Rh4CG151000

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000325
Physical Location & Seq
Reverse (-)
33270147 .. 33273999
3853 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG151000.1

Sequence Viewer

Length: 825 bp
ATGAGTATTACTAGTTATCATCCTACTGAGATTCACGGTAATCCTAAGGAGTCGATTGGCAAACGGTATGGCTACTTGTGCCGCACTTGTCGTGATATTTTAACTGTTGCAGTAGATGATGAAGAGTTAACGAGATATGCACATGAATGTTTGGTTGAGATGCTCAAAGGCTTAGAGTTAATAAAGAAAAATCGCACTGAGAAAGAGGGGAGAAGTTCTAGTGATTGCAGCGAAGTGAATACTACTTTTGGTCAAAGTGAAGAGGTTGAGGGAATAGTTCAATCTAATGCTTGTGAAACAACAATTGTCTGTGGAGTTAAAAGAAAAGCTACAATTGGTCATCCACGTACCAGATTCAAAGACCCGGCTGAACAAAAAAAGAGGAAAGTACCAAAGAAAAGCACAAAAGCTCCCACAAGAAGGAAAATACCCATGCAGGAATTTGAGAGCATTTTGGTCATTTCAGAAACACACCAAAATAGTGAACGTGATGTTCAACTATCTGGTGTTTTGACTCAACTTGTCGTGGATTGTCGCCGCCTTCCTCGGCGCCATCTTCTTCAGGTAGTCGTGGATCCTCGCCGGGCCTTCCCCTGCGCCTTCTTCTTCAGCTCGTCGCTGGTGATCTCCTTCAATTCATGGATTCTTGTCACTGAAAGGTATGACATCAATGAAAGCATAAATGAGATGGAGAAGCAAACTTTGGTGACAGGTTTAGTATTTCACCCTCATAGGGATCGTAAGATTGGATTAGGAATCAAAGATATAAAGGCTATGCTCTTGGGGCTCAGGTCTGGAGCTTTTTGGTGCATGCAAATTAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

274

Amino Acids

31.34

Weight (kDa)

9.2

Isoelectric Point (pI)

47.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 549
AciI CCGC 2 cut(s) 82, 538
AclWI GGATC 3 cut(s) 569, 582, 744
AcsI RAATTY 1 cut(s) 440
AcuI CTGAAG 2 cut(s) 545, 592
AcyI GRCGYC 1 cut(s) 550
AfaI GTAC 2 cut(s) 349, 390
AfiI CCNNNNNNNGG 2 cut(s) 420, 733
AgsI TTSAA 4 cut(s) 281, 358, 497, 634
AhlI ACTAGT 1 cut(s) 11
AjuI GAANNNNNNNTTGG 2 cut(s) 686, 718
AluBI AGCT 4 cut(s) 329, 410, 612, 800
AluI AGCT 4 cut(s) 329, 410, 612, 800
AlwI GGATC 3 cut(s) 569, 582, 744
AoxI GGCC 1 cut(s) 585
ApeKI GCWGC 1 cut(s) 228
ApoI RAATTY 1 cut(s) 440
AspLEI GCGC 2 cut(s) 552, 599
AspS9I GGNCC 1 cut(s) 585
AsuC2I CCSGG 2 cut(s) 365, 584
AsuHPI GGTGA 3 cut(s) 634, 716, 718
AxyI CCTNAGG 1 cut(s) 45
BamHI GGATCC 1 cut(s) 574
BanI GGYRCC 1 cut(s) 549
BanII GRGCYC 1 cut(s) 789
BbvI GCAGC 1 cut(s) 240
BccI CCATC 2 cut(s) 561, 682
BcnI CCSGG 2 cut(s) 365, 584
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 2 cut(s) 12, 219
BfoI RGCGCY 1 cut(s) 553
BisI GCNGC 3 cut(s) 82, 229, 538
BlsI GCNGC 3 cut(s) 83, 230, 539
Bme1390I CCNGG 2 cut(s) 365, 584
BmgT120I GGNCC 1 cut(s) 585
BmiI GGNNCC 2 cut(s) 551, 576
BmrFI CCNGG 2 cut(s) 365, 584
BmsI GCATC 1 cut(s) 150
BpmI CTGGAG 1 cut(s) 816
Bpu10I CCTNAGC 1 cut(s) 788
BpuMI CCSGG 2 cut(s) 365, 584
BsaAI YACGTR 1 cut(s) 347
BsaHI GRCGYC 1 cut(s) 550
BsaJI CCNNGG 1 cut(s) 545
BsaXI ACNNNNNCTCC 2 cut(s) 394, 424
Bsc4I CCNNNNNNNGG 2 cut(s) 420, 733
Bse21I CCTNAGG 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 545
BseGI GGATG 2 cut(s) 19, 340
BseLI CCNNNNNNNGG 2 cut(s) 420, 733
BseMII CTCAG 3 cut(s) 18, 189, 802
BseXI GCAGC 1 cut(s) 240
BshFI GGCC 1 cut(s) 587
BshNI GGYRCC 1 cut(s) 549
BsiSI CCGG 2 cut(s) 365, 583
BslI CCNNNNNNNGG 2 cut(s) 420, 733
BsnI GGCC 1 cut(s) 587
Bsp1286I GDGCHC 1 cut(s) 789
Bsp143I GATC 3 cut(s) 574, 624, 736
BspACI CCGC 2 cut(s) 82, 538
BspANI GGCC 1 cut(s) 587
BspCNI CTCAG 3 cut(s) 19, 190, 801
BspLI GGNNCC 2 cut(s) 551, 576
BspPI GGATC 3 cut(s) 569, 582, 744
BspT107I GGYRCC 1 cut(s) 549
BssECI CCNNGG 1 cut(s) 545
BssMI GATC 3 cut(s) 574, 624, 736
BssNI GRCGYC 1 cut(s) 550
Bst4CI ACNGT 3 cut(s) 38, 66, 106
Bst6I CTCTTC 2 cut(s) 117, 255
BstACI GRCGYC 1 cut(s) 550
BstBAI YACGTR 1 cut(s) 347
BstC8I GCNNGC 1 cut(s) 812
BstDEI CTNAG 5 cut(s) 27, 45, 172, 198, 788
BstF5I GGATG 2 cut(s) 19, 340
BstH2I RGCGCY 1 cut(s) 553
BstHHI GCGC 2 cut(s) 552, 599
BstKTI GATC 3 cut(s) 577, 627, 739
BstMBI GATC 3 cut(s) 574, 624, 736
BstMWI GCNNNNNNNGC 2 cut(s) 78, 784
BstNSI RCATGY 1 cut(s) 814
BstSCI CCNGG 2 cut(s) 363, 582
BstV1I GCAGC 1 cut(s) 240
BstX2I RGATCY 1 cut(s) 574
BstYI RGATCY 1 cut(s) 574
Bsu36I CCTNAGG 1 cut(s) 45
BsuRI GGCC 1 cut(s) 587
BtsCI GGATG 2 cut(s) 19, 340
BtsIMutI CAGTG 2 cut(s) 195, 651
Cac8I GCNNGC 1 cut(s) 812
CfoI GCGC 2 cut(s) 552, 599
Cfr13I GGNCC 1 cut(s) 585
Csp6I GTAC 2 cut(s) 348, 389
CviAII CATG 4 cut(s) 143, 433, 639, 811
CviQI GTAC 2 cut(s) 348, 389
DdeI CTNAG 5 cut(s) 27, 45, 172, 198, 788
DinI GGCGCC 1 cut(s) 551
DpnI GATC 3 cut(s) 576, 626, 738
DpnII GATC 3 cut(s) 574, 624, 736
Eam1104I CTCTTC 2 cut(s) 117, 255
EarI CTCTTC 2 cut(s) 117, 255
Eco24I GRGCYC 1 cut(s) 789
Eco57I CTGAAG 2 cut(s) 545, 592
Eco81I CCTNAGG 1 cut(s) 45
EcoT38I GRGCYC 1 cut(s) 789
EgeI GGCGCC 1 cut(s) 551
EheI GGCGCC 1 cut(s) 551
FaeI CATG 4 cut(s) 146, 436, 642, 814
FatI CATG 4 cut(s) 142, 432, 638, 810
Fnu4HI GCNGC 3 cut(s) 82, 229, 538
FokI GGATG 2 cut(s) 6, 327
FriOI GRGCYC 1 cut(s) 789
Fsp4HI GCNGC 3 cut(s) 82, 229, 538
FspBI CTAG 2 cut(s) 12, 219
GlaI GCGC 2 cut(s) 551, 598
GluI GCNGC 3 cut(s) 82, 229, 538
GsuI CTGGAG 1 cut(s) 816
HaeII RGCGCY 1 cut(s) 553
HaeIII GGCC 1 cut(s) 587
HapII CCGG 2 cut(s) 365, 583
HhaI GCGC 2 cut(s) 552, 599
Hin1I GRCGYC 1 cut(s) 550
Hin1II CATG 4 cut(s) 146, 436, 642, 814
Hin6I GCGC 2 cut(s) 550, 597
HinP1I GCGC 2 cut(s) 550, 597
HincII GTYRAC 1 cut(s) 129
HindII GTYRAC 1 cut(s) 129
HinfI GANTC 6 cut(s) 31, 50, 354, 514, 643, 756
HpaI GTTAAC 1 cut(s) 129
HpaII CCGG 2 cut(s) 365, 583
HphI GGTGA 3 cut(s) 634, 716, 718
Hpy166II GTNNAC 2 cut(s) 129, 485
Hpy188I TCNGA 1 cut(s) 466
Hpy188III TCNNGA 2 cut(s) 92, 795
Hpy8I GTNNAC 2 cut(s) 129, 485
Hpy99I CGWCG 1 cut(s) 619
HpyAV CCTTC 5 cut(s) 414, 551, 598, 610, 640
HpyCH4III ACNGT 3 cut(s) 38, 66, 106
HpyCH4IV ACGT 2 cut(s) 346, 487
HpyCH4V TGCA 6 cut(s) 110, 140, 228, 436, 810, 814
HpyF10VI GCNNNNNNNGC 2 cut(s) 78, 784
HpyF3I CTNAG 5 cut(s) 27, 45, 172, 198, 788
HpySE526I ACGT 2 cut(s) 346, 487
Hsp92I GRCGYC 1 cut(s) 550
Hsp92II CATG 4 cut(s) 146, 436, 642, 814
HspAI GCGC 2 cut(s) 550, 597
KasI GGCGCC 1 cut(s) 549
KspAI GTTAAC 1 cut(s) 129
Kzo9I GATC 3 cut(s) 574, 624, 736
LmnI GCTCC 2 cut(s) 415, 797
Lsp1109I GCAGC 1 cut(s) 240
LweI GCATC 1 cut(s) 150
MaeI CTAG 2 cut(s) 12, 219
MaeII ACGT 2 cut(s) 346, 487
MaeIII GTNAC 2 cut(s) 649, 706
MalI GATC 3 cut(s) 576, 626, 738
MboI GATC 3 cut(s) 574, 624, 736
MboII GAAGA 6 cut(s) 134, 272, 548, 551, 595, 598
MfeI CAATTG 2 cut(s) 303, 333
MflI RGATCY 1 cut(s) 574
MhlI GDGCHC 1 cut(s) 789
MluCI AATT 5 cut(s) 303, 333, 440, 634, 816
Mly113I GGCGCC 1 cut(s) 550
MlyI GAGTC 2 cut(s) 59, 508
MnlI CCTC 7 cut(s) 199, 256, 262, 375, 555, 588, 738
MseI TTAA 4 cut(s) 101, 128, 179, 318
MslI CAYNNNNRTG 1 cut(s) 145
MspI CCGG 2 cut(s) 365, 583
MspR9I CCNGG 2 cut(s) 365, 584
MunI CAATTG 2 cut(s) 303, 333
MwoI GCNNNNNNNGC 2 cut(s) 78, 784
NarI GGCGCC 1 cut(s) 550
NciI CCSGG 2 cut(s) 365, 584
NdeII GATC 3 cut(s) 574, 624, 736
NlaIII CATG 4 cut(s) 146, 436, 642, 814
NlaIV GGNNCC 2 cut(s) 551, 576
NmeAIII GCCGAG 1 cut(s) 526
NmuCI GTSAC 2 cut(s) 649, 706
NspI RCATGY 1 cut(s) 814
PaeI GCATGC 1 cut(s) 814
PfeI GAWTC 4 cut(s) 31, 354, 643, 756
PkrI GCNGC 3 cut(s) 83, 230, 539
PleI GAGTC 2 cut(s) 58, 508
PluTI GGCGCC 1 cut(s) 553
PpsI GAGTC 2 cut(s) 58, 508
Ppu21I YACGTR 1 cut(s) 347
PspN4I GGNNCC 2 cut(s) 551, 576
PspPI GGNCC 1 cut(s) 585
PsuI RGATCY 1 cut(s) 574
RsaI GTAC 2 cut(s) 349, 390
RsaNI GTAC 2 cut(s) 348, 389
RseI CAYNNNNRTG 1 cut(s) 145
SaqAI TTAA 4 cut(s) 101, 128, 179, 318
SatI GCNGC 3 cut(s) 82, 229, 538
Sau3AI GATC 3 cut(s) 574, 624, 736
Sau96I GGNCC 1 cut(s) 585
SchI GAGTC 2 cut(s) 59, 508
ScrFI CCNGG 2 cut(s) 365, 584
SduI GDGCHC 1 cut(s) 789
SfaNI GCATC 1 cut(s) 150
SfoI GGCGCC 1 cut(s) 551
SmiMI CAYNNNNRTG 1 cut(s) 145
SpeI ACTAGT 1 cut(s) 11
SphI GCATGC 1 cut(s) 814
Sse9I AATT 5 cut(s) 303, 333, 440, 634, 816
SsiI CCGC 2 cut(s) 82, 538
SspDI GGCGCC 1 cut(s) 549
SspMI CTAG 2 cut(s) 12, 219
StyD4I CCNGG 2 cut(s) 363, 582
TaaI ACNGT 3 cut(s) 38, 66, 106
TaiI ACGT 2 cut(s) 349, 490
TaqI TCGA 1 cut(s) 53
TasI AATT 5 cut(s) 303, 333, 440, 634, 816
TauI GCSGC 2 cut(s) 84, 540
TfiI GAWTC 4 cut(s) 31, 354, 643, 756
Tru1I TTAA 4 cut(s) 101, 128, 179, 318
Tru9I TTAA 4 cut(s) 101, 128, 179, 318
TscAI CASTG 2 cut(s) 202, 658
TseFI GTSAC 2 cut(s) 649, 706
TseI GCWGC 1 cut(s) 228
Tsp45I GTSAC 2 cut(s) 649, 706
TspDTI ATGAA 4 cut(s) 135, 159, 627, 687
TspRI CASTG 2 cut(s) 202, 658
XapI RAATTY 1 cut(s) 440
XceI RCATGY 1 cut(s) 814
XspI CTAG 2 cut(s) 12, 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.