Rh4BG419300

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000325
Physical Location & Seq
Forward (+)
56554950 .. 56556559
1610 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG419300.1

Sequence Viewer

Length: 387 bp
ATGAGTATTACTAGTTATCATCCTACTGAGATTCATGGTAATCCTAAGGAGTCGATTGGCAGACGGTATGGCTACTTGTGCCGCACTTCTCGTGATATTTTAACTGTTGCAGCAGATGATGAAGAGTTAACGAGATATGCACATGAATGTTTGGTTGAGATGCTCAAAGGCTTAGAGTTAATAAAGAAAAATCGCACTGAGAAAGAGGGGAGAAGTTCTAGTGATAGCAGCGAAGTGAATGCTACTTTTGGTCAAAGTGAAGAGGTTGAGGGAATAGTTCAATCTAATGCTTGTGAAACAACAATTATCTGTGGAGTTAAAAGAAAAGCTACAATTGGCCGTCCACGTACCAGATTCAAAGACCCGGCTGAAAGAAAAAAAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

128

Amino Acids

14.44

Weight (kDa)

7.67

Isoelectric Point (pI)

58.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 82
AcoI YGGCCR 1 cut(s) 337
AfaI GTAC 1 cut(s) 349
AgsI TTSAA 2 cut(s) 281, 358
AhlI ACTAGT 1 cut(s) 11
AluBI AGCT 1 cut(s) 329
AluI AGCT 1 cut(s) 329
AoxI GGCC 1 cut(s) 337
ApeKI GCWGC 2 cut(s) 110, 228
AsuC2I CCSGG 1 cut(s) 365
AxyI CCTNAGG 1 cut(s) 45
BauI CACGAG 1 cut(s) 90
BbvI GCAGC 2 cut(s) 122, 240
BceAI ACGGC 1 cut(s) 324
BcgI CGANNNNNNTGC 2 cut(s) 221, 255
BcnI CCSGG 1 cut(s) 365
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 2 cut(s) 12, 219
BisI GCNGC 3 cut(s) 82, 111, 229
BlsI GCNGC 3 cut(s) 83, 112, 230
Bme1390I CCNGG 1 cut(s) 365
BmrFI CCNGG 1 cut(s) 365
BmsI GCATC 1 cut(s) 150
BpuMI CCSGG 1 cut(s) 365
BsaAI YACGTR 1 cut(s) 347
Bse21I CCTNAGG 1 cut(s) 45
BseGI GGATG 1 cut(s) 19
BseMII CTCAG 2 cut(s) 18, 189
BseXI GCAGC 2 cut(s) 122, 240
BshFI GGCC 1 cut(s) 339
BsiSI CCGG 1 cut(s) 365
BsmI GAATGC 1 cut(s) 244
BsnI GGCC 1 cut(s) 339
BspACI CCGC 1 cut(s) 82
BspANI GGCC 1 cut(s) 339
BspCNI CTCAG 2 cut(s) 19, 190
BssSI CACGAG 1 cut(s) 90
Bst2BI CACGAG 1 cut(s) 90
Bst4CI ACNGT 2 cut(s) 66, 106
Bst6I CTCTTC 2 cut(s) 117, 255
BstBAI YACGTR 1 cut(s) 347
BstDEI CTNAG 4 cut(s) 27, 45, 172, 198
BstF5I GGATG 1 cut(s) 19
BstMWI GCNNNNNNNGC 1 cut(s) 78
BstSCI CCNGG 1 cut(s) 363
BstV1I GCAGC 2 cut(s) 122, 240
Bsu36I CCTNAGG 1 cut(s) 45
BsuRI GGCC 1 cut(s) 339
BtsCI GGATG 1 cut(s) 19
BtsIMutI CAGTG 1 cut(s) 195
Csp6I GTAC 1 cut(s) 348
CviAII CATG 2 cut(s) 35, 143
CviJI RGCY 5 cut(s) 72, 171, 329, 339, 368
CviKI_1 RGCY 5 cut(s) 72, 171, 329, 339, 368
CviQI GTAC 1 cut(s) 348
DdeI CTNAG 4 cut(s) 27, 45, 172, 198
EaeI YGGCCR 1 cut(s) 337
Eam1104I CTCTTC 2 cut(s) 117, 255
EarI CTCTTC 2 cut(s) 117, 255
Eco81I CCTNAGG 1 cut(s) 45
FaeI CATG 2 cut(s) 38, 146
FaiI YATR 4 cut(s) 36, 69, 138, 144
FatI CATG 2 cut(s) 34, 142
Fnu4HI GCNGC 3 cut(s) 82, 111, 229
FokI GGATG 1 cut(s) 6
Fsp4HI GCNGC 3 cut(s) 82, 111, 229
FspBI CTAG 2 cut(s) 12, 219
GluI GCNGC 3 cut(s) 82, 111, 229
HaeIII GGCC 1 cut(s) 339
HapII CCGG 1 cut(s) 365
Hin1II CATG 2 cut(s) 38, 146
HincII GTYRAC 1 cut(s) 129
HindII GTYRAC 1 cut(s) 129
HinfI GANTC 3 cut(s) 31, 50, 354
HpaI GTTAAC 1 cut(s) 129
HpaII CCGG 1 cut(s) 365
Hpy166II GTNNAC 2 cut(s) 129, 344
Hpy188III TCNNGA 1 cut(s) 92
Hpy8I GTNNAC 2 cut(s) 129, 344
HpyCH4III ACNGT 2 cut(s) 66, 106
HpyCH4IV ACGT 1 cut(s) 346
HpyCH4V TGCA 2 cut(s) 110, 140
HpyF10VI GCNNNNNNNGC 1 cut(s) 78
HpyF3I CTNAG 4 cut(s) 27, 45, 172, 198
HpySE526I ACGT 1 cut(s) 346
Hsp92II CATG 2 cut(s) 38, 146
KspAI GTTAAC 1 cut(s) 129
LpnPI CCDG 2 cut(s) 364, 378
Lsp1109I GCAGC 2 cut(s) 122, 240
LweI GCATC 1 cut(s) 150
MaeI CTAG 2 cut(s) 12, 219
MaeII ACGT 1 cut(s) 346
MboII GAAGA 2 cut(s) 134, 272
MfeI CAATTG 1 cut(s) 333
MluCI AATT 2 cut(s) 303, 333
MlyI GAGTC 1 cut(s) 59
MnlI CCTC 3 cut(s) 199, 256, 262
MseI TTAA 4 cut(s) 101, 128, 179, 318
MslI CAYNNNNRTG 1 cut(s) 145
MspI CCGG 1 cut(s) 365
MspR9I CCNGG 1 cut(s) 365
MunI CAATTG 1 cut(s) 333
Mva1269I GAATGC 1 cut(s) 244
MwoI GCNNNNNNNGC 1 cut(s) 78
NciI CCSGG 1 cut(s) 365
NlaIII CATG 2 cut(s) 38, 146
PctI GAATGC 1 cut(s) 244
PfeI GAWTC 2 cut(s) 31, 354
PkrI GCNGC 3 cut(s) 83, 112, 230
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
Ppu21I YACGTR 1 cut(s) 347
RsaI GTAC 1 cut(s) 349
RsaNI GTAC 1 cut(s) 348
RseI CAYNNNNRTG 1 cut(s) 145
SaqAI TTAA 4 cut(s) 101, 128, 179, 318
SatI GCNGC 3 cut(s) 82, 111, 229
SchI GAGTC 1 cut(s) 59
ScrFI CCNGG 1 cut(s) 365
SetI ASST 3 cut(s) 267, 331, 349
SfaNI GCATC 1 cut(s) 150
SmiMI CAYNNNNRTG 1 cut(s) 145
SpeI ACTAGT 1 cut(s) 11
Sse9I AATT 2 cut(s) 303, 333
SsiI CCGC 1 cut(s) 82
SspMI CTAG 2 cut(s) 12, 219
StyD4I CCNGG 1 cut(s) 363
TaaI ACNGT 2 cut(s) 66, 106
TaiI ACGT 1 cut(s) 349
TaqI TCGA 1 cut(s) 53
TasI AATT 2 cut(s) 303, 333
TauI GCSGC 1 cut(s) 84
TfiI GAWTC 2 cut(s) 31, 354
Tru1I TTAA 4 cut(s) 101, 128, 179, 318
Tru9I TTAA 4 cut(s) 101, 128, 179, 318
TscAI CASTG 1 cut(s) 202
TseI GCWGC 2 cut(s) 110, 228
TspDTI ATGAA 3 cut(s) 23, 135, 159
TspRI CASTG 1 cut(s) 202
XspI CTAG 2 cut(s) 12, 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.