Rh5AG375200

protein FAR1-RELATED SEQUENCE

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
63807309 .. 63809014
1706 bp
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UTR
Exon/CDS
Intron
Rh5AG375200.1

Sequence Viewer

Length: 540 bp
ATGAGTATTACTAGTTATCATGGAAATGAGGTTCACGGTAATCCTAAGGAATCGATTGGCAAACGGTATGGCTACTTGTGCCGCACTTCTCGTGATATTTTAACTGTTGCAGCAGATGATGAAGAGTTAACAAGATATGCACATGAATGTTTGGTTGAGATGCTCAAAGGCTTAGAGCTAATAAAGAAAAATCGCAATGAGAAAGAGGGGAGAAGTTCTGGTCATAGTTCACAAGATAAAATTACTTTTGGTGAAAGTGAAGAGGTTGAGGGAATAGTTCAATCTAATGCTTGTGAAACAACAATTGTGCGTGGAGTTAAAAGAAAAGCTACAATTGGTCGTCCACGTACCAGATTCAAAGACCCGGCTGAACAAAAAAAGAGTAAAGTACCAAAGAAAAGCACAAAAGCTTCCACAAGAAGAAAAATACCCATGCAGGAATTTGAAAGCATAGGTGCCAGTTCAGAAACACAACCGAATAGTGAACATTATGTTCAATTTGCTGATGTTTTGACTCAAGTAAGTGATTATCTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

179

Amino Acids

20.17

Weight (kDa)

8.68

Isoelectric Point (pI)

43.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 455
AciI CCGC 1 cut(s) 82
AcsI RAATTY 1 cut(s) 440
AfaI GTAC 2 cut(s) 349, 390
AgsI TTSAA 4 cut(s) 281, 358, 446, 497
AhlI ACTAGT 1 cut(s) 11
AloI GAACNNNNNNTCC 2 cut(s) 15, 47
AluBI AGCT 3 cut(s) 178, 329, 410
AluI AGCT 3 cut(s) 178, 329, 410
ApeKI GCWGC 1 cut(s) 110
ApoI RAATTY 1 cut(s) 440
AsuC2I CCSGG 1 cut(s) 365
AsuHPI GGTGA 1 cut(s) 263
AxyI CCTNAGG 1 cut(s) 45
BanI GGYRCC 1 cut(s) 455
BauI CACGAG 1 cut(s) 90
BbvI GCAGC 1 cut(s) 122
BcnI CCSGG 1 cut(s) 365
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 1 cut(s) 12
BisI GCNGC 2 cut(s) 82, 111
BlsI GCNGC 2 cut(s) 83, 112
Bme1390I CCNGG 1 cut(s) 365
BmiI GGNNCC 1 cut(s) 457
BmrFI CCNGG 1 cut(s) 365
BmsI GCATC 1 cut(s) 150
BpuEI CTTGAG 1 cut(s) 501
BpuMI CCSGG 1 cut(s) 365
Bsa29I ATCGAT 1 cut(s) 53
BsaAI YACGTR 1 cut(s) 347
Bse1I ACTGG 1 cut(s) 459
Bse21I CCTNAGG 1 cut(s) 45
Bse3DI GCAATG 1 cut(s) 202
BseCI ATCGAT 1 cut(s) 53
BseMI GCAATG 1 cut(s) 202
BseNI ACTGG 1 cut(s) 459
BseXI GCAGC 1 cut(s) 122
BshNI GGYRCC 1 cut(s) 455
BshVI ATCGAT 1 cut(s) 53
BsiSI CCGG 1 cut(s) 365
BspACI CCGC 1 cut(s) 82
BspDI ATCGAT 1 cut(s) 53
BspLI GGNNCC 1 cut(s) 457
BspT107I GGYRCC 1 cut(s) 455
BsrDI GCAATG 1 cut(s) 202
BsrI ACTGG 1 cut(s) 459
BssSI CACGAG 1 cut(s) 90
Bst2BI CACGAG 1 cut(s) 90
Bst4CI ACNGT 3 cut(s) 38, 66, 106
Bst6I CTCTTC 2 cut(s) 117, 255
BstBAI YACGTR 1 cut(s) 347
BstDEI CTNAG 2 cut(s) 45, 172
BstMWI GCNNNNNNNGC 1 cut(s) 78
BstSCI CCNGG 1 cut(s) 363
BstV1I GCAGC 1 cut(s) 122
Bsu15I ATCGAT 1 cut(s) 53
Bsu36I CCTNAGG 1 cut(s) 45
BsuTUI ATCGAT 1 cut(s) 53
ClaI ATCGAT 1 cut(s) 53
Csp6I GTAC 2 cut(s) 348, 389
CviAII CATG 3 cut(s) 20, 143, 433
CviJI RGCY 6 cut(s) 72, 171, 178, 329, 368, 410
CviKI_1 RGCY 6 cut(s) 72, 171, 178, 329, 368, 410
CviQI GTAC 2 cut(s) 348, 389
DdeI CTNAG 2 cut(s) 45, 172
Eam1104I CTCTTC 2 cut(s) 117, 255
EarI CTCTTC 2 cut(s) 117, 255
Eco81I CCTNAGG 1 cut(s) 45
FaeI CATG 3 cut(s) 23, 146, 436
FaiI YATR 8 cut(s) 21, 69, 138, 144, 225, 434, 452, 492
FatI CATG 3 cut(s) 19, 142, 432
Fnu4HI GCNGC 2 cut(s) 82, 111
Fsp4HI GCNGC 2 cut(s) 82, 111
FspBI CTAG 1 cut(s) 12
GluI GCNGC 2 cut(s) 82, 111
HapII CCGG 1 cut(s) 365
Hin1II CATG 3 cut(s) 23, 146, 436
HincII GTYRAC 1 cut(s) 129
HindII GTYRAC 1 cut(s) 129
HindIII AAGCTT 1 cut(s) 408
HinfI GANTC 3 cut(s) 50, 354, 514
HpaI GTTAAC 1 cut(s) 129
HpaII CCGG 1 cut(s) 365
HphI GGTGA 1 cut(s) 263
Hpy166II GTNNAC 5 cut(s) 34, 129, 230, 344, 485
Hpy188I TCNGA 1 cut(s) 466
Hpy188III TCNNGA 2 cut(s) 92, 533
Hpy8I GTNNAC 5 cut(s) 34, 129, 230, 344, 485
HpyCH4III ACNGT 3 cut(s) 38, 66, 106
HpyCH4IV ACGT 1 cut(s) 346
HpyCH4V TGCA 3 cut(s) 110, 140, 436
HpyF10VI GCNNNNNNNGC 1 cut(s) 78
HpyF3I CTNAG 2 cut(s) 45, 172
HpySE526I ACGT 1 cut(s) 346
Hsp92II CATG 3 cut(s) 23, 146, 436
KspAI GTTAAC 1 cut(s) 129
LpnPI CCDG 5 cut(s) 204, 364, 378, 422, 472
Lsp1109I GCAGC 1 cut(s) 122
LweI GCATC 1 cut(s) 150
MaeI CTAG 1 cut(s) 12
MaeII ACGT 1 cut(s) 346
MboII GAAGA 3 cut(s) 134, 272, 432
MfeI CAATTG 2 cut(s) 303, 333
MluCI AATT 5 cut(s) 240, 303, 333, 440, 497
MlyI GAGTC 1 cut(s) 508
MnlI CCTC 4 cut(s) 22, 199, 256, 262
MseI TTAA 3 cut(s) 101, 128, 318
MslI CAYNNNNRTG 2 cut(s) 24, 145
MspI CCGG 1 cut(s) 365
MspR9I CCNGG 1 cut(s) 365
MunI CAATTG 2 cut(s) 303, 333
MwoI GCNNNNNNNGC 1 cut(s) 78
NciI CCSGG 1 cut(s) 365
NlaIII CATG 3 cut(s) 23, 146, 436
NlaIV GGNNCC 1 cut(s) 457
PfeI GAWTC 2 cut(s) 50, 354
PkrI GCNGC 2 cut(s) 83, 112
PleI GAGTC 1 cut(s) 508
PpsI GAGTC 1 cut(s) 508
Ppu21I YACGTR 1 cut(s) 347
PspN4I GGNNCC 1 cut(s) 457
RsaI GTAC 2 cut(s) 349, 390
RsaNI GTAC 2 cut(s) 348, 389
RseI CAYNNNNRTG 2 cut(s) 24, 145
SaqAI TTAA 3 cut(s) 101, 128, 318
SatI GCNGC 2 cut(s) 82, 111
SchI GAGTC 1 cut(s) 508
ScrFI CCNGG 1 cut(s) 365
SetI ASST 7 cut(s) 33, 180, 267, 331, 349, 412, 457
SfaNI GCATC 1 cut(s) 150
SmiMI CAYNNNNRTG 2 cut(s) 24, 145
SmlI CTYRAG 1 cut(s) 516
SmoI CTYRAG 1 cut(s) 516
SpeI ACTAGT 1 cut(s) 11
Sse9I AATT 5 cut(s) 240, 303, 333, 440, 497
SsiI CCGC 1 cut(s) 82
SspMI CTAG 1 cut(s) 12
StyD4I CCNGG 1 cut(s) 363
TaaI ACNGT 3 cut(s) 38, 66, 106
TaiI ACGT 1 cut(s) 349
TaqI TCGA 1 cut(s) 53
TasI AATT 5 cut(s) 240, 303, 333, 440, 497
TauI GCSGC 1 cut(s) 84
TfiI GAWTC 2 cut(s) 50, 354
Tru1I TTAA 3 cut(s) 101, 128, 318
Tru9I TTAA 3 cut(s) 101, 128, 318
TseI GCWGC 1 cut(s) 110
TspDTI ATGAA 2 cut(s) 135, 159
XapI RAATTY 1 cut(s) 440
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.