Rh3CG289500

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000325
Physical Location & Seq
Forward (+)
29349633 .. 29350857
1225 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG289500.1

Sequence Viewer

Length: 867 bp
ATGAAATATGAATACAAAGTATCTTATCGTGGTGTTGCTCGAGAGCATTTGGTAAAATTTGATGCTTCAGAGCAAACAATAACTTGTAGTTGCATGAAGTTTAATTTTGTTGGGATTTTATGCCGTCATGCATTGAAAGTGTTGGATAGGAAGAACGTGAGAAGAATCCCTCCTACTTGCATATTAAATCGATGGAGTAAAGAAGCTAAGGCAAGAAGCATCACTTGTTATCATGGACCAAAGACTAATGAAAATCTCAAGCAGTCGATTGGAAAGCAGTACAGCCATTTGTGTCGTAATTATCGTGAGATTGCATCCTTTGCCGCAGAACATGAGGAATTAACAACGTATGCAGATGAATATGCCATCGAGTTGCTTAAAAATTTGGAAGAAAAGAAGAAGAAACTTTTGAAAGAAGATGCATGGGTGATTCAAACTTCAGATGTTGGAGCTTTGGAAGGTGAAGTATCAAATGCACGTGGAGTTAAAAGAAAAGCTACTGTTGGACGACCACGTGGTCGTCATGGTAGATTTAAAGGTGTTCTTGAAGGGAAAAATTGTAAAGCCACATTTAAATCGTCAACATCTGTAGCAAGTAAAGCCGCAAAGAAACAACTATCCTTCCAGGACTCTATTCCTATTAGTGACAATTGCGAGCAACAAGAAGTCAATGAATATGAAGTTCCAATGCTTGATTTTGCAACTCAAGAATCCAATCTTAGCGCTGGTACCCAAGTATCAATTTATGGTACAAGTGTAACTTTGCAAGATGGCTTTTCTTTCACTCAAATGCTCCAGGAAATTTCAATGAATCAAGCTAATTCTTCACAAAGTAATGAAGAAGGCAAAAAGCAGCTGGGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

288

Amino Acids

32.46

Weight (kDa)

9.12

Isoelectric Point (pI)

35.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 25 - 51 6.7e-06 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 516
Acc65I GGTACC 1 cut(s) 728
AccB1I GGYRCC 1 cut(s) 728
AciI CCGC 2 cut(s) 324, 603
AcsI RAATTY 3 cut(s) 56, 382, 801
AcuI CTGAAG 2 cut(s) 51, 423
AcvI CACGTG 2 cut(s) 479, 515
AfaI GTAC 3 cut(s) 281, 730, 751
AfeI AGCGCT 1 cut(s) 724
AgsI TTSAA 5 cut(s) 136, 412, 434, 548, 807
AjnI CCWGG 2 cut(s) 624, 795
AluBI AGCT 5 cut(s) 206, 452, 497, 818, 856
AluI AGCT 5 cut(s) 206, 452, 497, 818, 856
Ama87I CYCGRG 1 cut(s) 39
Aor51HI AGCGCT 1 cut(s) 724
ApeKI GCWGC 1 cut(s) 853
ApoI RAATTY 3 cut(s) 56, 382, 801
Asp718I GGTACC 1 cut(s) 728
AspLEI GCGC 1 cut(s) 725
AspS9I GGNCC 1 cut(s) 236
AsuHPI GGTGA 2 cut(s) 439, 473
AvaI CYCGRG 1 cut(s) 39
AvaII GGWCC 1 cut(s) 236
BaeI ACNNNNGTAYC 6 cut(s) 720, 720, 741, 753, 753, 774
BanI GGYRCC 1 cut(s) 728
BbrPI CACGTG 2 cut(s) 479, 515
BccI CCATC 3 cut(s) 186, 374, 764
BceAI ACGGC 1 cut(s) 108
BciT130I CCWGG 2 cut(s) 626, 797
BfmI CTRYAG 1 cut(s) 588
BfoI RGCGCY 1 cut(s) 726
BisI GCNGC 3 cut(s) 324, 603, 854
BlsI GCNGC 3 cut(s) 325, 604, 855
Bme1390I CCNGG 2 cut(s) 626, 797
Bme18I GGWCC 1 cut(s) 236
BmeT110I CYCGRG 1 cut(s) 39
BmgT120I GGNCC 1 cut(s) 236
BmiI GGNNCC 1 cut(s) 730
BmrFI CCNGG 2 cut(s) 626, 797
BmsI GCATC 4 cut(s) 52, 228, 323, 409
BpmI CTGGAG 1 cut(s) 779
Bpu10I CCTNAGC 1 cut(s) 207
BpuEI CTTGAG 2 cut(s) 242, 690
Bsa29I ATCGAT 1 cut(s) 190
BsaAI YACGTR 2 cut(s) 479, 515
BseBI CCWGG 2 cut(s) 626, 797
BseCI ATCGAT 1 cut(s) 190
BseGI GGATG 1 cut(s) 314
BseYI CCCAGC 1 cut(s) 856
BshNI GGYRCC 1 cut(s) 728
BshVI ATCGAT 1 cut(s) 190
BsiHKCI CYCGRG 1 cut(s) 39
BsoBI CYCGRG 1 cut(s) 39
BspACI CCGC 2 cut(s) 324, 603
BspDI ATCGAT 1 cut(s) 190
BspLI GGNNCC 1 cut(s) 730
BspT107I GGYRCC 1 cut(s) 728
Bst2UI CCWGG 2 cut(s) 626, 797
Bst4CI ACNGT 1 cut(s) 502
BstAPI GCANNNNNTGC 1 cut(s) 320
BstBAI YACGTR 2 cut(s) 479, 515
BstC8I GCNNGC 1 cut(s) 656
BstDEI CTNAG 2 cut(s) 207, 719
BstF5I GGATG 1 cut(s) 314
BstH2I RGCGCY 1 cut(s) 726
BstHHI GCGC 1 cut(s) 725
BstMWI GCNNNNNNNGC 2 cut(s) 320, 599
BstNI CCWGG 2 cut(s) 626, 797
BstSCI CCNGG 2 cut(s) 624, 795
BstSFI CTRYAG 1 cut(s) 588
Bsu15I ATCGAT 1 cut(s) 190
BsuTUI ATCGAT 1 cut(s) 190
BtsCI GGATG 1 cut(s) 314
Cac8I GCNNGC 1 cut(s) 656
CfoI GCGC 1 cut(s) 725
Cfr13I GGNCC 1 cut(s) 236
ClaI ATCGAT 1 cut(s) 190
Csp6I GTAC 3 cut(s) 280, 729, 750
CviAII CATG 6 cut(s) 94, 128, 233, 332, 423, 524
CviJI RGCY 9 cut(s) 206, 285, 452, 497, 566, 602, 774, 818, 856
CviKI_1 RGCY 9 cut(s) 206, 285, 452, 497, 566, 602, 774, 818, 856
CviQI GTAC 3 cut(s) 280, 729, 750
DdeI CTNAG 2 cut(s) 207, 719
DraI TTTAAA 2 cut(s) 535, 574
DrdI GACNNNNNNGTC 1 cut(s) 516
DseDI GACNNNNNNGTC 1 cut(s) 516
Eco47I GGWCC 1 cut(s) 236
Eco47III AGCGCT 1 cut(s) 724
Eco57I CTGAAG 2 cut(s) 51, 423
Eco72I CACGTG 2 cut(s) 479, 515
Eco88I CYCGRG 1 cut(s) 39
EcoRII CCWGG 2 cut(s) 624, 795
EcoT22I ATGCAT 2 cut(s) 133, 424
FaeI CATG 6 cut(s) 97, 131, 236, 335, 426, 527
FalI AAGNNNNNCTT 6 cut(s) 208, 240, 528, 560, 745, 777
FatI CATG 6 cut(s) 93, 127, 232, 331, 422, 523
Fnu4HI GCNGC 3 cut(s) 324, 603, 854
FokI GGATG 1 cut(s) 301
Fsp4HI GCNGC 3 cut(s) 324, 603, 854
GlaI GCGC 1 cut(s) 724
GluI GCNGC 3 cut(s) 324, 603, 854
GsaI CCCAGC 1 cut(s) 860
GsuI CTGGAG 1 cut(s) 779
HaeII RGCGCY 1 cut(s) 726
HhaI GCGC 1 cut(s) 725
Hin1II CATG 6 cut(s) 97, 131, 236, 335, 426, 527
Hin6I GCGC 1 cut(s) 723
HinP1I GCGC 1 cut(s) 723
HincII GTYRAC 1 cut(s) 582
HindII GTYRAC 1 cut(s) 582
HinfI GANTC 5 cut(s) 165, 430, 629, 710, 811
HphI GGTGA 2 cut(s) 439, 473
Hpy166II GTNNAC 1 cut(s) 582
Hpy188I TCNGA 2 cut(s) 70, 442
Hpy188III TCNNGA 4 cut(s) 41, 305, 545, 707
Hpy8I GTNNAC 1 cut(s) 582
HpyAV CCTTC 4 cut(s) 452, 542, 631, 836
HpyCH4III ACNGT 1 cut(s) 502
HpyCH4IV ACGT 4 cut(s) 156, 347, 478, 514
HpyCH4V TGCA 9 cut(s) 93, 131, 180, 314, 353, 422, 476, 701, 766
HpyF10VI GCNNNNNNNGC 2 cut(s) 320, 599
HpyF3I CTNAG 2 cut(s) 207, 719
HpySE526I ACGT 4 cut(s) 156, 347, 478, 514
Hsp92II CATG 6 cut(s) 97, 131, 236, 335, 426, 527
HspAI GCGC 1 cut(s) 723
KpnI GGTACC 1 cut(s) 732
LmnI GCTCC 2 cut(s) 449, 798
LpnPI CCDG 6 cut(s) 611, 638, 711, 782, 809, 842
LweI GCATC 4 cut(s) 52, 228, 323, 409
MaeII ACGT 4 cut(s) 156, 347, 478, 514
MaeIII GTNAC 2 cut(s) 644, 757
MboII GAAGA 8 cut(s) 163, 174, 401, 409, 412, 428, 816, 851
MfeI CAATTG 1 cut(s) 649
MlyI GAGTC 1 cut(s) 623
MmeI TCCRAC 3 cut(s) 123, 427, 484
MnlI CCTC 2 cut(s) 180, 328
Mph1103I ATGCAT 2 cut(s) 133, 424
MseI TTAA 7 cut(s) 102, 185, 341, 378, 486, 534, 573
MslI CAYNNNNRTG 1 cut(s) 788
MspA1I CMGCKG 1 cut(s) 856
MspR9I CCNGG 2 cut(s) 626, 797
MunI CAATTG 1 cut(s) 649
MvaI CCWGG 2 cut(s) 626, 797
MwoI GCNNNNNNNGC 2 cut(s) 320, 599
NlaIII CATG 6 cut(s) 97, 131, 236, 335, 426, 527
NlaIV GGNNCC 1 cut(s) 730
NmuCI GTSAC 1 cut(s) 644
NsiI ATGCAT 2 cut(s) 133, 424
PaeR7I CTCGAG 1 cut(s) 39
PcsI WCGNNNNNNNCGW 1 cut(s) 301
PfeI GAWTC 4 cut(s) 165, 430, 710, 811
PfoI TCCNGGA 2 cut(s) 624, 795
PkrI GCNGC 3 cut(s) 325, 604, 855
PleI GAGTC 1 cut(s) 623
PmaCI CACGTG 2 cut(s) 479, 515
PmlI CACGTG 2 cut(s) 479, 515
PpsI GAGTC 1 cut(s) 623
Ppu21I YACGTR 2 cut(s) 479, 515
Psp6I CCWGG 2 cut(s) 624, 795
PspCI CACGTG 2 cut(s) 479, 515
PspFI CCCAGC 1 cut(s) 856
PspGI CCWGG 2 cut(s) 624, 795
PspN4I GGNNCC 1 cut(s) 730
PspPI GGNCC 1 cut(s) 236
PvuII CAGCTG 1 cut(s) 856
RsaI GTAC 3 cut(s) 281, 730, 751
RsaNI GTAC 3 cut(s) 280, 729, 750
RseI CAYNNNNRTG 1 cut(s) 788
SaqAI TTAA 7 cut(s) 102, 185, 341, 378, 486, 534, 573
SatI GCNGC 3 cut(s) 324, 603, 854
Sau96I GGNCC 1 cut(s) 236
SchI GAGTC 1 cut(s) 623
ScrFI CCNGG 2 cut(s) 626, 797
SfaNI GCATC 4 cut(s) 52, 228, 323, 409
SfcI CTRYAG 1 cut(s) 588
Sfr274I CTCGAG 1 cut(s) 39
SinI GGWCC 1 cut(s) 236
SlaI CTCGAG 1 cut(s) 39
SmiI ATTTAAAT 1 cut(s) 574
SmiMI CAYNNNNRTG 1 cut(s) 788
SmlI CTYRAG 3 cut(s) 39, 257, 705
SmoI CTYRAG 3 cut(s) 39, 257, 705
SsiI CCGC 2 cut(s) 324, 603
StyD4I CCNGG 2 cut(s) 624, 795
SwaI ATTTAAAT 1 cut(s) 574
TaaI ACNGT 1 cut(s) 502
TaiI ACGT 4 cut(s) 159, 350, 481, 517
TaqI TCGA 4 cut(s) 40, 190, 266, 369
TatI WGTACW 1 cut(s) 279
TauI GCSGC 2 cut(s) 326, 605
TfiI GAWTC 4 cut(s) 165, 430, 710, 811
Tru1I TTAA 7 cut(s) 102, 185, 341, 378, 486, 534, 573
Tru9I TTAA 7 cut(s) 102, 185, 341, 378, 486, 534, 573
TseFI GTSAC 1 cut(s) 644
TseI GCWGC 1 cut(s) 853
Tsp45I GTSAC 1 cut(s) 644
TspDTI ATGAA 9 cut(s) 17, 24, 110, 264, 372, 687, 693, 824, 852
VpaK11BI GGWCC 1 cut(s) 236
XapI RAATTY 3 cut(s) 56, 382, 801
XhoI CTCGAG 1 cut(s) 39
Zsp2I ATGCAT 2 cut(s) 133, 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.