RLG00000008804

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000325
Physical Location & Seq
Reverse (-)
39658426 .. 39659547
1122 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008804

Sequence Viewer

Length: 597 bp
ATGGGAAAGAGGAGAAGACTTGAAAATAAAGACATGAACTCTTCAACTGTTGCTTCCAAAAATGCATCTACAACACAATGTGTTTCTGTGACACGAAGTGTTTTAGCGACACAACATATTCCTTCTACACAGTCTCTTCTACCTCTTTCTATGCAAAGGGTATCTAATGTGCAACTTACCTTGCCTCTGTCACAACCTATTCCGCCTTCAGCACCCTTATTGCAACTGGAACCTAATTGTGGTAATTTAACAATGGATGTGCCCATTAAACAGAGAGAATTGCCTCAGACCCCATTTATGCAGCATTCTCAATCAACCATGGATGTCACAAGTGCCAGGAGCTTATTACCTGGAGCATCAAAACTTTCACAGAAGCTTCTCAGTGGTGATGGTTTAGGCATGAATTTTCAAGCTAACAAACCTCAACTAATGCCTTTTGCACAACAAGTTCATTTTCCCCAGCAAAATCTGGGAGTCTACAATACTATAAGCAATTATCAGCAATTGCTCCAGATACAATCCAAAGTAGCAGCAAGCATGGAGAATGGCCATTTGGTCGAGGCTGGGGAGAGGTTGCAATCTCACAAGCAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

21.75

Weight (kDa)

9.8

Isoelectric Point (pI)

58.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 477
AciI CCGC 1 cut(s) 203
AcoI YGGCCR 1 cut(s) 547
AcsI RAATTY 1 cut(s) 403
AcuI CTGAAG 1 cut(s) 192
AdeI CACNNNGTG 2 cut(s) 80, 98
AfiI CCNNNNNNNGG 1 cut(s) 239
AgsI TTSAA 3 cut(s) 23, 45, 410
AjnI CCWGG 2 cut(s) 335, 349
AjuI GAANNNNNNNTTGG 2 cut(s) 536, 568
AluBI AGCT 3 cut(s) 342, 376, 413
AluI AGCT 3 cut(s) 342, 376, 413
Alw26I GTCTC 1 cut(s) 138
AoxI GGCC 1 cut(s) 547
ApeKI GCWGC 2 cut(s) 301, 530
ApoI RAATTY 1 cut(s) 403
AsuHPI GGTGA 1 cut(s) 398
BaeGI GKGCMC 1 cut(s) 264
BalI TGGCCA 1 cut(s) 549
BbsI GAAGAC 1 cut(s) 22
BbvI GCAGC 2 cut(s) 313, 542
BccI CCATC 1 cut(s) 383
BciT130I CCWGG 2 cut(s) 337, 351
BcoDI GTCTC 1 cut(s) 138
BisI GCNGC 2 cut(s) 302, 531
BlsI GCNGC 2 cut(s) 303, 532
Bme1390I CCNGG 2 cut(s) 337, 351
BmiI GGNNCC 1 cut(s) 231
BmrFI CCNGG 2 cut(s) 337, 351
BmsI GCATC 2 cut(s) 74, 365
BpiI GAAGAC 1 cut(s) 22
BpmI CTGGAG 2 cut(s) 372, 494
BsaJI CCNNGG 1 cut(s) 318
Bsc4I CCNNNNNNNGG 1 cut(s) 239
Bse1I ACTGG 1 cut(s) 231
BseBI CCWGG 2 cut(s) 337, 351
BseDI CCNNGG 1 cut(s) 318
BseGI GGATG 2 cut(s) 262, 328
BseLI CCNNNNNNNGG 1 cut(s) 239
BseMII CTCAG 2 cut(s) 299, 394
BseNI ACTGG 1 cut(s) 231
BseRI GAGGAG 1 cut(s) 25
BseSI GKGCMC 1 cut(s) 264
BseXI GCAGC 2 cut(s) 313, 542
BseYI CCCAGC 2 cut(s) 459, 563
BshFI GGCC 1 cut(s) 549
BslI CCNNNNNNNGG 1 cut(s) 239
BsmAI GTCTC 1 cut(s) 138
BsmI GAATGC 1 cut(s) 304
BsnI GGCC 1 cut(s) 549
Bsp1286I GDGCHC 1 cut(s) 264
Bsp19I CCATGG 1 cut(s) 318
BspACI CCGC 1 cut(s) 203
BspANI GGCC 1 cut(s) 549
BspCNI CTCAG 2 cut(s) 298, 393
BspLI GGNNCC 1 cut(s) 231
BsrI ACTGG 1 cut(s) 231
BssECI CCNNGG 1 cut(s) 318
BssT1I CCWWGG 1 cut(s) 318
Bst2UI CCWGG 2 cut(s) 337, 351
Bst4CI ACNGT 2 cut(s) 49, 132
Bst6I CTCTTC 2 cut(s) 46, 141
BstC8I GCNNGC 1 cut(s) 535
BstDEI CTNAG 2 cut(s) 285, 380
BstDSI CCRYGG 1 cut(s) 318
BstF5I GGATG 2 cut(s) 262, 328
BstMAI GTCTC 1 cut(s) 138
BstNI CCWGG 2 cut(s) 337, 351
BstSCI CCNGG 2 cut(s) 335, 349
BstSLI GKGCMC 1 cut(s) 264
BstV1I GCAGC 2 cut(s) 313, 542
BstV2I GAAGAC 1 cut(s) 22
BsuRI GGCC 1 cut(s) 549
BtgI CCRYGG 1 cut(s) 318
BtsCI GGATG 2 cut(s) 262, 328
BtsIMutI CAGTG 1 cut(s) 388
Cac8I GCNNGC 1 cut(s) 535
CviAII CATG 4 cut(s) 34, 319, 400, 538
CviJI RGCY 5 cut(s) 342, 376, 413, 549, 563
CviKI_1 RGCY 5 cut(s) 342, 376, 413, 549, 563
DdeI CTNAG 2 cut(s) 285, 380
DraIII CACNNNGTG 2 cut(s) 80, 98
EaeI YGGCCR 1 cut(s) 547
Eam1104I CTCTTC 2 cut(s) 46, 141
EarI CTCTTC 2 cut(s) 46, 141
EciI GGCGGA 1 cut(s) 192
Eco130I CCWWGG 1 cut(s) 318
Eco57I CTGAAG 1 cut(s) 192
EcoRII CCWGG 2 cut(s) 335, 349
EcoT14I CCWWGG 1 cut(s) 318
EcoT22I ATGCAT 1 cut(s) 67
ErhI CCWWGG 1 cut(s) 318
FaeI CATG 4 cut(s) 37, 322, 403, 541
FaiI YATR 8 cut(s) 35, 117, 152, 299, 320, 401, 488, 539
FatI CATG 4 cut(s) 33, 318, 399, 537
FblI GTMKAC 1 cut(s) 477
Fnu4HI GCNGC 2 cut(s) 302, 531
FokI GGATG 2 cut(s) 269, 335
Fsp4HI GCNGC 2 cut(s) 302, 531
GluI GCNGC 2 cut(s) 302, 531
GsaI CCCAGC 2 cut(s) 463, 567
GsuI CTGGAG 2 cut(s) 372, 494
HaeIII GGCC 1 cut(s) 549
Hin1II CATG 4 cut(s) 37, 322, 403, 541
HindIII AAGCTT 1 cut(s) 374
HinfI GANTC 1 cut(s) 474
HphI GGTGA 1 cut(s) 398
Hpy166II GTNNAC 1 cut(s) 478
Hpy188I TCNGA 1 cut(s) 288
Hpy188III TCNNGA 1 cut(s) 511
Hpy8I GTNNAC 1 cut(s) 478
HpyAV CCTTC 2 cut(s) 132, 216
HpyCH4III ACNGT 2 cut(s) 49, 132
HpyCH4V TGCA 7 cut(s) 65, 154, 172, 223, 301, 440, 577
HpyF3I CTNAG 2 cut(s) 285, 380
Hsp92II CATG 4 cut(s) 37, 322, 403, 541
LmnI GCTCC 3 cut(s) 339, 353, 513
LpnPI CCDG 9 cut(s) 212, 322, 336, 349, 363, 455, 473, 524, 549
Lsp1109I GCAGC 2 cut(s) 313, 542
LweI GCATC 2 cut(s) 74, 365
MaeIII GTNAC 3 cut(s) 88, 189, 325
MboII GAAGA 3 cut(s) 27, 33, 128
MfeI CAATTG 1 cut(s) 503
MhlI GDGCHC 1 cut(s) 264
MlsI TGGCCA 1 cut(s) 549
MluCI AATT 7 cut(s) 235, 244, 278, 403, 493, 503, 592
MluNI TGGCCA 1 cut(s) 549
MlyI GAGTC 1 cut(s) 483
MnlI CCTC 7 cut(s) 3, 153, 195, 294, 432, 553, 564
Mox20I TGGCCA 1 cut(s) 549
Mph1103I ATGCAT 1 cut(s) 67
MscI TGGCCA 1 cut(s) 549
MseI TTAA 2 cut(s) 248, 267
Msp20I TGGCCA 1 cut(s) 549
MspR9I CCNGG 2 cut(s) 337, 351
MunI CAATTG 1 cut(s) 503
Mva1269I GAATGC 1 cut(s) 304
MvaI CCWGG 2 cut(s) 337, 351
NcoI CCATGG 1 cut(s) 318
NlaIII CATG 4 cut(s) 37, 322, 403, 541
NlaIV GGNNCC 1 cut(s) 231
NmuCI GTSAC 3 cut(s) 88, 189, 325
NsiI ATGCAT 1 cut(s) 67
PctI GAATGC 1 cut(s) 304
PkrI GCNGC 2 cut(s) 303, 532
PleI GAGTC 1 cut(s) 482
PpsI GAGTC 1 cut(s) 482
Psp6I CCWGG 2 cut(s) 335, 349
PspFI CCCAGC 2 cut(s) 459, 563
PspGI CCWGG 2 cut(s) 335, 349
PspN4I GGNNCC 1 cut(s) 231
SaqAI TTAA 2 cut(s) 248, 267
SatI GCNGC 2 cut(s) 302, 531
SchI GAGTC 1 cut(s) 483
ScrFI CCNGG 2 cut(s) 337, 351
SduI GDGCHC 1 cut(s) 264
SfaNI GCATC 2 cut(s) 74, 365
Sse9I AATT 7 cut(s) 235, 244, 278, 403, 493, 503, 592
SsiI CCGC 1 cut(s) 203
StyD4I CCNGG 2 cut(s) 335, 349
StyI CCWWGG 1 cut(s) 318
TaaI ACNGT 2 cut(s) 49, 132
TaqI TCGA 1 cut(s) 558
TasI AATT 7 cut(s) 235, 244, 278, 403, 493, 503, 592
Tru1I TTAA 2 cut(s) 248, 267
Tru9I TTAA 2 cut(s) 248, 267
TscAI CASTG 1 cut(s) 388
TseFI GTSAC 3 cut(s) 88, 189, 325
TseI GCWGC 2 cut(s) 301, 530
Tsp45I GTSAC 3 cut(s) 88, 189, 325
TspDTI ATGAA 3 cut(s) 50, 416, 440
TspRI CASTG 1 cut(s) 388
XapI RAATTY 1 cut(s) 403
XmiI GTMKAC 1 cut(s) 477
Zsp2I ATGCAT 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.