Rorug05G0386500

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000325
Physical Location & Seq
Reverse (-)
52557389 .. 52557861
473 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0386500.1

Sequence Viewer

Length: 303 bp
ATGTATGCAAAGTGTGGGAATGTTGATCTGGCCAAGCACTCAGGTCTAGTAGATGAAGGGAGAAAGCATTTTGAGAGCATGATTAAAGACTACTCCCTTGTCCCTGGTGTAGAGAACTATGCTTGTATGGTTGATCATCTTGATCGAGCGGGTTGTTTGTTAGAAGCTTATAAGTTTATTGAGAGGATGCCGGTTGAGCCGGACGTTGGTGTTTGGGGAGCTTTACTTAGTGCTTGCAGGATATATGGCAATGTTGAGCTAGCTGAACTTGTGGCAGCCCGTTTGTCCCTGTTCTTATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

100

Amino Acids

11.1

Weight (kDa)

5.25

Isoelectric Point (pI)

34.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 171
AccBSI CCGCTC 1 cut(s) 149
AciI CCGC 1 cut(s) 149
AcoI YGGCCR 1 cut(s) 30
AfiI CCNNNNNNNGG 1 cut(s) 206
AjnI CCWGG 1 cut(s) 103
AluBI AGCT 4 cut(s) 167, 221, 259, 263
AluI AGCT 4 cut(s) 167, 221, 259, 263
AoxI GGCC 1 cut(s) 30
ApeKI GCWGC 1 cut(s) 275
AsuNHI GCTAGC 1 cut(s) 259
BalI TGGCCA 1 cut(s) 32
BbvI GCAGC 1 cut(s) 287
BciT130I CCWGG 1 cut(s) 105
BclI TGATCA 1 cut(s) 133
BfaI CTAG 2 cut(s) 47, 260
BisI GCNGC 1 cut(s) 276
BlsI GCNGC 1 cut(s) 277
Bme1390I CCNGG 1 cut(s) 105
BmrFI CCNGG 1 cut(s) 105
BmsI GCATC 1 cut(s) 177
BmtI GCTAGC 1 cut(s) 263
BsaJI CCNNGG 1 cut(s) 103
Bsc4I CCNNNNNNNGG 1 cut(s) 206
Bse118I RCCGGY 1 cut(s) 190
Bse3DI GCAATG 1 cut(s) 256
BseBI CCWGG 1 cut(s) 105
BseDI CCNNGG 1 cut(s) 103
BseGI GGATG 1 cut(s) 192
BseLI CCNNNNNNNGG 1 cut(s) 206
BseMI GCAATG 1 cut(s) 256
BseMII CTCAG 1 cut(s) 54
BseXI GCAGC 1 cut(s) 287
BshFI GGCC 1 cut(s) 32
BsiSI CCGG 2 cut(s) 191, 200
BslFI GGGAC 2 cut(s) 86, 271
BslI CCNNNNNNNGG 1 cut(s) 206
BsmFI GGGAC 2 cut(s) 86, 271
BsnI GGCC 1 cut(s) 32
Bsp143I GATC 3 cut(s) 25, 133, 142
BspACI CCGC 1 cut(s) 149
BspANI GGCC 1 cut(s) 32
BspCNI CTCAG 1 cut(s) 53
BspOI GCTAGC 1 cut(s) 263
BsrBI CCGCTC 1 cut(s) 149
BsrDI GCAATG 1 cut(s) 256
BsrFI RCCGGY 1 cut(s) 190
BssAI RCCGGY 1 cut(s) 190
BssECI CCNNGG 1 cut(s) 103
BssMI GATC 3 cut(s) 25, 133, 142
Bst2UI CCWGG 1 cut(s) 105
BstC8I GCNNGC 2 cut(s) 235, 261
BstDEI CTNAG 2 cut(s) 40, 227
BstF5I GGATG 1 cut(s) 192
BstKTI GATC 3 cut(s) 28, 136, 145
BstMBI GATC 3 cut(s) 25, 133, 142
BstMWI GCNNNNNNNGC 1 cut(s) 196
BstNI CCWGG 1 cut(s) 105
BstSCI CCNGG 1 cut(s) 103
BstV1I GCAGC 1 cut(s) 287
BsuRI GGCC 1 cut(s) 32
BtsCI GGATG 1 cut(s) 192
Cac8I GCNNGC 2 cut(s) 235, 261
Cfr10I RCCGGY 1 cut(s) 190
CviAII CATG 1 cut(s) 79
CviJI RGCY 7 cut(s) 32, 167, 199, 221, 259, 263, 278
CviKI_1 RGCY 7 cut(s) 32, 167, 199, 221, 259, 263, 278
DdeI CTNAG 2 cut(s) 40, 227
DpnI GATC 3 cut(s) 27, 135, 144
DpnII GATC 3 cut(s) 25, 133, 142
EaeI YGGCCR 1 cut(s) 30
EcoRII CCWGG 1 cut(s) 103
FaeI CATG 1 cut(s) 82
FaiI YATR 8 cut(s) 6, 80, 120, 128, 171, 244, 246, 298
FaqI GGGAC 2 cut(s) 86, 271
FatI CATG 1 cut(s) 78
FauI CCCGC 1 cut(s) 142
FbaI TGATCA 1 cut(s) 133
Fnu4HI GCNGC 1 cut(s) 276
FokI GGATG 1 cut(s) 199
Fsp4HI GCNGC 1 cut(s) 276
FspBI CTAG 2 cut(s) 47, 260
GluI GCNGC 1 cut(s) 276
HaeIII GGCC 1 cut(s) 32
HapII CCGG 2 cut(s) 191, 200
Hin1II CATG 1 cut(s) 82
HindIII AAGCTT 1 cut(s) 165
HpaII CCGG 2 cut(s) 191, 200
Hpy188III TCNNGA 1 cut(s) 140
HpyAV CCTTC 1 cut(s) 50
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 2 cut(s) 8, 237
HpyF10VI GCNNNNNNNGC 1 cut(s) 196
HpyF3I CTNAG 2 cut(s) 40, 227
HpySE526I ACGT 1 cut(s) 204
Hsp92II CATG 1 cut(s) 82
Ksp22I TGATCA 1 cut(s) 133
Kzo9I GATC 3 cut(s) 25, 133, 142
LmnI GCTCC 1 cut(s) 218
LpnPI CCDG 7 cut(s) 14, 27, 90, 117, 204, 213, 223
Lsp1109I GCAGC 1 cut(s) 287
LweI GCATC 1 cut(s) 177
MaeI CTAG 2 cut(s) 47, 260
MaeII ACGT 1 cut(s) 204
MalI GATC 3 cut(s) 27, 135, 144
MbiI CCGCTC 1 cut(s) 149
MboI GATC 3 cut(s) 25, 133, 142
MlsI TGGCCA 1 cut(s) 32
MluNI TGGCCA 1 cut(s) 32
MnlI CCTC 1 cut(s) 177
Mox20I TGGCCA 1 cut(s) 32
MscI TGGCCA 1 cut(s) 32
MseI TTAA 2 cut(s) 84, 301
Msp20I TGGCCA 1 cut(s) 32
MspI CCGG 2 cut(s) 191, 200
MspR9I CCNGG 1 cut(s) 105
MvaI CCWGG 1 cut(s) 105
MwoI GCNNNNNNNGC 1 cut(s) 196
NdeII GATC 3 cut(s) 25, 133, 142
NheI GCTAGC 1 cut(s) 259
NlaIII CATG 1 cut(s) 82
PkrI GCNGC 1 cut(s) 277
PsiI TTATAA 1 cut(s) 171
Psp6I CCWGG 1 cut(s) 103
PspGI CCWGG 1 cut(s) 103
SaqAI TTAA 2 cut(s) 84, 301
SatI GCNGC 1 cut(s) 276
Sau3AI GATC 3 cut(s) 25, 133, 142
ScrFI CCNGG 1 cut(s) 105
SetI ASST 6 cut(s) 46, 169, 207, 223, 261, 265
SfaNI GCATC 1 cut(s) 177
SsiI CCGC 1 cut(s) 149
SspMI CTAG 2 cut(s) 47, 260
StyD4I CCNGG 1 cut(s) 103
TaiI ACGT 1 cut(s) 207
TaqI TCGA 1 cut(s) 145
Tru1I TTAA 2 cut(s) 84, 301
Tru9I TTAA 2 cut(s) 84, 301
TseI GCWGC 1 cut(s) 275
TspDTI ATGAA 1 cut(s) 69
XspI CTAG 2 cut(s) 47, 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.