263
Sau96I GGNCC 2 cut(s) 90, 249
ScrFI CCNGG 1 cut(s) 89
SetI ASST 5 cut(s) 22, 27, 72, 119, 234
SinI GGWCC 1 cut(s) 249
SmiMI CAYNNNNRTG 1 cut(s) 215
Sse9I AATT 3 cut(s) 139, 201, 268
SsiI CCGC 1 cut(s) 43
StyD4I CCNGG 1 cut(s) 87
TasI AATT 3 cut(s) 139, 201, 268
TauI GCSGC 1 cut(s) 45
TfiI GAWTC 3 cut(s) 148, 181, 239
Tru1I TTAA 1 cut(s) 277
Tru9I TTAA 1 cut(s) 277
TscAI CASTG 2 cut(s) 163, 217
TseFI GTSAC 2 cut(s) 154, 208
Tsp45I GTSAC 2 cut(s) 154, 208
TspDTI ATGAA 2 cut(s) 132, 231
TspRI CASTG 2 cut(s) 163, 217
VpaK11BI GGWCC 1 cut(s) 249
XapI RAATTY 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.