Rw5G033710

protein FAR1-RELATED SEQUENCE

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
57391039 .. 57398249
7211 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G033710.1

Sequence Viewer

Length: 3078 bp
ATGTTAGACGATCGTGATCTTCTGGTAGCATTTGAAGCATCGGCTTCAGTGGACTTGCACCGCCACTCTAATGCTCTTGTGGATATTCTGCCACCAGAGGCGGATTCGAGTATCTTGCTGCTCAACCAGTCAGAAAAGCCCGACGTCACCTACAGTCCATGTACGGGGCGTCCGGCACAACCACCATTGACACCGATCTGTTCACACAAAGCTCAATTATCAGAGAAATCGAGAAATATAGCCCCTACGGTGTTCGACGACCGAGCAGTGGCTGGTGCTCTCCTCCGGGTCAGCACCGCATCTCCTCCGCCGCTTGCAGAGCAGAGGATCGTGCCTCTCCCGGAGAAGGTCAAGAAGAGCCGCCGGGGACGGAGGTCCCGGAGCTCACAGTATAGCGGCGGCGTCACGTTTTATCGGAGGACCGGGGGATGGGAATCGCATATTTGGCCCCCGGTCATCGGTGTTCTAATCCAAACAGTTAGGCGGTATAAATTCTGGGTTTGGTGTTCTAATCCAAACAGTTCGATCATCAATTCTGGGTTAATGGATACCCAGAATTGTACGAGCTTGGGCAATCAACTAATAAGTGATTCCGAGGACTTACAAGGTAAAGAGCAGTGTGATGATTCTCATTGTGAGCCTACTGATGATTTGCATGTAGTGAATGAAATTGAAAACAATGAAGAGGCAATTGAAGAGGTCATACTTGGAAAAGAGTTTATAGATGTTGAGAGTGCATATAAGTTCTATAAGAATTATGGTGGCAAACATGGATTCAATGTGAGGATAAGAAACAGTAGAAAAAACAATGAGAATTTTGTGACATGGGTGCGTTATTGTTGTGCAAAAGAAGGTTTTCGAGAAAAGGACAAGCGTCGTGCAAATGCATCTTATTCTCAACCAGTTACAAGATGTGGTTGTCAAGCGCATCTGACCATCCTACTGCAGAAGAATGGAAATTTCCAAGTTGTCTCATTTCAGACGAGTCATAATCATGCATTGATTAGTACTCCAATGAAGCATTTGCTTAAGGTCAATAGAAGTATATCTGAGGCACAAAAAGCACATGCAGATGATGCTGAACATTCTGGTTTCTCCATCAAAGCAACTGTGGAGTTGATGAGTAGAGAAGTAGGAGGGCCAGAGAACCTTGGATTTTCACAGAAGGACTACATGAATTACATACATAGAAAGCGAATGTCTAAAATGGAAAAGGGAGATGCAGGTGCTGTATTGCAGTACTTTCAAAAGATGCAATCTGAGAATTCGTCATATTTTTATTCAATCCAACTTGATGAGGATGACATGATCACAAACATATTTTGGGCTGATGCTCGATCGGTAAGTGATTATAGTCTGTTTGGAGATGTGCTTTGTTTTGATACGACATACAGGACAAATGAATATGGTCGACCCTTTGCACCGTTTGTTGGGGTTAATCATCATAAGCAAACAACATTGTTTGGTGCAGCTTTGTTATATGATGAAACAACCGAATCTTTTATTTGGTTATTTGAGACATTCCTCTCTGCTATGTCTGGTAAGCACCCAATGACCATTCTTACTGATCAGTCTGCTGCCATGGCTAGAGCAATAAAAGAAGTTTTTCCACAAGCTACTCATCGCTTATGTGTGTGGCATCTTTATCAAAATGCTGCTAAGAATCTCAGTCATGTCTTTCATGGATCTTCAGAATTTGTTGATGATTTTAGCAATTGCATGTATGACTATGAGTTTGAGCATGAGTGGCTATTAGCATGGAATGGACTTCTTGAGAAATATGGCCTGAAGGAAAACAAGTGGTTGAATAATTTATTTGAATTGCGGGAAAAATGGGCACTAGTGTATGGGAGACATACTTTCACTGCCGATATGAAAAGCACACAGCGAAGTGAATGCATGAATAATGTGCTTAAGAAATATTTGAAGCCAGAGCATAATCTTTTGCGGTTTTTCGAACATTATGAAAGAGTTTTGGCTGATCGAAGATATCAAGAGTTGATTGCTGAATATAAGATGATACAAACAACTCCTGTCTTGGCAGTAAGTGCACATATGCTGCAACATGGAGCAGAGGTGTATACTCCAGAGGTTTTCTTGCTGTTTCAGAAAGAATTTGTGAGAATTCATAATTATAGTACTTACAAGGTTGGTAAGTCTGGGATGACATCAGAGTATATAGTATCATATAGTTCTGAACATAATGAGCACTTGGTCAAATATGAAGCTTCAACACAAAATGTTAATTGTAGTTGTAAAAAGTTCACGTTTGTTGGGATTTTGTGTGCTCATGCACTAAAAGTGCTTGACAAGAAGAATGTGAAGAAGATTCCACCGCAATACATTTTAAAGCGATGGACAAGACAAGCAAAAATTATGAGTATTACTAGTTATCATCCTACTGAGATTCATGGTAATCCTAAGGAGTCGATTGGCAGACGGTATGGCTACTTGTGCCGCACTTCTCGTGATATTTTAACTGTTGCAGCAGATGATGAAGAGTTAACGAGATATGCACATGAATGTTTGGTTGAGATGCTCAAAGGCTTAGAGTTAATAAAGAAAAATCGCACTGAGAAAGAGGGGAGAAGTTCTAGTGATAGCAGCGAAGTGAATGCTACTTTTGGTCAAAGTGAAGAGGTTGAGGGAATAGTTCAATCTAATGCTTGTGAAACAACAACTATCCGTGGAGTTAAAAGAAAAGCTACAATTGGCCGTCCACGTACCAGATTCAAAGACCCGACTGAAAAAAAAAAGAGTAAAGTACCAAAGAAAAGCACAAAAGCTCCCACAAGAAGGAAAATACCCATGCAGGAATTTGAAAGCATTTTGGTCAGTTCAGAAACACACCAAAATAGTGAACATGATGTTCAACTATCTGGTGTTTTGACTCAAATTCTTTTCAAGTTTGCCATTTTGCCTATATGGAGGAAGGTGAGATTGGAACTTGGGACCTCGGACGTAGGGTGGATGCTGAGTAAAGAGGATCAGATTTTGGATGACAACCCTGCTGAAGCTTATTTGCTTTTGGATACTGCTGAAGCTTATTCGTCTATAGAAGATTCAGTCAACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1025

Amino Acids

117.23

Weight (kDa)

7.77

Isoelectric Point (pI)

48.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 248 - 335 8.7e-21 FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like PF21056 418 - 540 6.9e-12 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 457 - 551 6.6e-32 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1214
AatII GACGTC 1 cut(s) 147
Acc36I ACCTGC 1 cut(s) 1214
AccI GTMKAC 2 cut(s) 1411, 2081
AclWI GGATC 3 cut(s) 335, 1693, 2994
AcoI YGGCCR 1 cut(s) 2713
AcsI RAATTY 9 cut(s) 491, 814, 958, 1264, 1694, 2114, 2124, 2816, 2895
AcuI CTGAAG 5 cut(s) 30, 1674, 1808, 3033, 3060
AcyI GRCGYC 3 cut(s) 144, 169, 402
AfaI GTAC 7 cut(s) 163, 562, 1009, 1241, 2140, 2725, 2766
AfiI CCNNNNNNNGG 7 cut(s) 164, 268, 346, 429, 458, 1430, 2796
AflII CTTAAG 2 cut(s) 1028, 1913
AhlI ACTAGT 2 cut(s) 1840, 2387
AjuI GAANNNNNNNTTGG 2 cut(s) 2924, 2956
Alw21I GWGCWC 5 cut(s) 280, 386, 2053, 2211, 2290
Alw26I GTCTC 3 cut(s) 976, 1511, 1846
Alw44I GTGCAC 1 cut(s) 2049
AlwI GGATC 3 cut(s) 335, 1693, 2994
AlwNI CAGNNNCTG 2 cut(s) 272, 1229
AoxI GGCC 4 cut(s) 446, 1139, 1783, 2713
ApaLI GTGCAC 1 cut(s) 2049
ApeKI GCWGC 7 cut(s) 118, 1469, 1577, 1655, 2059, 2486, 2604
ApoI RAATTY 9 cut(s) 491, 814, 958, 1264, 1694, 2114, 2124, 2816, 2895
ArsI GACNNNNNNTTYG 2 cut(s) 1718, 1750
Asp700I GAANNNNTTC 2 cut(s) 855, 1605
AspLEI GCGC 1 cut(s) 928
AspS9I GGNCC 5 cut(s) 375, 420, 447, 1139, 2952
AsuC2I CCSGG 6 cut(s) 287, 341, 365, 379, 424, 452
AsuHPI GGTGA 2 cut(s) 139, 2947
AsuII TTCGAA 1 cut(s) 1956
AvaII GGWCC 3 cut(s) 375, 420, 2952
AxyI CCTNAGG 1 cut(s) 2421
BaeGI GKGCMC 2 cut(s) 1840, 2053
BanII GRGCYC 1 cut(s) 386
BarI GAAGNNNNNNTAC 2 cut(s) 687, 719
BauI CACGAG 1 cut(s) 2466
Bbv12I GWGCWC 5 cut(s) 280, 386, 2053, 2211, 2290
BbvI GCAGC 7 cut(s) 105, 1481, 1564, 1642, 2046, 2498, 2616
BccI CCATC 4 cut(s) 423, 944, 1106, 2349
BceAI ACGGC 1 cut(s) 2700
BcgI CGANNNNNNTGC 6 cut(s) 97, 131, 1878, 1912, 2597, 2631
BciVI GTATCC 2 cut(s) 541, 3025
BclI TGATCA 2 cut(s) 1308, 1567
BcnI CCSGG 6 cut(s) 287, 341, 365, 379, 424, 452
BcoDI GTCTC 3 cut(s) 976, 1511, 1846
BcuI ACTAGT 2 cut(s) 1840, 2387
BfaI CTAG 4 cut(s) 1587, 1841, 2388, 2595
BfmI CTRYAG 3 cut(s) 151, 944, 3054
BfrI CTTAAG 2 cut(s) 1028, 1913
BfuAI ACCTGC 1 cut(s) 1214
BfuI GTATCC 2 cut(s) 541, 3025
BmcAI AGTACT 3 cut(s) 1009, 1241, 2140
Bme1390I CCNGG 6 cut(s) 287, 341, 365, 379, 424, 452
Bme18I GGWCC 3 cut(s) 375, 420, 2952
BmgT120I GGNCC 5 cut(s) 375, 420, 447, 1139, 2952
BmiI GGNNCC 3 cut(s) 377, 449, 2953
BmrFI CCNGG 6 cut(s) 287, 341, 365, 379, 424, 452
BoxI GACNNNNGTC 2 cut(s) 373, 873
BpmI CTGGAG 1 cut(s) 2070
Bpu14I TTCGAA 1 cut(s) 1956
BpuEI CTTGAG 1 cut(s) 1793
BpuMI CCSGG 6 cut(s) 287, 341, 365, 379, 424, 452
BsaAI YACGTR 1 cut(s) 2723
BsaBI GATNNNNATC 2 cut(s) 15, 433
BsaHI GRCGYC 3 cut(s) 144, 169, 402
BsaJI CCNNGG 8 cut(s) 364, 423, 450, 594, 1150, 1581, 2686, 2955
BsaXI ACNNNNNCTCC 6 cut(s) 286, 316, 2061, 2091, 2770, 2800
Bsc4I CCNNNNNNNGG 7 cut(s) 164, 268, 346, 429, 458, 1430, 2796
Bse1I ACTGG 2 cut(s) 127, 902
Bse21I CCTNAGG 1 cut(s) 2421
Bse8I GATNNNNATC 2 cut(s) 15, 433
BseDI CCNNGG 8 cut(s) 364, 423, 450, 594, 1150, 1581, 2686, 2955
BseGI GGATG 7 cut(s) 434, 936, 1306, 2169, 2395, 2976, 3004
BseJI GATNNNNATC 2 cut(s) 15, 433
BseLI CCNNNNNNNGG 7 cut(s) 164, 268, 346, 429, 458, 1430, 2796
BseMII CTCAG 6 cut(s) 1041, 1251, 1681, 2394, 2565, 2966
BseNI ACTGG 2 cut(s) 127, 902
BseRI GAGGAG 2 cut(s) 272, 294
BseSI GKGCMC 2 cut(s) 1840, 2053
BseXI GCAGC 7 cut(s) 105, 1481, 1564, 1642, 2046, 2498, 2616
BsgI GTGCAG 1 cut(s) 1488
Bsh1285I CGRYCG 3 cut(s) 13, 262, 1340
BshFI GGCC 4 cut(s) 448, 1141, 1785, 2715
BsiEI CGRYCG 3 cut(s) 13, 262, 1340
BsiHKAI GWGCWC 5 cut(s) 280, 386, 2053, 2211, 2290
BsiSI CCGG 7 cut(s) 173, 286, 341, 364, 379, 423, 452
BslFI GGGAC 3 cut(s) 361, 381, 2965
BslI CCNNNNNNNGG 7 cut(s) 164, 268, 346, 429, 458, 1430, 2796
BsmAI GTCTC 3 cut(s) 976, 1511, 1846
BsmFI GGGAC 3 cut(s) 361, 381, 2965
BsmI GAATGC 2 cut(s) 1901, 2620
BsnI GGCC 4 cut(s) 448, 1141, 1785, 2715
Bsp119I TTCGAA 1 cut(s) 1956
Bsp1286I GDGCHC 6 cut(s) 280, 386, 1840, 2053, 2211, 2290
Bsp19I CCATGG 1 cut(s) 1581
BspANI GGCC 4 cut(s) 448, 1141, 1785, 2715
BspCNI CTCAG 6 cut(s) 1042, 1252, 1680, 2395, 2566, 2967
BspLI GGNNCC 3 cut(s) 377, 449, 2953
BspMAI CTGCAG 1 cut(s) 948
BspMI ACCTGC 1 cut(s) 1214
BspPI GGATC 3 cut(s) 335, 1693, 2994
BspQI GCTCTTC 1 cut(s) 350
BspT104I TTCGAA 1 cut(s) 1956
BspTI CTTAAG 2 cut(s) 1028, 1913
BsrI ACTGG 2 cut(s) 127, 902
BssECI CCNNGG 8 cut(s) 364, 423, 450, 594, 1150, 1581, 2686, 2955
BssNAI GTATAC 1 cut(s) 2082
BssNI GRCGYC 3 cut(s) 144, 169, 402
BssSI CACGAG 1 cut(s) 2466
BssT1I CCWWGG 2 cut(s) 1150, 1581
Bst1107I GTATAC 1 cut(s) 2082
Bst2BI CACGAG 1 cut(s) 2466
Bst6I CTCTTC 5 cut(s) 350, 678, 690, 2493, 2631
BstACI GRCGYC 3 cut(s) 144, 169, 402
BstAFI CTTAAG 2 cut(s) 1028, 1913
BstAPI GCANNNNNTGC 2 cut(s) 1076, 2048
BstBAI YACGTR 1 cut(s) 2723
BstBI TTCGAA 1 cut(s) 1956
BstC8I GCNNGC 1 cut(s) 315
BstDEI CTNAG 9 cut(s) 1050, 1260, 1659, 1667, 2403, 2421, 2548, 2574, 2975
BstDSI CCRYGG 2 cut(s) 1581, 2686
BstF5I GGATG 7 cut(s) 434, 936, 1306, 2169, 2395, 2976, 3004
BstHHI GCGC 1 cut(s) 928
BstMAI GTCTC 3 cut(s) 976, 1511, 1846
BstMCI CGRYCG 3 cut(s) 13, 262, 1340
BstMWI GCNNNNNNNGC 9 cut(s) 35, 319, 445, 1061, 1076, 1583, 1747, 2048, 2454
BstNSI RCATGY 3 cut(s) 659, 1070, 1723
BstPAI GACNNNNGTC 2 cut(s) 373, 873
BstSCI CCNGG 6 cut(s) 285, 339, 363, 377, 422, 450
BstSFI CTRYAG 3 cut(s) 151, 944, 3054
BstSLI GKGCMC 2 cut(s) 1840, 2053
BstV1I GCAGC 7 cut(s) 105, 1481, 1564, 1642, 2046, 2498, 2616
BstX2I RGATCY 1 cut(s) 1685
BstYI RGATCY 1 cut(s) 1685
BstZ17I GTATAC 1 cut(s) 2082
Bsu36I CCTNAGG 1 cut(s) 2421
BsuI GTATCC 2 cut(s) 541, 3025
BsuRI GGCC 4 cut(s) 448, 1141, 1785, 2715
BtgI CCRYGG 2 cut(s) 1581, 2686
BtgZI GCGATG 2 cut(s) 1607, 2368
BtsCI GGATG 7 cut(s) 434, 936, 1306, 2169, 2395, 2976, 3004
BtsI GCAGTG 3 cut(s) 273, 623, 1863
BtsIMutI CAGTG 5 cut(s) 54, 273, 623, 1863, 2571
BveI ACCTGC 1 cut(s) 1214
Cac8I GCNNGC 1 cut(s) 315
CaiI CAGNNNCTG 2 cut(s) 272, 1229
CfoI GCGC 1 cut(s) 928
Cfr13I GGNCC 5 cut(s) 375, 420, 447, 1139, 2952
CseI GACGC 3 cut(s) 158, 391, 863
Csp6I GTAC 7 cut(s) 162, 561, 1008, 1240, 2139, 2724, 2765
CviQI GTAC 7 cut(s) 162, 561, 1008, 1240, 2139, 2724, 2765
DdeI CTNAG 9 cut(s) 1050, 1260, 1659, 1667, 2403, 2421, 2548, 2574, 2975
DraI TTTAAA 1 cut(s) 2349
EaeI YGGCCR 1 cut(s) 2713
Eam1104I CTCTTC 5 cut(s) 350, 678, 690, 2493, 2631
EarI CTCTTC 5 cut(s) 350, 678, 690, 2493, 2631
EciI GGCGGA 2 cut(s) 116, 297
Ecl136II GAGCTC 1 cut(s) 384
Eco130I CCWWGG 2 cut(s) 1150, 1581
Eco24I GRGCYC 1 cut(s) 386
Eco32I GATATC 1 cut(s) 1991
Eco47I GGWCC 3 cut(s) 375, 420, 2952
Eco53kI GAGCTC 1 cut(s) 384
Eco57I CTGAAG 5 cut(s) 30, 1674, 1808, 3033, 3060
Eco81I CCTNAGG 1 cut(s) 2421
EcoICRI GAGCTC 1 cut(s) 384
EcoO109I RGGNCCY 2 cut(s) 375, 2952
EcoRI GAATTC 2 cut(s) 1264, 2124
EcoRV GATATC 1 cut(s) 1991
EcoT14I CCWWGG 2 cut(s) 1150, 1581
EcoT22I ATGCAT 3 cut(s) 889, 1000, 1901
EcoT38I GRGCYC 1 cut(s) 386
ErhI CCWWGG 2 cut(s) 1150, 1581
FaqI GGGAC 3 cut(s) 361, 381, 2965
FauI CCCGC 1 cut(s) 1818
FauNDI CATATG 1 cut(s) 2055
FbaI TGATCA 2 cut(s) 1308, 1567
FblI GTMKAC 2 cut(s) 1411, 2081
FokI GGATG 7 cut(s) 441, 923, 1313, 2176, 2382, 2983, 3011
FriOI GRGCYC 1 cut(s) 386
FspBI CTAG 4 cut(s) 1587, 1841, 2388, 2595
GlaI GCGC 1 cut(s) 927
GsuI CTGGAG 1 cut(s) 2070
HaeIII GGCC 4 cut(s) 448, 1141, 1785, 2715
HapII CCGG 7 cut(s) 173, 286, 341, 364, 379, 423, 452
HgaI GACGC 3 cut(s) 158, 391, 863
HhaI GCGC 1 cut(s) 928
Hin1I GRCGYC 3 cut(s) 144, 169, 402
Hin6I GCGC 1 cut(s) 926
HinP1I GCGC 1 cut(s) 926
HincII GTYRAC 3 cut(s) 1412, 2505, 3070
HindII GTYRAC 3 cut(s) 1412, 2505, 3070
HindIII AAGCTT 3 cut(s) 2226, 3015, 3042
HpaI GTTAAC 1 cut(s) 2505
HpaII CCGG 7 cut(s) 173, 286, 341, 364, 379, 423, 452
HphI GGTGA 2 cut(s) 139, 2947
Hpy188III TCNNGA 8 cut(s) 14, 231, 352, 860, 1772, 1994, 2087, 2468
Hpy99I CGWCG 3 cut(s) 146, 260, 879
HpyAV CCTTC 6 cut(s) 340, 845, 1159, 1783, 2790, 2926
HpyCH4IV ACGT 5 cut(s) 144, 407, 2267, 2722, 2961
HpyF10VI GCNNNNNNNGC 9 cut(s) 35, 319, 445, 1061, 1076, 1583, 1747, 2048, 2454
HpyF3I CTNAG 9 cut(s) 1050, 1260, 1659, 1667, 2403, 2421, 2548, 2574, 2975
HpySE526I ACGT 5 cut(s) 144, 407, 2267, 2722, 2961
Hsp92I GRCGYC 3 cut(s) 144, 169, 402
HspAI GCGC 1 cut(s) 926
Ksp22I TGATCA 2 cut(s) 1308, 1567
KspAI GTTAAC 1 cut(s) 2505
LguI GCTCTTC 1 cut(s) 350
LmnI GCTCC 3 cut(s) 381, 2069, 2791
Lsp1109I GCAGC 7 cut(s) 105, 1481, 1564, 1642, 2046, 2498, 2616
MaeI CTAG 4 cut(s) 1587, 1841, 2388, 2595
MaeII ACGT 5 cut(s) 144, 407, 2267, 2722, 2961
MaeIII GTNAC 4 cut(s) 145, 403, 820, 904
MfeI CAATTG 3 cut(s) 690, 1714, 2709
MflI RGATCY 1 cut(s) 1685
MhlI GDGCHC 6 cut(s) 280, 386, 1840, 2053, 2211, 2290
MlyI GAGTC 3 cut(s) 994, 2435, 2884
MmeI TCCRAC 1 cut(s) 1312
Mph1103I ATGCAT 3 cut(s) 889, 1000, 1901
MroXI GAANNNNTTC 2 cut(s) 855, 1605
MslI CAYNNNNRTG 4 cut(s) 69, 993, 1071, 2521
MspCI CTTAAG 2 cut(s) 1028, 1913
MspI CCGG 7 cut(s) 173, 286, 341, 364, 379, 423, 452
MspR9I CCNGG 6 cut(s) 287, 341, 365, 379, 424, 452
MunI CAATTG 3 cut(s) 690, 1714, 2709
Mva1269I GAATGC 2 cut(s) 1901, 2620
MwoI GCNNNNNNNGC 9 cut(s) 35, 319, 445, 1061, 1076, 1583, 1747, 2048, 2454
NciI CCSGG 6 cut(s) 287, 341, 365, 379, 424, 452
NcoI CCATGG 1 cut(s) 1581
NdeI CATATG 1 cut(s) 2055
NlaIV GGNNCC 3 cut(s) 377, 449, 2953
NmuCI GTSAC 3 cut(s) 145, 403, 820
NsiI ATGCAT 3 cut(s) 889, 1000, 1901
NspI RCATGY 3 cut(s) 659, 1070, 1723
NspV TTCGAA 1 cut(s) 1956
PaqCI CACCTGC 1 cut(s) 1214
PciSI GCTCTTC 1 cut(s) 350
PctI GAATGC 2 cut(s) 1901, 2620
PdmI GAANNNNTTC 2 cut(s) 855, 1605
PfoI TCCNGGA 2 cut(s) 339, 377
Ple19I CGATCG 2 cut(s) 13, 1340
PleI GAGTC 3 cut(s) 993, 2434, 2884
PpsI GAGTC 3 cut(s) 993, 2434, 2884
Ppu21I YACGTR 1 cut(s) 2723
PpuMI RGGWCCY 2 cut(s) 375, 2952
PshAI GACNNNNGTC 2 cut(s) 373, 873
Psp124BI GAGCTC 1 cut(s) 386
Psp5II RGGWCCY 2 cut(s) 375, 2952
PspN4I GGNNCC 3 cut(s) 377, 449, 2953
PspPI GGNCC 5 cut(s) 375, 420, 447, 1139, 2952
PspPPI RGGWCCY 2 cut(s) 375, 2952
PstI CTGCAG 1 cut(s) 948
PstNI CAGNNNCTG 2 cut(s) 272, 1229
PsuI RGATCY 1 cut(s) 1685
PvuI CGATCG 2 cut(s) 13, 1340
RsaI GTAC 7 cut(s) 163, 562, 1009, 1241, 2140, 2725, 2766
RsaNI GTAC 7 cut(s) 162, 561, 1008, 1240, 2139, 2724, 2765
RseI CAYNNNNRTG 4 cut(s) 69, 993, 1071, 2521
SacI GAGCTC 1 cut(s) 386
SalI GTCGAC 1 cut(s) 1410
SapI GCTCTTC 1 cut(s) 350
Sau96I GGNCC 5 cut(s) 375, 420, 447, 1139, 2952
ScaI AGTACT 3 cut(s) 1009, 1241, 2140
SchI GAGTC 3 cut(s) 994, 2435, 2884
ScrFI CCNGG 6 cut(s) 287, 341, 365, 379, 424, 452
SduI GDGCHC 6 cut(s) 280, 386, 1840, 2053, 2211, 2290
SfcI CTRYAG 3 cut(s) 151, 944, 3054
SfuI TTCGAA 1 cut(s) 1956
SinI GGWCC 3 cut(s) 375, 420, 2952
SmiMI CAYNNNNRTG 4 cut(s) 69, 993, 1071, 2521
SmlI CTYRAG 3 cut(s) 1028, 1772, 1913
SmoI CTYRAG 3 cut(s) 1028, 1772, 1913
SpeI ACTAGT 2 cut(s) 1840, 2387
SspI AATATT 1 cut(s) 1922
SspMI CTAG 4 cut(s) 1587, 1841, 2388, 2595
SstI GAGCTC 1 cut(s) 386
StyD4I CCNGG 6 cut(s) 285, 339, 363, 377, 422, 450
StyI CCWWGG 2 cut(s) 1150, 1581
TaiI ACGT 5 cut(s) 147, 410, 2270, 2725, 2964
TaqII GACCGA 1 cut(s) 276
TatI WGTACW 3 cut(s) 1007, 1239, 2138
TauI GCSGC 5 cut(s) 313, 363, 399, 402, 2460
TscAI CASTG 5 cut(s) 54, 273, 623, 1870, 2578
TseFI GTSAC 3 cut(s) 145, 403, 820
TseI GCWGC 7 cut(s) 118, 1469, 1577, 1655, 2059, 2486, 2604
Tsp45I GTSAC 3 cut(s) 145, 403, 820
TspGWI ACGGA 2 cut(s) 385, 2675
TspRI CASTG 5 cut(s) 54, 273, 623, 1870, 2578
Vha464I CTTAAG 2 cut(s) 1028, 1913
VneI GTGCAC 1 cut(s) 2049
VpaK11BI GGWCC 3 cut(s) 375, 420, 2952
XapI RAATTY 9 cut(s) 491, 814, 958, 1264, 1694, 2114, 2124, 2816, 2895
XceI RCATGY 3 cut(s) 659, 1070, 1723
XmiI GTMKAC 2 cut(s) 1411, 2081
XmnI GAANNNNTTC 2 cut(s) 855, 1605
XspI CTAG 4 cut(s) 1587, 1841, 2388, 2595
ZraI GACGTC 1 cut(s) 145
ZrmI AGTACT 3 cut(s) 1009, 1241, 2140
Zsp2I ATGCAT 3 cut(s) 889, 1000, 1901
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.