Rmu_sc0002572.1_g000008

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002572.1
OG0000325
Physical Location & Seq
Reverse (-)
39506 .. 40519
1014 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002572.1_g000008.1.cds

Sequence Viewer

Length: 1014 bp
atggattctcgcccgagaaagaaagcaagtttggcacagaaagatccattaatcatcgacataaataacccgtctcatgaagatattccggattacggttatgtccaagagacatcattgggggattatcttttgcggtttttcgaacattatgaaagagttttggctgatcgaagatatcaagagttgattgctgaatataagatgatacaaacaactcctgtcttggcagtaagtgcacatatgctgcaacatggagcagaggtgtatactccagaggttttcttgctgtttcagaaagaatttgtgagaattcataattatagtacttacaaggttggtaagtctgggatgacatcagagtatatagtatcatatagttctgaacataatgagcacttggtcaaatatgaagcttcaacacaaaatgttaattgtagttgtaaaaagttcacgtttgttgggattttgtgtgctcatgcactaaaagtgcttgacaagaagaatgtgaagaagattccaccgcaatacattttaaagcgatggacaagagaagcaaaaattatgagtattactagttatcatcctactgagattcatggtaatcctaaggagtcgattggcagacggtatggctacttgtgccgcacttctcgtgatattttaactgttgcagcagatgatgaagagttaacgagatatgcacatgaatgtttggttgagatgctcaaaggcttagagttaataaagaaaaatcgcactgagaaagaggggagaagttctagtgatagcagcgaagtgaatgctacttttggtcaaagtgaagaggttgagggaatagttcaatctaatgcttgtgaaacaacaattatccgtggagttaaaagaaaagctacaattggccgtccacgtaccagattcaaagacccggctgaaaaaaaaaagagtaaagtaccaaagaaaagcacaaaagctcccacaagaaggaaaatacccatgcaggtacaattctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

337

Amino Acids

38.77

Weight (kDa)

9.33

Isoelectric Point (pI)

41.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 991
AccI GTMKAC 1 cut(s) 269
AccIII TCCGGA 1 cut(s) 88
AciI CCGC 3 cut(s) 136, 524, 646
AclWI GGATC 1 cut(s) 38
AcoI YGGCCR 1 cut(s) 901
AcsI RAATTY 2 cut(s) 302, 312
AfaI GTAC 4 cut(s) 328, 913, 954, 1005
AfiI CCNNNNNNNGG 2 cut(s) 95, 984
AgsI TTSAA 3 cut(s) 420, 845, 922
AhlI ACTAGT 1 cut(s) 575
AjuI GAANNNNNNNTTGG 2 cut(s) 14, 46
AluBI AGCT 3 cut(s) 416, 893, 974
AluI AGCT 3 cut(s) 416, 893, 974
Alw21I GWGCWC 3 cut(s) 241, 399, 478
Alw26I GTCTC 2 cut(s) 78, 104
Alw44I GTGCAC 1 cut(s) 237
AlwI GGATC 1 cut(s) 38
Ama87I CYCGRG 1 cut(s) 13
Aor13HI TCCGGA 1 cut(s) 88
AoxI GGCC 1 cut(s) 901
ApaLI GTGCAC 1 cut(s) 237
ApeKI GCWGC 3 cut(s) 247, 674, 792
ApoI RAATTY 2 cut(s) 302, 312
AseI ATTAAT 1 cut(s) 50
Asp700I GAANNNNTTC 1 cut(s) 84
AsuC2I CCSGG 1 cut(s) 929
AsuII TTCGAA 1 cut(s) 144
AvaI CYCGRG 1 cut(s) 13
AxyI CCTNAGG 1 cut(s) 609
BaeGI GKGCMC 1 cut(s) 241
BauI CACGAG 1 cut(s) 654
Bbv12I GWGCWC 3 cut(s) 241, 399, 478
BbvI GCAGC 3 cut(s) 234, 686, 804
BccI CCATC 1 cut(s) 537
BceAI ACGGC 1 cut(s) 888
BcgI CGANNNNNNTGC 2 cut(s) 785, 819
BcnI CCSGG 1 cut(s) 929
BcoDI GTCTC 2 cut(s) 78, 104
BcuI ACTAGT 1 cut(s) 575
BfaI CTAG 2 cut(s) 576, 783
BfuAI ACCTGC 1 cut(s) 991
BisI GCNGC 4 cut(s) 248, 646, 675, 793
BlsI GCNGC 4 cut(s) 249, 647, 676, 794
BmcAI AGTACT 1 cut(s) 328
Bme1390I CCNGG 1 cut(s) 929
BmeT110I CYCGRG 1 cut(s) 13
BmrFI CCNGG 1 cut(s) 929
BmsI GCATC 1 cut(s) 714
BpmI CTGGAG 1 cut(s) 258
Bpu14I TTCGAA 1 cut(s) 144
BpuMI CCSGG 1 cut(s) 929
BsaAI YACGTR 1 cut(s) 911
BsaJI CCNNGG 1 cut(s) 874
BsaWI WCCGGW 1 cut(s) 88
BsaXI ACNNNNNCTCC 4 cut(s) 249, 279, 958, 988
Bsc4I CCNNNNNNNGG 2 cut(s) 95, 984
Bse21I CCTNAGG 1 cut(s) 609
BseAI TCCGGA 1 cut(s) 88
BseDI CCNNGG 1 cut(s) 874
BseGI GGATG 2 cut(s) 357, 583
BseLI CCNNNNNNNGG 2 cut(s) 95, 984
BseMII CTCAG 2 cut(s) 582, 753
BseSI GKGCMC 1 cut(s) 241
BseXI GCAGC 3 cut(s) 234, 686, 804
BshFI GGCC 1 cut(s) 903
BsiHKAI GWGCWC 3 cut(s) 241, 399, 478
BsiHKCI CYCGRG 1 cut(s) 13
BsiSI CCGG 2 cut(s) 89, 929
BslI CCNNNNNNNGG 2 cut(s) 95, 984
BsmAI GTCTC 2 cut(s) 78, 104
BsmBI CGTCTC 1 cut(s) 78
BsmI GAATGC 1 cut(s) 808
BsnI GGCC 1 cut(s) 903
BsoBI CYCGRG 1 cut(s) 13
Bsp119I TTCGAA 1 cut(s) 144
Bsp1286I GDGCHC 3 cut(s) 241, 399, 478
Bsp13I TCCGGA 1 cut(s) 88
Bsp143I GATC 2 cut(s) 43, 169
BspACI CCGC 3 cut(s) 136, 524, 646
BspANI GGCC 1 cut(s) 903
BspCNI CTCAG 2 cut(s) 583, 754
BspEI TCCGGA 1 cut(s) 88
BspHI TCATGA 1 cut(s) 76
BspMI ACCTGC 1 cut(s) 991
BspPI GGATC 1 cut(s) 38
BspT104I TTCGAA 1 cut(s) 144
BssECI CCNNGG 1 cut(s) 874
BssMI GATC 2 cut(s) 43, 169
BssNAI GTATAC 1 cut(s) 270
BssSI CACGAG 1 cut(s) 654
Bst1107I GTATAC 1 cut(s) 270
Bst2BI CACGAG 1 cut(s) 654
Bst4CI ACNGT 3 cut(s) 98, 630, 670
Bst6I CTCTTC 2 cut(s) 681, 819
BstAPI GCANNNNNTGC 1 cut(s) 236
BstBAI YACGTR 1 cut(s) 911
BstBI TTCGAA 1 cut(s) 144
BstDEI CTNAG 4 cut(s) 591, 609, 736, 762
BstDSI CCRYGG 1 cut(s) 874
BstF5I GGATG 2 cut(s) 357, 583
BstKTI GATC 2 cut(s) 46, 172
BstMAI GTCTC 2 cut(s) 78, 104
BstMBI GATC 2 cut(s) 43, 169
BstMWI GCNNNNNNNGC 3 cut(s) 32, 236, 642
BstSCI CCNGG 1 cut(s) 927
BstSLI GKGCMC 1 cut(s) 241
BstV1I GCAGC 3 cut(s) 234, 686, 804
BstX2I RGATCY 1 cut(s) 43
BstYI RGATCY 1 cut(s) 43
BstZ17I GTATAC 1 cut(s) 270
Bsu36I CCTNAGG 1 cut(s) 609
BsuRI GGCC 1 cut(s) 903
BtgI CCRYGG 1 cut(s) 874
BtgZI GCGATG 1 cut(s) 556
BtsCI GGATG 2 cut(s) 357, 583
BtsIMutI CAGTG 1 cut(s) 759
BveI ACCTGC 1 cut(s) 991
CciI TCATGA 1 cut(s) 76
Csp6I GTAC 4 cut(s) 327, 912, 953, 1004
CviAII CATG 6 cut(s) 77, 254, 479, 599, 707, 997
CviJI RGCY 8 cut(s) 167, 416, 636, 735, 893, 903, 932, 974
CviKI_1 RGCY 8 cut(s) 167, 416, 636, 735, 893, 903, 932, 974
CviQI GTAC 4 cut(s) 327, 912, 953, 1004
DdeI CTNAG 4 cut(s) 591, 609, 736, 762
DpnI GATC 2 cut(s) 45, 171
DpnII GATC 2 cut(s) 43, 169
DraI TTTAAA 1 cut(s) 537
EaeI YGGCCR 1 cut(s) 901
Eam1104I CTCTTC 2 cut(s) 681, 819
EarI CTCTTC 2 cut(s) 681, 819
Eco32I GATATC 1 cut(s) 179
Eco81I CCTNAGG 1 cut(s) 609
Eco88I CYCGRG 1 cut(s) 13
EcoRI GAATTC 1 cut(s) 312
EcoRV GATATC 1 cut(s) 179
Esp3I CGTCTC 1 cut(s) 78
FaeI CATG 6 cut(s) 80, 257, 482, 602, 710, 1000
FatI CATG 6 cut(s) 76, 253, 478, 598, 706, 996
FauNDI CATATG 1 cut(s) 243
FblI GTMKAC 1 cut(s) 269
Fnu4HI GCNGC 4 cut(s) 248, 646, 675, 793
FokI GGATG 2 cut(s) 364, 570
Fsp4HI GCNGC 4 cut(s) 248, 646, 675, 793
FspBI CTAG 2 cut(s) 576, 783
GluI GCNGC 4 cut(s) 248, 646, 675, 793
GsuI CTGGAG 1 cut(s) 258
HaeIII GGCC 1 cut(s) 903
HapII CCGG 2 cut(s) 89, 929
Hin1II CATG 6 cut(s) 80, 257, 482, 602, 710, 1000
HincII GTYRAC 1 cut(s) 693
HindII GTYRAC 1 cut(s) 693
HindIII AAGCTT 1 cut(s) 414
HinfI GANTC 5 cut(s) 5, 517, 595, 614, 918
HpaI GTTAAC 1 cut(s) 693
HpaII CCGG 2 cut(s) 89, 929
Hpy166II GTNNAC 5 cut(s) 239, 270, 453, 693, 908
Hpy188I TCNGA 3 cut(s) 297, 361, 385
Hpy188III TCNNGA 5 cut(s) 77, 89, 182, 275, 656
Hpy8I GTNNAC 5 cut(s) 239, 270, 453, 693, 908
HpyAV CCTTC 1 cut(s) 978
HpyCH4III ACNGT 3 cut(s) 98, 630, 670
HpyCH4IV ACGT 2 cut(s) 455, 910
HpyCH4V TGCA 6 cut(s) 239, 250, 482, 674, 704, 1000
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 236, 642
HpyF3I CTNAG 4 cut(s) 591, 609, 736, 762
HpySE526I ACGT 2 cut(s) 455, 910
Hsp92II CATG 6 cut(s) 80, 257, 482, 602, 710, 1000
Kpn2I TCCGGA 1 cut(s) 88
KspAI GTTAAC 1 cut(s) 693
Kzo9I GATC 2 cut(s) 43, 169
LmnI GCTCC 2 cut(s) 257, 979
LpnPI CCDG 7 cut(s) 102, 234, 288, 333, 928, 942, 986
Lsp1109I GCAGC 3 cut(s) 234, 686, 804
LweI GCATC 1 cut(s) 714
MaeI CTAG 2 cut(s) 576, 783
MaeII ACGT 2 cut(s) 455, 910
MalI GATC 2 cut(s) 45, 171
MboI GATC 2 cut(s) 43, 169
MboII GAAGA 7 cut(s) 92, 186, 514, 523, 526, 698, 836
MfeI CAATTG 1 cut(s) 897
MflI RGATCY 1 cut(s) 43
MhlI GDGCHC 3 cut(s) 241, 399, 478
MluCI AATT 8 cut(s) 302, 312, 319, 433, 561, 867, 897, 1007
MlyI GAGTC 1 cut(s) 623
MnlI CCTC 5 cut(s) 256, 271, 763, 820, 826
MroI TCCGGA 1 cut(s) 88
MroXI GAANNNNTTC 1 cut(s) 84
MseI TTAA 7 cut(s) 50, 432, 536, 665, 692, 743, 882
MslI CAYNNNNRTG 1 cut(s) 709
MspI CCGG 2 cut(s) 89, 929
MspR9I CCNGG 1 cut(s) 929
MunI CAATTG 1 cut(s) 897
Mva1269I GAATGC 1 cut(s) 808
MwoI GCNNNNNNNGC 3 cut(s) 32, 236, 642
NciI CCSGG 1 cut(s) 929
NdeI CATATG 1 cut(s) 243
NdeII GATC 2 cut(s) 43, 169
NlaIII CATG 6 cut(s) 80, 257, 482, 602, 710, 1000
NspV TTCGAA 1 cut(s) 144
PagI TCATGA 1 cut(s) 76
PctI GAATGC 1 cut(s) 808
PdmI GAANNNNTTC 1 cut(s) 84
PfeI GAWTC 4 cut(s) 5, 517, 595, 918
PkrI GCNGC 4 cut(s) 249, 647, 676, 794
PleI GAGTC 1 cut(s) 622
PpsI GAGTC 1 cut(s) 622
Ppu21I YACGTR 1 cut(s) 911
PshBI ATTAAT 1 cut(s) 50
PsuI RGATCY 1 cut(s) 43
RsaI GTAC 4 cut(s) 328, 913, 954, 1005
RsaNI GTAC 4 cut(s) 327, 912, 953, 1004
RseI CAYNNNNRTG 1 cut(s) 709
SaqAI TTAA 7 cut(s) 50, 432, 536, 665, 692, 743, 882
SatI GCNGC 4 cut(s) 248, 646, 675, 793
Sau3AI GATC 2 cut(s) 43, 169
ScaI AGTACT 1 cut(s) 328
SchI GAGTC 1 cut(s) 623
ScrFI CCNGG 1 cut(s) 929
SduI GDGCHC 3 cut(s) 241, 399, 478
SfaNI GCATC 1 cut(s) 714
SfuI TTCGAA 1 cut(s) 144
SmiMI CAYNNNNRTG 1 cut(s) 709
SpeI ACTAGT 1 cut(s) 575
Sse9I AATT 8 cut(s) 302, 312, 319, 433, 561, 867, 897, 1007
SsiI CCGC 3 cut(s) 136, 524, 646
SspMI CTAG 2 cut(s) 576, 783
StyD4I CCNGG 1 cut(s) 927
TaaI ACNGT 3 cut(s) 98, 630, 670
TaiI ACGT 2 cut(s) 458, 913
TaqI TCGA 4 cut(s) 57, 144, 172, 617
TasI AATT 8 cut(s) 302, 312, 319, 433, 561, 867, 897, 1007
TatI WGTACW 1 cut(s) 326
TauI GCSGC 1 cut(s) 648
TfiI GAWTC 4 cut(s) 5, 517, 595, 918
Tru1I TTAA 7 cut(s) 50, 432, 536, 665, 692, 743, 882
Tru9I TTAA 7 cut(s) 50, 432, 536, 665, 692, 743, 882
TscAI CASTG 1 cut(s) 766
TseI GCWGC 3 cut(s) 247, 674, 792
TspDTI ATGAA 7 cut(s) 93, 168, 305, 426, 587, 699, 723
TspGWI ACGGA 1 cut(s) 863
TspRI CASTG 1 cut(s) 766
VneI GTGCAC 1 cut(s) 237
VspI ATTAAT 1 cut(s) 50
XapI RAATTY 2 cut(s) 302, 312
XmiI GTMKAC 1 cut(s) 269
XmnI GAANNNNTTC 1 cut(s) 84
XspI CTAG 2 cut(s) 576, 783
ZrmI AGTACT 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.