Rh2CG532000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000325
Physical Location & Seq
Forward (+)
70764856 .. 70765444
589 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG532000.1

Sequence Viewer

Length: 279 bp
ATGGATGTCACAAGTGCCATGAGCTTATTACCTGGAGCATCAAAACTTTCACAGAAGCTTCTCAGTGGTGATAGTTTAGGCATGAATTTTCAAGCTAACAAGCCTCAACTAATGCCTTTTGCACAGCAAGTTCATTTTCCCCAGCAAAATCTGGGAGTGTACAATACTATAAGCAATTATCAGCAATTGCTCCAGAGACAATCCAAAGTAGCAGCAAGCATGGATAATGGCCATTTGGTCGAGACTGGGGAGAGGTTGCAATTTCACAAGCAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.23

Weight (kDa)

9.22

Isoelectric Point (pI)

47.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 229
AcsI RAATTY 1 cut(s) 85
AfaI GTAC 1 cut(s) 161
AgsI TTSAA 1 cut(s) 92
AjnI CCWGG 1 cut(s) 31
AluBI AGCT 3 cut(s) 24, 58, 95
AluI AGCT 3 cut(s) 24, 58, 95
Alw26I GTCTC 2 cut(s) 190, 236
AoxI GGCC 1 cut(s) 229
ApeKI GCWGC 1 cut(s) 212
ApoI RAATTY 1 cut(s) 85
AsuHPI GGTGA 1 cut(s) 80
BalI TGGCCA 1 cut(s) 231
BbvI GCAGC 1 cut(s) 224
BciT130I CCWGG 1 cut(s) 33
BcoDI GTCTC 2 cut(s) 190, 236
BisI GCNGC 1 cut(s) 213
BlsI GCNGC 1 cut(s) 214
Bme1390I CCNGG 1 cut(s) 33
BmrFI CCNGG 1 cut(s) 33
BmrI ACTGGG 1 cut(s) 255
BmsI GCATC 1 cut(s) 47
BmuI ACTGGG 1 cut(s) 255
BpmI CTGGAG 2 cut(s) 54, 176
Bse1I ACTGG 1 cut(s) 250
BseBI CCWGG 1 cut(s) 33
BseGI GGATG 1 cut(s) 10
BseMII CTCAG 1 cut(s) 76
BseNI ACTGG 1 cut(s) 250
BseXI GCAGC 1 cut(s) 224
BseYI CCCAGC 1 cut(s) 141
BshFI GGCC 1 cut(s) 231
BsmAI GTCTC 2 cut(s) 190, 236
BsnI GGCC 1 cut(s) 231
Bsp1407I TGTACA 1 cut(s) 159
BspANI GGCC 1 cut(s) 231
BspCNI CTCAG 1 cut(s) 75
BsrGI TGTACA 1 cut(s) 159
BsrI ACTGG 1 cut(s) 250
Bst2UI CCWGG 1 cut(s) 33
BstAUI TGTACA 1 cut(s) 159
BstC8I GCNNGC 1 cut(s) 217
BstDEI CTNAG 1 cut(s) 62
BstF5I GGATG 1 cut(s) 10
BstMAI GTCTC 2 cut(s) 190, 236
BstNI CCWGG 1 cut(s) 33
BstSCI CCNGG 1 cut(s) 31
BstV1I GCAGC 1 cut(s) 224
BsuRI GGCC 1 cut(s) 231
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 70
Cac8I GCNNGC 1 cut(s) 217
Csp6I GTAC 1 cut(s) 160
CviAII CATG 3 cut(s) 19, 82, 220
CviJI RGCY 5 cut(s) 24, 58, 95, 103, 231
CviKI_1 RGCY 5 cut(s) 24, 58, 95, 103, 231
CviQI GTAC 1 cut(s) 160
DdeI CTNAG 1 cut(s) 62
EaeI YGGCCR 1 cut(s) 229
EcoRII CCWGG 1 cut(s) 31
FaeI CATG 3 cut(s) 22, 85, 223
FaiI YATR 4 cut(s) 20, 83, 170, 221
FatI CATG 3 cut(s) 18, 81, 219
Fnu4HI GCNGC 1 cut(s) 213
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 213
GluI GCNGC 1 cut(s) 213
GsaI CCCAGC 1 cut(s) 145
GsuI CTGGAG 2 cut(s) 54, 176
HaeIII GGCC 1 cut(s) 231
Hin1II CATG 3 cut(s) 22, 85, 223
HindIII AAGCTT 1 cut(s) 56
HphI GGTGA 1 cut(s) 80
Hpy166II GTNNAC 1 cut(s) 160
Hpy188III TCNNGA 2 cut(s) 193, 241
Hpy8I GTNNAC 1 cut(s) 160
HpyCH4V TGCA 2 cut(s) 122, 259
HpyF3I CTNAG 1 cut(s) 62
Hsp92II CATG 3 cut(s) 22, 85, 223
LmnI GCTCC 2 cut(s) 35, 195
LpnPI CCDG 6 cut(s) 18, 45, 137, 155, 206, 231
Lsp1109I GCAGC 1 cut(s) 224
LweI GCATC 1 cut(s) 47
MaeIII GTNAC 1 cut(s) 7
MfeI CAATTG 1 cut(s) 185
MlsI TGGCCA 1 cut(s) 231
MluCI AATT 5 cut(s) 85, 175, 185, 260, 274
MluNI TGGCCA 1 cut(s) 231
MnlI CCTC 2 cut(s) 114, 246
Mox20I TGGCCA 1 cut(s) 231
MscI TGGCCA 1 cut(s) 231
Msp20I TGGCCA 1 cut(s) 231
MspR9I CCNGG 1 cut(s) 33
MunI CAATTG 1 cut(s) 185
MvaI CCWGG 1 cut(s) 33
NlaIII CATG 3 cut(s) 22, 85, 223
NmuCI GTSAC 1 cut(s) 7
PkrI GCNGC 1 cut(s) 214
Psp6I CCWGG 1 cut(s) 31
PspFI CCCAGC 1 cut(s) 141
PspGI CCWGG 1 cut(s) 31
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
SatI GCNGC 1 cut(s) 213
ScrFI CCNGG 1 cut(s) 33
SetI ASST 5 cut(s) 26, 34, 60, 97, 257
SfaNI GCATC 1 cut(s) 47
Sse9I AATT 5 cut(s) 85, 175, 185, 260, 274
StyD4I CCNGG 1 cut(s) 31
TaqI TCGA 1 cut(s) 240
TasI AATT 5 cut(s) 85, 175, 185, 260, 274
TatI WGTACW 1 cut(s) 159
TscAI CASTG 1 cut(s) 70
TseFI GTSAC 1 cut(s) 7
TseI GCWGC 1 cut(s) 212
Tsp45I GTSAC 1 cut(s) 7
TspDTI ATGAA 2 cut(s) 98, 122
TspRI CASTG 1 cut(s) 70
XapI RAATTY 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.