Rorug05G0467000

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000325
Physical Location & Seq
Reverse (-)
64321046 .. 64321539
494 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0467000.1

Sequence Viewer

Length: 387 bp
ATGTCCGGCGTGTGGATATTCGACAAAAACGGCGTCACTCGACTGGTCACAAACCCGACCCGAGAATCCTTCGAGCAAAAAGAACCGCCCTATCCGGGTACAGCGACCGCACCCGGAGCTCGACCCCGACTATTGATATACCTTCCAGCCAACCAAGTCATCCGGTCCTATGCTGAACTCGAGCAGCGACTCACTGAACTCGGCTGGACTCGCTACCGGCCCAACTCATTCTGCCAACCGCACCTAGTGCAATTCCACCGCTCCGAGGACTCGGCTCACCTCATCTCGCTCCCTACCAAATTTGACCACTTCAAGTCGTTTCATATGTACGACATCGTCGTCAAGAATAGATCCTTCTTTGAAGTTCGTGATCCTAATGCATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

128

Amino Acids

14.92

Weight (kDa)

9.2

Isoelectric Point (pI)

41.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 385
AasI GACNNNNNNGTC 1 cut(s) 338
AccBSI CCGCTC 1 cut(s) 261
AciI CCGC 4 cut(s) 86, 108, 239, 259
AclWI GGATC 2 cut(s) 345, 365
AcsI RAATTY 1 cut(s) 299
AcyI GRCGYC 1 cut(s) 33
AdeI CACNNNGTG 1 cut(s) 247
AfaI GTAC 2 cut(s) 100, 329
AfiI CCNNNNNNNGG 3 cut(s) 12, 95, 265
AgsI TTSAA 2 cut(s) 313, 362
AluBI AGCT 1 cut(s) 119
AluI AGCT 1 cut(s) 119
Alw21I GWGCWC 1 cut(s) 121
AlwI GGATC 2 cut(s) 345, 365
Ama87I CYCGRG 2 cut(s) 60, 179
AoxI GGCC 1 cut(s) 218
ApeKI GCWGC 1 cut(s) 184
ApoI RAATTY 1 cut(s) 299
ArsI GACNNNNNNTTYG 2 cut(s) 18, 50
AspS9I GGNCC 2 cut(s) 165, 219
AsuC2I CCSGG 2 cut(s) 96, 114
AsuHPI GGTGA 1 cut(s) 269
AvaI CYCGRG 2 cut(s) 60, 179
AvaII GGWCC 1 cut(s) 165
BanII GRGCYC 1 cut(s) 121
Bbv12I GWGCWC 1 cut(s) 121
BbvI GCAGC 1 cut(s) 196
BceAI ACGGC 1 cut(s) 46
BcnI CCSGG 2 cut(s) 96, 114
BfaI CTAG 1 cut(s) 245
BisI GCNGC 1 cut(s) 185
BlsI GCNGC 1 cut(s) 186
Bme1390I CCNGG 2 cut(s) 96, 114
Bme18I GGWCC 1 cut(s) 165
BmeT110I CYCGRG 2 cut(s) 60, 179
BmgT120I GGNCC 2 cut(s) 165, 219
BmrFI CCNGG 2 cut(s) 96, 114
BpuMI CCSGG 2 cut(s) 96, 114
BsaHI GRCGYC 1 cut(s) 33
BsaJI CCNNGG 1 cut(s) 264
BsaWI WCCGGW 1 cut(s) 162
Bsc4I CCNNNNNNNGG 3 cut(s) 12, 95, 265
Bse118I RCCGGY 1 cut(s) 216
Bse1I ACTGG 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 264
BseGI GGATG 1 cut(s) 159
BseLI CCNNNNNNNGG 3 cut(s) 12, 95, 265
BseNI ACTGG 1 cut(s) 48
BseXI GCAGC 1 cut(s) 196
Bsh1285I CGRYCG 1 cut(s) 108
BshFI GGCC 1 cut(s) 220
BsiEI CGRYCG 1 cut(s) 108
BsiHKAI GWGCWC 1 cut(s) 121
BsiHKCI CYCGRG 2 cut(s) 60, 179
BsiSI CCGG 5 cut(s) 6, 95, 114, 163, 217
BslI CCNNNNNNNGG 3 cut(s) 12, 95, 265
BsnI GGCC 1 cut(s) 220
BsoBI CYCGRG 2 cut(s) 60, 179
Bsp1286I GDGCHC 1 cut(s) 121
Bsp143I GATC 2 cut(s) 350, 370
BspACI CCGC 4 cut(s) 86, 108, 239, 259
BspANI GGCC 1 cut(s) 220
BspPI GGATC 2 cut(s) 345, 365
BsrBI CCGCTC 1 cut(s) 261
BsrFI RCCGGY 1 cut(s) 216
BsrI ACTGG 1 cut(s) 48
BssAI RCCGGY 1 cut(s) 216
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 2 cut(s) 350, 370
BssNI GRCGYC 1 cut(s) 33
BstACI GRCGYC 1 cut(s) 33
BstAPI GCANNNNNTGC 1 cut(s) 247
BstF5I GGATG 1 cut(s) 159
BstKTI GATC 2 cut(s) 353, 373
BstMBI GATC 2 cut(s) 350, 370
BstMCI CGRYCG 1 cut(s) 108
BstMWI GCNNNNNNNGC 3 cut(s) 116, 210, 247
BstSCI CCNGG 2 cut(s) 94, 112
BstV1I GCAGC 1 cut(s) 196
BstX2I RGATCY 1 cut(s) 350
BstYI RGATCY 1 cut(s) 350
BsuRI GGCC 1 cut(s) 220
BtsCI GGATG 1 cut(s) 159
BtsIMutI CAGTG 1 cut(s) 192
Cfr10I RCCGGY 1 cut(s) 216
Cfr13I GGNCC 2 cut(s) 165, 219
CseI GACGC 1 cut(s) 22
Csp6I GTAC 2 cut(s) 99, 328
CviJI RGCY 5 cut(s) 119, 149, 204, 220, 275
CviKI_1 RGCY 5 cut(s) 119, 149, 204, 220, 275
CviQI GTAC 2 cut(s) 99, 328
DpnI GATC 2 cut(s) 352, 372
DpnII GATC 2 cut(s) 350, 370
DraIII CACNNNGTG 1 cut(s) 247
DrdI GACNNNNNNGTC 1 cut(s) 338
DseDI GACNNNNNNGTC 1 cut(s) 338
Ecl136II GAGCTC 1 cut(s) 119
Eco24I GRGCYC 1 cut(s) 121
Eco47I GGWCC 1 cut(s) 165
Eco53kI GAGCTC 1 cut(s) 119
Eco88I CYCGRG 2 cut(s) 60, 179
EcoICRI GAGCTC 1 cut(s) 119
EcoT22I ATGCAT 1 cut(s) 382
EcoT38I GRGCYC 1 cut(s) 121
FaiI YATR 5 cut(s) 139, 171, 324, 326, 385
FauNDI CATATG 1 cut(s) 324
Fnu4HI GCNGC 1 cut(s) 185
FokI GGATG 1 cut(s) 146
FriOI GRGCYC 1 cut(s) 121
Fsp4HI GCNGC 1 cut(s) 185
FspBI CTAG 1 cut(s) 245
GluI GCNGC 1 cut(s) 185
HaeIII GGCC 1 cut(s) 220
HapII CCGG 5 cut(s) 6, 95, 114, 163, 217
HgaI GACGC 1 cut(s) 22
Hin1I GRCGYC 1 cut(s) 33
HinfI GANTC 4 cut(s) 65, 189, 208, 269
HpaII CCGG 5 cut(s) 6, 95, 114, 163, 217
HphI GGTGA 1 cut(s) 269
Hpy188I TCNGA 1 cut(s) 265
Hpy188III TCNNGA 2 cut(s) 343, 368
Hpy99I CGWCG 1 cut(s) 341
HpyAV CCTTC 3 cut(s) 79, 152, 364
HpyCH4V TGCA 2 cut(s) 250, 380
HpyF10VI GCNNNNNNNGC 3 cut(s) 116, 210, 247
Hsp92I GRCGYC 1 cut(s) 33
Kzo9I GATC 2 cut(s) 350, 370
LmnI GCTCC 3 cut(s) 116, 266, 294
LpnPI CCDG 8 cut(s) 19, 29, 108, 127, 159, 176, 190, 230
Lsp1109I GCAGC 1 cut(s) 196
MaeI CTAG 1 cut(s) 245
MaeIII GTNAC 2 cut(s) 34, 46
MalI GATC 2 cut(s) 352, 372
MbiI CCGCTC 1 cut(s) 261
MboI GATC 2 cut(s) 350, 370
MflI RGATCY 1 cut(s) 350
MhlI GDGCHC 1 cut(s) 121
MluCI AATT 2 cut(s) 251, 299
MlyI GAGTC 3 cut(s) 183, 202, 263
MnlI CCTC 2 cut(s) 259, 290
Mph1103I ATGCAT 1 cut(s) 382
MspI CCGG 5 cut(s) 6, 95, 114, 163, 217
MspR9I CCNGG 2 cut(s) 96, 114
MwoI GCNNNNNNNGC 3 cut(s) 116, 210, 247
NciI CCSGG 2 cut(s) 96, 114
NdeI CATATG 1 cut(s) 324
NdeII GATC 2 cut(s) 350, 370
NmeAIII GCCGAG 2 cut(s) 180, 251
NmuCI GTSAC 2 cut(s) 34, 46
NsiI ATGCAT 1 cut(s) 382
PaeR7I CTCGAG 1 cut(s) 179
PcsI WCGNNNNNNNCGW 1 cut(s) 336
PfeI GAWTC 1 cut(s) 65
PflFI GACNNNGTC 1 cut(s) 335
PkrI GCNGC 1 cut(s) 186
PleI GAGTC 3 cut(s) 183, 202, 263
PpsI GAGTC 3 cut(s) 183, 202, 263
PsiI TTATAA 1 cut(s) 385
Psp124BI GAGCTC 1 cut(s) 121
PspPI GGNCC 2 cut(s) 165, 219
PspXI VCTCGAGB 1 cut(s) 179
PsuI RGATCY 1 cut(s) 350
PsyI GACNNNGTC 1 cut(s) 335
RsaI GTAC 2 cut(s) 100, 329
RsaNI GTAC 2 cut(s) 99, 328
SacI GAGCTC 1 cut(s) 121
SatI GCNGC 1 cut(s) 185
Sau3AI GATC 2 cut(s) 350, 370
Sau96I GGNCC 2 cut(s) 165, 219
SchI GAGTC 3 cut(s) 183, 202, 263
ScrFI CCNGG 2 cut(s) 96, 114
SduI GDGCHC 1 cut(s) 121
SetI ASST 4 cut(s) 121, 144, 246, 282
Sfr274I CTCGAG 1 cut(s) 179
SinI GGWCC 1 cut(s) 165
SlaI CTCGAG 1 cut(s) 179
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
Sse9I AATT 2 cut(s) 251, 299
SsiI CCGC 4 cut(s) 86, 108, 239, 259
SspMI CTAG 1 cut(s) 245
SstI GAGCTC 1 cut(s) 121
StyD4I CCNGG 2 cut(s) 94, 112
TaqI TCGA 5 cut(s) 21, 40, 72, 121, 180
TasI AATT 2 cut(s) 251, 299
TfiI GAWTC 1 cut(s) 65
TscAI CASTG 1 cut(s) 199
TseFI GTSAC 2 cut(s) 34, 46
TseI GCWGC 1 cut(s) 184
Tsp45I GTSAC 2 cut(s) 34, 46
TspDTI ATGAA 1 cut(s) 311
TspRI CASTG 1 cut(s) 199
Tth111I GACNNNGTC 1 cut(s) 335
VpaK11BI GGWCC 1 cut(s) 165
XapI RAATTY 1 cut(s) 299
XhoI CTCGAG 1 cut(s) 179
XspI CTAG 1 cut(s) 245
Zsp2I ATGCAT 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.