Rmu_sc0004808.1_g000011

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004808.1
OG0000325
Physical Location & Seq
Reverse (-)
76724 .. 80703
3980 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004808.1_g000011.1.cds

Sequence Viewer

Length: 1065 bp
atgattggaaatccgccgttcggccacgatgtagtgtggcacgggtgtcgttcggctcgtctctcctttgatgatctatttttggtattgtcttgcccaaccgacagctcaaggaggagaatcgaaactcgaaagctttgggctttccggcggtccctccgagtttttcggcaactctggtcactgttggtggtgtataagctcatggacttagaagataattgcaaagaggatgaaattcaaacaaactcacgtctaaagttggattttgaaaatggaattgacatgaacacttgtgtggaagatgaaagtctggaagaaaaggtgacagaattgggacgtgttgaagcaaggatgaaaattaagctttggaaggctagtggcaaatatcgtgttattgaatttgtttctaagcataatggccatgagacttcaagtccttctaagaactatttttttaggtctcataggagtgtaaatactgcacaaatagctgaggcagatatggcttatgattcaggaattcctcctaaggctgcgcttgaatttttgagcagacaagccgggggacttgaaagtcttggatttgtttctaaagattataacaattatttgcgattggatagcataagagaagatgtggatacatgtttgaaagaagaagccgaggaaaactctaatcaactgatttcaccaaccaccaacaatgcatcaaagcttaatgaggtggtgtgtgttgatgatcaagttaaagggattaaagttaaagagaaacttaaaggtattggttgttcaactaggcctaaaaatgctctagagaagctaaccatggcaaagatgagaagacttgaaaataaagacatgaactcttcatctgttgcttttaaaactgcatctacaatgcaatgtccttctatgacgcaaagtgtttcagcgacacaacatgcttcttctacacaacctcttctacatttttctatgcacatggtttctaatgtgcaacttaccttgcctctatcacaacctattctaccttcagcacccttattgcaactggtgttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

354

Amino Acids

40.01

Weight (kDa)

8.34

Isoelectric Point (pI)

48.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 603
AasI GACNNNNNNGTC 1 cut(s) 576
AciI CCGC 2 cut(s) 14, 151
AcoI YGGCCR 2 cut(s) 22, 421
AcsI RAATTY 4 cut(s) 237, 401, 522, 545
AcuI CTGAAG 1 cut(s) 1020
AfiI CCNNNNNNNGG 1 cut(s) 20
AflIII ACRYGT 2 cut(s) 340, 647
AhdI GACNNNNNGTC 1 cut(s) 435
AjiI CACGTC 2 cut(s) 254, 341
AleI CACNNNNGTG 1 cut(s) 296
AluBI AGCT 7 cut(s) 108, 136, 202, 367, 494, 718, 823
AluI AGCT 7 cut(s) 108, 136, 202, 367, 494, 718, 823
Alw26I GTCTC 3 cut(s) 65, 422, 468
AoxI GGCC 3 cut(s) 22, 421, 800
ApeKI GCWGC 1 cut(s) 536
ApoI RAATTY 4 cut(s) 237, 401, 522, 545
AspLEI GCGC 1 cut(s) 541
AspS9I GGNCC 1 cut(s) 153
AsuC2I CCSGG 1 cut(s) 565
AsuHPI GGTGA 2 cut(s) 337, 684
AvaII GGWCC 1 cut(s) 153
AxyI CCTNAGG 1 cut(s) 531
BalI TGGCCA 1 cut(s) 423
BbsI GAAGAC 1 cut(s) 850
BbvCI CCTCAGC 1 cut(s) 495
BbvI GCAGC 1 cut(s) 523
BcgI CGANNNNNNTGC 2 cut(s) 29, 63
BciVI GTATCC 1 cut(s) 637
BclI TGATCA 1 cut(s) 742
BcnI CCSGG 1 cut(s) 565
BcoDI GTCTC 3 cut(s) 65, 422, 468
BfaI CTAG 3 cut(s) 378, 798, 815
BfuI GTATCC 1 cut(s) 637
BisI GCNGC 1 cut(s) 537
BlsI GCNGC 1 cut(s) 538
Bme1390I CCNGG 1 cut(s) 565
Bme18I GGWCC 1 cut(s) 153
BmeRI GACNNNNNGTC 1 cut(s) 435
BmgBI CACGTC 2 cut(s) 254, 341
BmgT120I GGNCC 1 cut(s) 153
BmiI GGNNCC 1 cut(s) 155
BmrFI CCNGG 1 cut(s) 565
BmsI GCATC 2 cut(s) 719, 902
BpiI GAAGAC 1 cut(s) 850
BplI GAGNNNNNCTC 2 cut(s) 659, 691
Bpu10I CCTNAGC 1 cut(s) 495
BpuEI CTTGAG 1 cut(s) 94
BpuMI CCSGG 1 cut(s) 565
BsaI GGTCTC 1 cut(s) 468
BsaJI CCNNGG 3 cut(s) 564, 666, 828
Bsc4I CCNNNNNNNGG 1 cut(s) 20
Bse1I ACTGG 1 cut(s) 1059
Bse21I CCTNAGG 1 cut(s) 531
Bse3DI GCAATG 1 cut(s) 911
BseDI CCNNGG 3 cut(s) 564, 666, 828
BseGI GGATG 2 cut(s) 238, 360
BseLI CCNNNNNNNGG 1 cut(s) 20
BseMI GCAATG 1 cut(s) 911
BseMII CTCAG 1 cut(s) 486
BseNI ACTGG 1 cut(s) 1059
BseRI GAGGAG 1 cut(s) 130
BseXI GCAGC 1 cut(s) 523
BsgI GTGCAG 1 cut(s) 468
BshFI GGCC 3 cut(s) 24, 423, 802
BsiSI CCGG 2 cut(s) 148, 564
BslFI GGGAC 3 cut(s) 139, 351, 582
BslI CCNNNNNNNGG 1 cut(s) 20
BsmAI GTCTC 3 cut(s) 65, 422, 468
BsmBI CGTCTC 1 cut(s) 65
BsmFI GGGAC 3 cut(s) 139, 351, 582
BsnI GGCC 3 cut(s) 24, 423, 802
Bso31I GGTCTC 1 cut(s) 468
Bsp143I GATC 2 cut(s) 73, 742
Bsp19I CCATGG 1 cut(s) 828
BspACI CCGC 2 cut(s) 14, 151
BspANI GGCC 3 cut(s) 24, 423, 802
BspCNI CTCAG 1 cut(s) 487
BspLI GGNNCC 1 cut(s) 155
BspTNI GGTCTC 1 cut(s) 468
BsrDI GCAATG 1 cut(s) 911
BsrI ACTGG 1 cut(s) 1059
BssECI CCNNGG 3 cut(s) 564, 666, 828
BssMI GATC 2 cut(s) 73, 742
BssT1I CCWWGG 1 cut(s) 828
Bst4CI ACNGT 1 cut(s) 186
Bst6I CTCTTC 2 cut(s) 874, 969
BstDEI CTNAG 5 cut(s) 211, 411, 444, 495, 531
BstDSI CCRYGG 1 cut(s) 828
BstF5I GGATG 2 cut(s) 238, 360
BstHHI GCGC 1 cut(s) 541
BstKTI GATC 2 cut(s) 76, 745
BstMAI GTCTC 3 cut(s) 65, 422, 468
BstMBI GATC 2 cut(s) 73, 742
BstMWI GCNNNNNNNGC 2 cut(s) 491, 506
BstNSI RCATGY 2 cut(s) 651, 947
BstSCI CCNGG 1 cut(s) 563
BstV1I GCAGC 1 cut(s) 523
BstV2I GAAGAC 1 cut(s) 850
Bsu36I CCTNAGG 1 cut(s) 531
BsuI GTATCC 1 cut(s) 637
BsuRI GGCC 3 cut(s) 24, 423, 802
BtgI CCRYGG 1 cut(s) 828
BtrI CACGTC 2 cut(s) 254, 341
BtsCI GGATG 2 cut(s) 238, 360
BtsIMutI CAGTG 1 cut(s) 182
CfoI GCGC 1 cut(s) 541
Cfr13I GGNCC 1 cut(s) 153
CseI GACGC 1 cut(s) 928
CviAII CATG 8 cut(s) 205, 286, 425, 648, 829, 862, 944, 985
DdeI CTNAG 5 cut(s) 211, 411, 444, 495, 531
DpnI GATC 2 cut(s) 75, 744
DpnII GATC 2 cut(s) 73, 742
DraI TTTAAA 1 cut(s) 886
DrdI GACNNNNNNGTC 1 cut(s) 576
DriI GACNNNNNGTC 1 cut(s) 435
DseDI GACNNNNNNGTC 1 cut(s) 576
EaeI YGGCCR 2 cut(s) 22, 421
Eam1104I CTCTTC 2 cut(s) 874, 969
Eam1105I GACNNNNNGTC 1 cut(s) 435
EarI CTCTTC 2 cut(s) 874, 969
Eco130I CCWWGG 1 cut(s) 828
Eco147I AGGCCT 1 cut(s) 802
Eco31I GGTCTC 1 cut(s) 468
Eco47I GGWCC 1 cut(s) 153
Eco57I CTGAAG 1 cut(s) 1020
Eco81I CCTNAGG 1 cut(s) 531
EcoRI GAATTC 1 cut(s) 522
EcoT14I CCWWGG 1 cut(s) 828
EcoT22I ATGCAT 1 cut(s) 712
ErhI CCWWGG 1 cut(s) 828
Esp3I CGTCTC 1 cut(s) 65
FaeI CATG 8 cut(s) 208, 289, 428, 651, 832, 865, 947, 988
FalI AAGNNNNNCTT 2 cut(s) 759, 791
FaqI GGGAC 3 cut(s) 139, 351, 582
FatI CATG 8 cut(s) 204, 285, 424, 647, 828, 861, 943, 984
FbaI TGATCA 1 cut(s) 742
Fnu4HI GCNGC 1 cut(s) 537
FokI GGATG 2 cut(s) 245, 367
Fsp4HI GCNGC 1 cut(s) 537
FspBI CTAG 3 cut(s) 378, 798, 815
GlaI GCGC 1 cut(s) 540
GluI GCNGC 1 cut(s) 537
HaeIII GGCC 3 cut(s) 24, 423, 802
HapII CCGG 2 cut(s) 148, 564
HgaI GACGC 1 cut(s) 928
HhaI GCGC 1 cut(s) 541
Hin1II CATG 8 cut(s) 208, 289, 428, 651, 832, 865, 947, 988
Hin6I GCGC 1 cut(s) 539
HinP1I GCGC 1 cut(s) 539
HindIII AAGCTT 3 cut(s) 134, 365, 716
HinfI GANTC 2 cut(s) 120, 515
HpaII CCGG 2 cut(s) 148, 564
HphI GGTGA 2 cut(s) 337, 684
Hpy188I TCNGA 1 cut(s) 161
Hpy188III TCNNGA 3 cut(s) 314, 519, 815
HpyAV CCTTC 4 cut(s) 367, 450, 921, 1044
HpyCH4III ACNGT 1 cut(s) 186
HpyCH4IV ACGT 2 cut(s) 253, 340
HpyCH4V TGCA 8 cut(s) 225, 485, 710, 893, 904, 982, 1000, 1051
HpyF10VI GCNNNNNNNGC 2 cut(s) 491, 506
HpyF3I CTNAG 5 cut(s) 211, 411, 444, 495, 531
HpySE526I ACGT 2 cut(s) 253, 340
Hsp92II CATG 8 cut(s) 208, 289, 428, 651, 832, 865, 947, 988
HspAI GCGC 1 cut(s) 539
Ksp22I TGATCA 1 cut(s) 742
Kzo9I GATC 2 cut(s) 73, 742
LpnPI CCDG 6 cut(s) 161, 163, 299, 504, 577, 1040
Lsp1109I GCAGC 1 cut(s) 523
LweI GCATC 2 cut(s) 719, 902
MaeI CTAG 3 cut(s) 378, 798, 815
MaeII ACGT 2 cut(s) 253, 340
MaeIII GTNAC 2 cut(s) 180, 325
MalI GATC 2 cut(s) 75, 744
MboI GATC 2 cut(s) 73, 742
MboII GAAGA 9 cut(s) 227, 314, 329, 647, 671, 855, 861, 942, 956
MlsI TGGCCA 1 cut(s) 423
MluCI AATT 9 cut(s) 220, 237, 279, 332, 360, 401, 522, 545, 607
MluNI TGGCCA 1 cut(s) 423
MmeI TCCRAC 1 cut(s) 243
MnlI CCTC 9 cut(s) 108, 167, 223, 490, 537, 661, 718, 972, 1023
Mox20I TGGCCA 1 cut(s) 423
Mph1103I ATGCAT 1 cut(s) 712
MscI TGGCCA 1 cut(s) 423
MseI TTAA 7 cut(s) 363, 720, 750, 759, 765, 777, 885
MslI CAYNNNNRTG 2 cut(s) 296, 471
Msp20I TGGCCA 1 cut(s) 423
MspI CCGG 2 cut(s) 148, 564
MspR9I CCNGG 1 cut(s) 565
MwoI GCNNNNNNNGC 2 cut(s) 491, 506
NciI CCSGG 1 cut(s) 565
NcoI CCATGG 1 cut(s) 828
NdeII GATC 2 cut(s) 73, 742
NlaIII CATG 8 cut(s) 208, 289, 428, 651, 832, 865, 947, 988
NlaIV GGNNCC 1 cut(s) 155
NmeAIII GCCGAG 1 cut(s) 691
NmuCI GTSAC 2 cut(s) 180, 325
NsiI ATGCAT 1 cut(s) 712
NspI RCATGY 2 cut(s) 651, 947
OliI CACNNNNGTG 1 cut(s) 296
PceI AGGCCT 1 cut(s) 802
PciI ACATGT 1 cut(s) 647
PcsI WCGNNNNNNNCGW 1 cut(s) 55
PfeI GAWTC 2 cut(s) 120, 515
PkrI GCNGC 1 cut(s) 538
PscI ACATGT 1 cut(s) 647
PsiI TTATAA 1 cut(s) 603
PspN4I GGNNCC 1 cut(s) 155
PspPI GGNCC 1 cut(s) 153
PsrI GAACNNNNNNTAC 2 cut(s) 775, 807
RseI CAYNNNNRTG 2 cut(s) 296, 471
SaqAI TTAA 7 cut(s) 363, 720, 750, 759, 765, 777, 885
SatI GCNGC 1 cut(s) 537
Sau3AI GATC 2 cut(s) 73, 742
Sau96I GGNCC 1 cut(s) 153
ScrFI CCNGG 1 cut(s) 565
SfaNI GCATC 2 cut(s) 719, 902
SinI GGWCC 1 cut(s) 153
SmiMI CAYNNNNRTG 2 cut(s) 296, 471
SmlI CTYRAG 1 cut(s) 109
SmoI CTYRAG 1 cut(s) 109
Sse9I AATT 9 cut(s) 220, 237, 279, 332, 360, 401, 522, 545, 607
SseBI AGGCCT 1 cut(s) 802
SsiI CCGC 2 cut(s) 14, 151
SspMI CTAG 3 cut(s) 378, 798, 815
StuI AGGCCT 1 cut(s) 802
StyD4I CCNGG 1 cut(s) 563
StyI CCWWGG 1 cut(s) 828
TaaI ACNGT 1 cut(s) 186
TaiI ACGT 2 cut(s) 256, 343
TaqI TCGA 2 cut(s) 123, 130
TasI AATT 9 cut(s) 220, 237, 279, 332, 360, 401, 522, 545, 607
TfiI GAWTC 2 cut(s) 120, 515
Tru1I TTAA 7 cut(s) 363, 720, 750, 759, 765, 777, 885
Tru9I TTAA 7 cut(s) 363, 720, 750, 759, 765, 777, 885
TscAI CASTG 1 cut(s) 189
TseFI GTSAC 2 cut(s) 180, 325
TseI GCWGC 1 cut(s) 536
Tsp45I GTSAC 2 cut(s) 180, 325
TspDTI ATGAA 6 cut(s) 249, 302, 321, 371, 861, 878
TspRI CASTG 1 cut(s) 189
VpaK11BI GGWCC 1 cut(s) 153
XapI RAATTY 4 cut(s) 237, 401, 522, 545
XbaI TCTAGA 1 cut(s) 814
XceI RCATGY 2 cut(s) 651, 947
XspI CTAG 3 cut(s) 378, 798, 815
Zsp2I ATGCAT 1 cut(s) 712
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.