Rh1DG166300

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000325
Physical Location & Seq
Forward (+)
34185056 .. 34185789
734 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG166300.1

Sequence Viewer

Length: 567 bp
ATGCAGCAAAAGTGTACACACCAGCAGTGTTTCAATGGTTCCAAGTTGAGTTGTGTAAAGCTCATGACTATTCTCTCGACAAATAATATCAAGACCATTCCTAGTCAACACATCTCAAAGAGATGGACAAAGGATATTAGAGATCAAAGAGCAAAGGTGTCTTGTCCAAATGCAAATGATGATGACCAGAAAGCAAAAATAGCAAGGCTTTACAGAGAATTGGCTCGATTACATACTGAACTTGCAACAAGTACTGCTGAATCTGATGAAGCTTATGAAATTGCTACAGTGGCCCTTCACAAGACATTAGCAGATGTTAAGGCATCTTTAAAGAAAAAGATCAATCAAGAAGCACCTCAAGTTGCCTCACCGATCATCAATAGTGCACTTGAGGTTATTTTTGATAATTTTGATGATCATAGGGTCAGAGGAATCAAGGTTAAAGAAAGAATTGTTCGTAAGGAGGAATTTGTTAGACCAAAGAATGCTCTGGAAAAGCTTTTAGGAAACAAAAGGCATAAGAAAGAGGTAGATACTTATCGAGACACCAAAGAGAACCAGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

188

Amino Acids

21.58

Weight (kDa)

9.55

Isoelectric Point (pI)

31.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 467
AfaI GTAC 2 cut(s) 16, 253
AgsI TTSAA 1 cut(s) 34
AluBI AGCT 3 cut(s) 61, 272, 499
AluI AGCT 3 cut(s) 61, 272, 499
Alw21I GWGCWC 1 cut(s) 388
Alw26I GTCTC 1 cut(s) 537
Alw44I GTGCAC 1 cut(s) 384
AoxI GGCC 1 cut(s) 291
ApaLI GTGCAC 1 cut(s) 384
ApeKI GCWGC 1 cut(s) 4
ApoI RAATTY 1 cut(s) 467
AspS9I GGNCC 1 cut(s) 292
AsuHPI GGTGA 1 cut(s) 360
BaeGI GKGCMC 1 cut(s) 388
Bbv12I GWGCWC 1 cut(s) 388
BbvI GCAGC 1 cut(s) 16
BccI CCATC 1 cut(s) 117
BclI TGATCA 1 cut(s) 415
BcoDI GTCTC 1 cut(s) 537
BfaI CTAG 1 cut(s) 102
BfmI CTRYAG 1 cut(s) 285
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
BmcAI AGTACT 1 cut(s) 253
BmgT120I GGNCC 1 cut(s) 292
BmiI GGNNCC 1 cut(s) 40
BmsI GCATC 1 cut(s) 332
BpuEI CTTGAG 2 cut(s) 342, 410
BsaBI GATNNNNATC 1 cut(s) 537
Bse8I GATNNNNATC 1 cut(s) 537
BseJI GATNNNNATC 1 cut(s) 537
BseSI GKGCMC 1 cut(s) 388
BseXI GCAGC 1 cut(s) 16
BshFI GGCC 1 cut(s) 293
BsiHKAI GWGCWC 1 cut(s) 388
BsmAI GTCTC 1 cut(s) 537
BsmI GAATGC 1 cut(s) 490
BsnI GGCC 1 cut(s) 293
Bsp1286I GDGCHC 1 cut(s) 388
Bsp1407I TGTACA 1 cut(s) 14
Bsp143I GATC 4 cut(s) 142, 339, 372, 415
BspANI GGCC 1 cut(s) 293
BspHI TCATGA 1 cut(s) 63
BspLI GGNNCC 1 cut(s) 40
BsrGI TGTACA 1 cut(s) 14
BssMI GATC 4 cut(s) 142, 339, 372, 415
Bst4CI ACNGT 1 cut(s) 289
BstAUI TGTACA 1 cut(s) 14
BstKTI GATC 4 cut(s) 145, 342, 375, 418
BstMAI GTCTC 1 cut(s) 537
BstMBI GATC 4 cut(s) 142, 339, 372, 415
BstMWI GCNNNNNNNGC 2 cut(s) 200, 290
BstSFI CTRYAG 1 cut(s) 285
BstSLI GKGCMC 1 cut(s) 388
BstV1I GCAGC 1 cut(s) 16
BsuRI GGCC 1 cut(s) 293
BtsI GCAGTG 1 cut(s) 32
BtsIMutI CAGTG 2 cut(s) 32, 294
CciI TCATGA 1 cut(s) 63
Cfr13I GGNCC 1 cut(s) 292
Csp6I GTAC 2 cut(s) 15, 252
CviAII CATG 1 cut(s) 64
CviJI RGCY 6 cut(s) 61, 208, 224, 272, 293, 499
CviKI_1 RGCY 6 cut(s) 61, 208, 224, 272, 293, 499
CviQI GTAC 2 cut(s) 15, 252
DpnI GATC 4 cut(s) 144, 341, 374, 417
DpnII GATC 4 cut(s) 142, 339, 372, 415
DraI TTTAAA 1 cut(s) 330
FaeI CATG 1 cut(s) 67
FaiI YATR 5 cut(s) 65, 234, 276, 420, 519
FatI CATG 1 cut(s) 63
FbaI TGATCA 1 cut(s) 415
Fnu4HI GCNGC 1 cut(s) 5
Fsp4HI GCNGC 1 cut(s) 5
FspBI CTAG 1 cut(s) 102
GluI GCNGC 1 cut(s) 5
HaeIII GGCC 1 cut(s) 293
Hin1II CATG 1 cut(s) 67
HincII GTYRAC 1 cut(s) 107
HindII GTYRAC 1 cut(s) 107
HindIII AAGCTT 2 cut(s) 270, 497
HinfI GANTC 2 cut(s) 260, 432
HphI GGTGA 1 cut(s) 360
Hpy166II GTNNAC 4 cut(s) 15, 17, 107, 386
Hpy188I TCNGA 2 cut(s) 265, 428
Hpy188III TCNNGA 6 cut(s) 64, 76, 91, 347, 491, 542
Hpy8I GTNNAC 4 cut(s) 15, 17, 107, 386
HpyAV CCTTC 1 cut(s) 305
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4V TGCA 4 cut(s) 4, 173, 245, 386
HpyF10VI GCNNNNNNNGC 2 cut(s) 200, 290
Hsp92II CATG 1 cut(s) 67
Ksp22I TGATCA 1 cut(s) 415
Kzo9I GATC 4 cut(s) 142, 339, 372, 415
LpnPI CCDG 3 cut(s) 35, 200, 476
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 1 cut(s) 332
MaeI CTAG 1 cut(s) 102
MalI GATC 4 cut(s) 144, 341, 374, 417
MboI GATC 4 cut(s) 142, 339, 372, 415
MhlI GDGCHC 1 cut(s) 388
MluCI AATT 6 cut(s) 218, 279, 406, 450, 467, 562
MnlI CCTC 6 cut(s) 366, 376, 385, 422, 457, 520
MseI TTAA 3 cut(s) 318, 329, 441
Mva1269I GAATGC 1 cut(s) 490
MwoI GCNNNNNNNGC 2 cut(s) 200, 290
NdeII GATC 4 cut(s) 142, 339, 372, 415
NlaIII CATG 1 cut(s) 67
NlaIV GGNNCC 1 cut(s) 40
PagI TCATGA 1 cut(s) 63
PctI GAATGC 1 cut(s) 490
PfeI GAWTC 2 cut(s) 260, 432
PkrI GCNGC 1 cut(s) 6
PspN4I GGNNCC 1 cut(s) 40
PspPI GGNCC 1 cut(s) 292
RsaI GTAC 2 cut(s) 16, 253
RsaNI GTAC 2 cut(s) 15, 252
SaqAI TTAA 3 cut(s) 318, 329, 441
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 4 cut(s) 142, 339, 372, 415
Sau96I GGNCC 1 cut(s) 292
ScaI AGTACT 1 cut(s) 253
SduI GDGCHC 1 cut(s) 388
SetI ASST 8 cut(s) 63, 159, 274, 358, 396, 441, 501, 531
SfaNI GCATC 1 cut(s) 332
SfcI CTRYAG 1 cut(s) 285
SmlI CTYRAG 2 cut(s) 357, 389
SmoI CTYRAG 2 cut(s) 357, 389
Sse9I AATT 6 cut(s) 218, 279, 406, 450, 467, 562
SspMI CTAG 1 cut(s) 102
TaaI ACNGT 1 cut(s) 289
TaqI TCGA 3 cut(s) 77, 226, 541
TasI AATT 6 cut(s) 218, 279, 406, 450, 467, 562
TatI WGTACW 2 cut(s) 14, 251
TfiI GAWTC 2 cut(s) 260, 432
Tru1I TTAA 3 cut(s) 318, 329, 441
Tru9I TTAA 3 cut(s) 318, 329, 441
TscAI CASTG 2 cut(s) 32, 294
TseI GCWGC 1 cut(s) 4
TspDTI ATGAA 2 cut(s) 282, 291
TspRI CASTG 2 cut(s) 32, 294
VneI GTGCAC 1 cut(s) 384
XapI RAATTY 1 cut(s) 467
XspI CTAG 1 cut(s) 102
ZrmI AGTACT 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.