Rh3CG289400

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000325
Physical Location & Seq
Forward (+)
29347040 .. 29349601
2562 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG289400.1

Sequence Viewer

Length: 660 bp
ATGGATACCATCTCTGACAAGAATGAAGAACTGATTGCGCTTGGACAGGAGGTTACAAAGAATATAGTATGTATAAATAATGAGCTGTTAAGTGGTAGAGAAGTTGCTTTTCCAGATGAGGATGAATTCGGTTTGCAAGGTTATGACGAGTTCAGTTTGCTGGGTGAGAATGGAATTGATTTGCAAGGTGAGGAACAAGATGATTTAGTAAGTGAGGAAGAAGATGATTTAGTAAGTGAGGATGAAGTTGATGTGCAAACTGAGGAGACTTTTCAATGTAATGATTCTTCTTTAAGTTCAAATGAAGACAAAGAGAAGAAAGAAGAACTATATATCGGAATGGAGTTTAGTTCTGATGAGAGCGCGTATAAAGCTTATGCTAAATATGGAGGAAAATCTGGTTTCAATGTGAGAAAACAACGAAAGAAGAGAAACAACAAGGGTTTGGTTGTAAGGTTGCTTTATTGTTGCTCAAAAGAAGGTTACCGAAAGACCAGAACAAAGAGGGAAACATCTTATTCATTACCAGTTACAAGAGTCGGTTGTAAAGCCCATATGAGTTGCTATCGTCAAAGCAACGGAAAATTCAAGATTGTGTCGTTTGAGACAAATCACAATCATGAGTTGATTAAAACACCTATGAAGCATATGTATTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

219

Amino Acids

25.17

Weight (kDa)

4.9

Isoelectric Point (pI)

42.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 126 - 210 6.2e-19 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 365
AcsI RAATTY 2 cut(s) 125, 584
AgsI TTSAA 4 cut(s) 275, 300, 406, 589
AluBI AGCT 2 cut(s) 85, 374
AluI AGCT 2 cut(s) 85, 374
Alw26I GTCTC 2 cut(s) 260, 599
ApoI RAATTY 2 cut(s) 125, 584
AspLEI GCGC 2 cut(s) 40, 365
AsuHPI GGTGA 2 cut(s) 176, 200
BarI GAAGNNNNNNTAC 2 cut(s) 271, 303
BbsI GAAGAC 1 cut(s) 312
BccI CCATC 1 cut(s) 17
BcoDI GTCTC 2 cut(s) 260, 599
BpiI GAAGAC 1 cut(s) 312
Bse1I ACTGG 1 cut(s) 527
BseGI GGATG 2 cut(s) 127, 247
BseMII CTCAG 1 cut(s) 252
BseNI ACTGG 1 cut(s) 527
BseRI GAGGAG 1 cut(s) 278
BseYI CCCAGC 1 cut(s) 160
Bsh1236I CGCG 1 cut(s) 365
BsmAI GTCTC 2 cut(s) 260, 599
BspCNI CTCAG 1 cut(s) 253
BspFNI CGCG 1 cut(s) 365
BspHI TCATGA 1 cut(s) 619
BsrI ACTGG 1 cut(s) 527
Bst6I CTCTTC 1 cut(s) 422
BstDEI CTNAG 1 cut(s) 261
BstEII GGTNACC 1 cut(s) 482
BstF5I GGATG 2 cut(s) 127, 247
BstFNI CGCG 1 cut(s) 365
BstHHI GCGC 2 cut(s) 40, 365
BstMAI GTCTC 2 cut(s) 260, 599
BstMWI GCNNNNNNNGC 1 cut(s) 371
BstPI GGTNACC 1 cut(s) 482
BstUI CGCG 1 cut(s) 365
BstV2I GAAGAC 1 cut(s) 312
BtsCI GGATG 2 cut(s) 127, 247
CciI TCATGA 1 cut(s) 619
CfoI GCGC 2 cut(s) 40, 365
CviAII CATG 1 cut(s) 620
CviJI RGCY 3 cut(s) 85, 374, 551
CviKI_1 RGCY 3 cut(s) 85, 374, 551
DdeI CTNAG 1 cut(s) 261
Eam1104I CTCTTC 1 cut(s) 422
EarI CTCTTC 1 cut(s) 422
Eco91I GGTNACC 1 cut(s) 482
EcoO65I GGTNACC 1 cut(s) 482
EcoRI GAATTC 1 cut(s) 125
FaeI CATG 1 cut(s) 623
FatI CATG 1 cut(s) 619
FauNDI CATATG 2 cut(s) 555, 648
FokI GGATG 2 cut(s) 134, 254
GlaI GCGC 2 cut(s) 39, 364
GsaI CCCAGC 1 cut(s) 164
HhaI GCGC 2 cut(s) 40, 365
Hin1II CATG 1 cut(s) 623
Hin6I GCGC 2 cut(s) 38, 363
HinP1I GCGC 2 cut(s) 38, 363
HindIII AAGCTT 1 cut(s) 372
HinfI GANTC 2 cut(s) 284, 537
HphI GGTGA 2 cut(s) 176, 200
Hpy188I TCNGA 3 cut(s) 16, 338, 355
Hpy188III TCNNGA 3 cut(s) 113, 589, 620
HpyAV CCTTC 1 cut(s) 473
HpyCH4V TGCA 3 cut(s) 136, 184, 256
HpyF10VI GCNNNNNNNGC 1 cut(s) 371
HpyF3I CTNAG 1 cut(s) 261
Hsp92II CATG 1 cut(s) 623
HspAI GCGC 2 cut(s) 38, 363
LpnPI CCDG 6 cut(s) 32, 126, 146, 384, 508, 540
MaeIII GTNAC 3 cut(s) 52, 482, 529
MboII GAAGA 8 cut(s) 38, 230, 233, 279, 317, 328, 335, 439
MluCI AATT 3 cut(s) 125, 174, 584
MlyI GAGTC 1 cut(s) 546
MnlI CCTC 8 cut(s) 43, 112, 184, 208, 232, 256, 383, 498
MseI TTAA 3 cut(s) 89, 293, 630
MslI CAYNNNNRTG 1 cut(s) 618
MvnI CGCG 1 cut(s) 365
MwoI GCNNNNNNNGC 1 cut(s) 371
NdeI CATATG 2 cut(s) 555, 648
NlaIII CATG 1 cut(s) 623
PagI TCATGA 1 cut(s) 619
PfeI GAWTC 1 cut(s) 284
PleI GAGTC 1 cut(s) 545
PpsI GAGTC 1 cut(s) 545
PspEI GGTNACC 1 cut(s) 482
PspFI CCCAGC 1 cut(s) 160
RseI CAYNNNNRTG 1 cut(s) 618
SaqAI TTAA 3 cut(s) 89, 293, 630
SchI GAGTC 1 cut(s) 546
SetI ASST 8 cut(s) 54, 87, 142, 190, 376, 458, 484, 640
SmiMI CAYNNNNRTG 1 cut(s) 618
Sse9I AATT 3 cut(s) 125, 174, 584
TasI AATT 3 cut(s) 125, 174, 584
TfiI GAWTC 1 cut(s) 284
Tru1I TTAA 3 cut(s) 89, 293, 630
Tru9I TTAA 3 cut(s) 89, 293, 630
TspDTI ATGAA 6 cut(s) 39, 138, 258, 318, 510, 656
TspGWI ACGGA 1 cut(s) 594
XapI RAATTY 2 cut(s) 125, 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.