Rh2BG439100

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000325
Physical Location & Seq
Forward (+)
62155022 .. 62163479
8458 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG439100.1

Sequence Viewer

Length: 825 bp
ATGGCCTTGTTCTTTGTTACAAAGAATACAGAATGTATAAGTAATGAGTTATTAAGTGGTAGTGAAGTTGCTTTTCCAGATGAGAATGAATTCAGTTTGCAATGTAATGATGAGTTCAGTTTGCTGGGTGAGAGTGAAATCGATTTGCAAGGTGAGGAAGAAGATGATTTAGTAAGTGAAGATGAAGTTGATGTGCAACCTGAGGAGACTTTTCAATCAAGAAGTAATGATTCTTTTTTAAACTCAAATGAAGACAAAGAGAAGAAAGAAGAACTATATATCGGAATGGAGTTTAGTTCCGATGAGAGTGCATATAGAGCTTATGCTAAATATGGAGGAAAATCTGGTTTCAATGTGAGGAAACAACGCAGGACAAGAAACAAGAAGGGTTTGGTTGTTAGGTATGCAAATGAATATGCCATTGAGTTGCTTAAAAATTTGGAAGAAAAGAAGAAGAAATTGTTGAAAGAAGATGCATGGGTGATTCAAACATCAGATGTTGGAGCTTTAGAAGGTGAAGTATCAAATGCACGTGGAGTTAAAAGAAAAGCTACTGTTGGACGACCACGCGGTCGTCATGGTAGATTTAAAGGTGTTCTTGAAGGGAAGAGTTGTAAAGCCACATCTAAAGCATCAACATCTCTAGCAAGTAAAGCCGCAGCAAAGAAACAACTATCCTTCCAGGACTCTATTCCTACTAGTGACAATTGCGAGCAACAAGAAGTCAATGAATATGAAGTTCTAATGCTTGATTCAGCAACTCAAGAGTCCAATCTTAGTGCTGGTACCCAAGTATCAGTTTATGGCACAGGTCTAACTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

274

Amino Acids

30.5

Weight (kDa)

4.89

Isoelectric Point (pI)

42.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 570
Acc65I GGTACC 1 cut(s) 785
AccB1I GGYRCC 1 cut(s) 785
AccII CGCG 1 cut(s) 570
AciI CCGC 2 cut(s) 570, 657
AcsI RAATTY 2 cut(s) 89, 436
AcvI CACGTG 1 cut(s) 533
AfaI GTAC 1 cut(s) 787
AgsI TTSAA 5 cut(s) 215, 352, 466, 488, 602
AhlI ACTAGT 1 cut(s) 698
AjnI CCWGG 1 cut(s) 681
AluBI AGCT 3 cut(s) 320, 506, 551
AluI AGCT 3 cut(s) 320, 506, 551
Alw26I GTCTC 1 cut(s) 200
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 659
ApoI RAATTY 2 cut(s) 89, 436
Asp700I GAANNNNTTC 1 cut(s) 89
Asp718I GGTACC 1 cut(s) 785
AsuHPI GGTGA 4 cut(s) 140, 164, 493, 527
AxyI CCTNAGG 1 cut(s) 201
BaeI ACNNNNGTAYC 4 cut(s) 777, 777, 810, 810
BanI GGYRCC 1 cut(s) 785
BbrPI CACGTG 1 cut(s) 533
BbsI GAAGAC 1 cut(s) 258
BbvI GCAGC 1 cut(s) 671
BcgI CGANNNNNNTGC 2 cut(s) 290, 324
BciT130I CCWGG 1 cut(s) 683
BcoDI GTCTC 1 cut(s) 200
BcuI ACTAGT 1 cut(s) 698
BfaI CTAG 2 cut(s) 644, 699
BisI GCNGC 2 cut(s) 657, 660
BlsI GCNGC 2 cut(s) 658, 661
Bme1390I CCNGG 1 cut(s) 683
BmiI GGNNCC 1 cut(s) 787
BmrFI CCNGG 1 cut(s) 683
BmsI GCATC 2 cut(s) 463, 641
BpiI GAAGAC 1 cut(s) 258
BpuEI CTTGAG 1 cut(s) 747
Bsa29I ATCGAT 1 cut(s) 141
BsaAI YACGTR 1 cut(s) 533
Bse21I CCTNAGG 1 cut(s) 201
Bse3DI GCAATG 1 cut(s) 107
BseBI CCWGG 1 cut(s) 683
BseCI ATCGAT 1 cut(s) 141
BseMI GCAATG 1 cut(s) 107
BseMII CTCAG 1 cut(s) 192
BseRI GAGGAG 1 cut(s) 218
BseXI GCAGC 1 cut(s) 671
BseYI CCCAGC 1 cut(s) 124
Bsh1236I CGCG 1 cut(s) 570
Bsh1285I CGRYCG 1 cut(s) 574
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 785
BshVI ATCGAT 1 cut(s) 141
BsiEI CGRYCG 1 cut(s) 574
BsmAI GTCTC 1 cut(s) 200
BsnI GGCC 1 cut(s) 5
BspACI CCGC 2 cut(s) 570, 657
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 193
BspDI ATCGAT 1 cut(s) 141
BspFNI CGCG 1 cut(s) 570
BspLI GGNNCC 1 cut(s) 787
BspT107I GGYRCC 1 cut(s) 785
BsrDI GCAATG 1 cut(s) 107
Bst2UI CCWGG 1 cut(s) 683
Bst4CI ACNGT 1 cut(s) 556
Bst6I CTCTTC 1 cut(s) 602
BstBAI YACGTR 1 cut(s) 533
BstC8I GCNNGC 1 cut(s) 713
BstDEI CTNAG 2 cut(s) 201, 776
BstFNI CGCG 1 cut(s) 570
BstMAI GTCTC 1 cut(s) 200
BstMCI CGRYCG 1 cut(s) 574
BstMWI GCNNNNNNNGC 2 cut(s) 317, 653
BstNI CCWGG 1 cut(s) 683
BstSCI CCNGG 1 cut(s) 681
BstUI CGCG 1 cut(s) 570
BstV1I GCAGC 1 cut(s) 671
BstV2I GAAGAC 1 cut(s) 258
Bsu15I ATCGAT 1 cut(s) 141
Bsu36I CCTNAGG 1 cut(s) 201
BsuRI GGCC 1 cut(s) 5
BsuTUI ATCGAT 1 cut(s) 141
Cac8I GCNNGC 1 cut(s) 713
ClaI ATCGAT 1 cut(s) 141
Csp6I GTAC 1 cut(s) 786
CviAII CATG 2 cut(s) 477, 578
CviJI RGCY 6 cut(s) 5, 320, 506, 551, 620, 656
CviKI_1 RGCY 6 cut(s) 5, 320, 506, 551, 620, 656
CviQI GTAC 1 cut(s) 786
DdeI CTNAG 2 cut(s) 201, 776
DraI TTTAAA 2 cut(s) 240, 589
DrdI GACNNNNNNGTC 1 cut(s) 570
DseDI GACNNNNNNGTC 1 cut(s) 570
Eam1104I CTCTTC 1 cut(s) 602
EarI CTCTTC 1 cut(s) 602
Eco72I CACGTG 1 cut(s) 533
Eco81I CCTNAGG 1 cut(s) 201
EcoRI GAATTC 1 cut(s) 89
EcoRII CCWGG 1 cut(s) 681
EcoT22I ATGCAT 1 cut(s) 478
FaeI CATG 2 cut(s) 480, 581
FalI AAGNNNNNCTT 2 cut(s) 582, 614
FatI CATG 2 cut(s) 476, 577
Fnu4HI GCNGC 2 cut(s) 657, 660
Fsp4HI GCNGC 2 cut(s) 657, 660
FspBI CTAG 2 cut(s) 644, 699
GluI GCNGC 2 cut(s) 657, 660
GsaI CCCAGC 1 cut(s) 128
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 2 cut(s) 480, 581
HinfI GANTC 5 cut(s) 230, 484, 686, 752, 767
HphI GGTGA 4 cut(s) 140, 164, 493, 527
Hpy188I TCNGA 3 cut(s) 284, 301, 496
Hpy188III TCNNGA 4 cut(s) 77, 219, 599, 764
HpyAV CCTTC 4 cut(s) 379, 506, 596, 688
HpyCH4III ACNGT 1 cut(s) 556
HpyCH4IV ACGT 1 cut(s) 532
HpyCH4V TGCA 7 cut(s) 100, 148, 196, 311, 407, 476, 530
HpyF10VI GCNNNNNNNGC 2 cut(s) 317, 653
HpyF3I CTNAG 2 cut(s) 201, 776
HpySE526I ACGT 1 cut(s) 532
Hsp92II CATG 2 cut(s) 480, 581
KpnI GGTACC 1 cut(s) 789
LmnI GCTCC 1 cut(s) 503
LpnPI CCDG 9 cut(s) 90, 110, 213, 330, 355, 668, 695, 768, 795
Lsp1109I GCAGC 1 cut(s) 671
LweI GCATC 2 cut(s) 463, 641
MaeI CTAG 2 cut(s) 644, 699
MaeII ACGT 1 cut(s) 532
MaeIII GTNAC 2 cut(s) 16, 701
MfeI CAATTG 1 cut(s) 706
MluCI AATT 4 cut(s) 89, 436, 458, 706
MlyI GAGTC 2 cut(s) 680, 776
MmeI TCCRAC 2 cut(s) 481, 538
MnlI CCTC 4 cut(s) 148, 196, 329, 351
Mph1103I ATGCAT 1 cut(s) 478
MroXI GAANNNNTTC 1 cut(s) 89
MseI TTAA 5 cut(s) 53, 239, 432, 540, 588
MspR9I CCNGG 1 cut(s) 683
MunI CAATTG 1 cut(s) 706
MvaI CCWGG 1 cut(s) 683
MvnI CGCG 1 cut(s) 570
MwoI GCNNNNNNNGC 2 cut(s) 317, 653
NlaIII CATG 2 cut(s) 480, 581
NlaIV GGNNCC 1 cut(s) 787
NmuCI GTSAC 1 cut(s) 701
NsiI ATGCAT 1 cut(s) 478
PdmI GAANNNNTTC 1 cut(s) 89
PfeI GAWTC 3 cut(s) 230, 484, 752
PfoI TCCNGGA 1 cut(s) 681
PkrI GCNGC 2 cut(s) 658, 661
PleI GAGTC 2 cut(s) 680, 775
PmaCI CACGTG 1 cut(s) 533
PmlI CACGTG 1 cut(s) 533
PpsI GAGTC 2 cut(s) 680, 775
Ppu21I YACGTR 1 cut(s) 533
Psp6I CCWGG 1 cut(s) 681
PspCI CACGTG 1 cut(s) 533
PspFI CCCAGC 1 cut(s) 124
PspGI CCWGG 1 cut(s) 681
PspN4I GGNNCC 1 cut(s) 787
RsaI GTAC 1 cut(s) 787
RsaNI GTAC 1 cut(s) 786
SaqAI TTAA 5 cut(s) 53, 239, 432, 540, 588
SatI GCNGC 2 cut(s) 657, 660
SchI GAGTC 2 cut(s) 680, 776
ScrFI CCNGG 1 cut(s) 683
SfaNI GCATC 2 cut(s) 463, 641
SmlI CTYRAG 1 cut(s) 762
SmoI CTYRAG 1 cut(s) 762
SpeI ACTAGT 1 cut(s) 698
Sse9I AATT 4 cut(s) 89, 436, 458, 706
SsiI CCGC 2 cut(s) 570, 657
SspMI CTAG 2 cut(s) 644, 699
StyD4I CCNGG 1 cut(s) 681
TaaI ACNGT 1 cut(s) 556
TaiI ACGT 1 cut(s) 535
TaqI TCGA 1 cut(s) 141
TasI AATT 4 cut(s) 89, 436, 458, 706
TauI GCSGC 1 cut(s) 659
TfiI GAWTC 3 cut(s) 230, 484, 752
Tru1I TTAA 5 cut(s) 53, 239, 432, 540, 588
Tru9I TTAA 5 cut(s) 53, 239, 432, 540, 588
TseFI GTSAC 1 cut(s) 701
TseI GCWGC 1 cut(s) 659
Tsp45I GTSAC 1 cut(s) 701
TspDTI ATGAA 6 cut(s) 102, 198, 264, 426, 744, 750
XapI RAATTY 2 cut(s) 89, 436
XmnI GAANNNNTTC 1 cut(s) 89
XspI CTAG 2 cut(s) 644, 699
Zsp2I ATGCAT 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.