RLG00000007883

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
22388006 .. 22391854
3849 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007883

Sequence Viewer

Length: 447 bp
ATGGATACCATCTTTGACAAGGATGAAGAACAGATTGTGCTTGGACAAGAGGTTACAAAGAATATAGTATGTATAAATAATGAGCTGTTAAGTGGTAGAGAAGTTGCTTTTCCAGATGAGGATGAATTCGGTTTGCAAGGTTATGACGAGTTCAGTTTGCTGGGTGAGAATGGAATTGATTTGCAAGGTGAGGAAGAAGATGATTTAGATTCTATTCCTATTAGTGACAATTGCGAGCAACAAGAAGTCAATGAATATGAAGTTCCAATGCTTGATTTTGCAACTCAAGAATCCAATCTTAGCACTGGTACCCAAGTATCAGTTTATAGTACAAGTGTAACTTTGCAGAATGGCTTTTCTTTCACTCAAATGCTCCAGGAAATTTCAATGAATCATGCTAATTCTTCACAAAGTAATGAAGAAGGCAAAAAGCAGCTGGGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

16.47

Weight (kDa)

4.05

Isoelectric Point (pI)

43.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 308
AccB1I GGYRCC 1 cut(s) 308
AcsI RAATTY 2 cut(s) 125, 381
AfaI GTAC 2 cut(s) 310, 331
AgsI TTSAA 1 cut(s) 387
AjnI CCWGG 1 cut(s) 375
AluBI AGCT 2 cut(s) 85, 436
AluI AGCT 2 cut(s) 85, 436
ApeKI GCWGC 1 cut(s) 433
ApoI RAATTY 2 cut(s) 125, 381
Asp718I GGTACC 1 cut(s) 308
AsuHPI GGTGA 2 cut(s) 176, 200
BaeI ACNNNNGTAYC 4 cut(s) 300, 300, 333, 333
BanI GGYRCC 1 cut(s) 308
BccI CCATC 1 cut(s) 17
BciT130I CCWGG 1 cut(s) 377
BisI GCNGC 1 cut(s) 434
BlsI GCNGC 1 cut(s) 435
Bme1390I CCNGG 1 cut(s) 377
BmiI GGNNCC 1 cut(s) 310
BmrFI CCNGG 1 cut(s) 377
BpmI CTGGAG 1 cut(s) 359
BpuEI CTTGAG 1 cut(s) 270
Bse1I ACTGG 1 cut(s) 310
BseBI CCWGG 1 cut(s) 377
BseGI GGATG 2 cut(s) 28, 127
BseNI ACTGG 1 cut(s) 310
BseYI CCCAGC 2 cut(s) 160, 436
BshNI GGYRCC 1 cut(s) 308
BspLI GGNNCC 1 cut(s) 310
BspT107I GGYRCC 1 cut(s) 308
BsrI ACTGG 1 cut(s) 310
Bst2UI CCWGG 1 cut(s) 377
BstC8I GCNNGC 1 cut(s) 236
BstDEI CTNAG 1 cut(s) 299
BstF5I GGATG 2 cut(s) 28, 127
BstNI CCWGG 1 cut(s) 377
BstSCI CCNGG 1 cut(s) 375
BtsCI GGATG 2 cut(s) 28, 127
BtsIMutI CAGTG 1 cut(s) 303
Cac8I GCNNGC 1 cut(s) 236
Csp6I GTAC 2 cut(s) 309, 330
CviAII CATG 1 cut(s) 395
CviJI RGCY 3 cut(s) 85, 354, 436
CviKI_1 RGCY 3 cut(s) 85, 354, 436
CviQI GTAC 2 cut(s) 309, 330
DdeI CTNAG 1 cut(s) 299
EcoRI GAATTC 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 375
FaeI CATG 1 cut(s) 398
FaiI YATR 7 cut(s) 65, 70, 74, 144, 258, 327, 396
FalI AAGNNNNNCTT 2 cut(s) 325, 357
FatI CATG 1 cut(s) 394
Fnu4HI GCNGC 1 cut(s) 434
FokI GGATG 2 cut(s) 35, 134
Fsp4HI GCNGC 1 cut(s) 434
GluI GCNGC 1 cut(s) 434
GsaI CCCAGC 2 cut(s) 164, 440
GsuI CTGGAG 1 cut(s) 359
Hin1II CATG 1 cut(s) 398
HinfI GANTC 3 cut(s) 209, 290, 391
HphI GGTGA 2 cut(s) 176, 200
Hpy188III TCNNGA 2 cut(s) 113, 287
HpyAV CCTTC 1 cut(s) 416
HpyCH4V TGCA 4 cut(s) 136, 184, 281, 346
HpyF3I CTNAG 1 cut(s) 299
Hsp92II CATG 1 cut(s) 398
KpnI GGTACC 1 cut(s) 312
LmnI GCTCC 1 cut(s) 378
LpnPI CCDG 6 cut(s) 126, 146, 291, 362, 389, 422
MaeIII GTNAC 3 cut(s) 52, 224, 337
MboII GAAGA 5 cut(s) 38, 206, 209, 396, 431
MfeI CAATTG 1 cut(s) 229
MluCI AATT 5 cut(s) 125, 174, 229, 381, 400
MnlI CCTC 3 cut(s) 43, 112, 184
MseI TTAA 1 cut(s) 89
MslI CAYNNNNRTG 1 cut(s) 368
MspA1I CMGCKG 1 cut(s) 436
MspR9I CCNGG 1 cut(s) 377
MunI CAATTG 1 cut(s) 229
MvaI CCWGG 1 cut(s) 377
NlaIII CATG 1 cut(s) 398
NlaIV GGNNCC 1 cut(s) 310
NmuCI GTSAC 1 cut(s) 224
PfeI GAWTC 3 cut(s) 209, 290, 391
PfoI TCCNGGA 1 cut(s) 375
PkrI GCNGC 1 cut(s) 435
Psp6I CCWGG 1 cut(s) 375
PspFI CCCAGC 2 cut(s) 160, 436
PspGI CCWGG 1 cut(s) 375
PspN4I GGNNCC 1 cut(s) 310
PvuII CAGCTG 1 cut(s) 436
RsaI GTAC 2 cut(s) 310, 331
RsaNI GTAC 2 cut(s) 309, 330
RseI CAYNNNNRTG 1 cut(s) 368
SaqAI TTAA 1 cut(s) 89
SatI GCNGC 1 cut(s) 434
ScrFI CCNGG 1 cut(s) 377
SetI ASST 5 cut(s) 54, 87, 142, 190, 438
SmiMI CAYNNNNRTG 1 cut(s) 368
SmlI CTYRAG 1 cut(s) 285
SmoI CTYRAG 1 cut(s) 285
Sse9I AATT 5 cut(s) 125, 174, 229, 381, 400
StyD4I CCNGG 1 cut(s) 375
TasI AATT 5 cut(s) 125, 174, 229, 381, 400
TatI WGTACW 1 cut(s) 329
TfiI GAWTC 3 cut(s) 209, 290, 391
Tru1I TTAA 1 cut(s) 89
Tru9I TTAA 1 cut(s) 89
TscAI CASTG 1 cut(s) 310
TseFI GTSAC 1 cut(s) 224
TseI GCWGC 1 cut(s) 433
Tsp45I GTSAC 1 cut(s) 224
TspDTI ATGAA 6 cut(s) 39, 138, 267, 273, 404, 432
TspRI CASTG 1 cut(s) 310
XapI RAATTY 2 cut(s) 125, 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.