RLG00000036909

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000325
Physical Location & Seq
Reverse (-)
86446822 .. 86450391
3570 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036909

Sequence Viewer

Length: 1014 bp
ATGTTGGACTCTACGTCTTCCCCTGGTCCTCCTCCCTGTCTATCAGTATTCTTCTTTTCTTCTTCTTTCTCTGCACGCCAAAACAAACCCAGTCTCCTCCTTCCATCATCCAACAACATTGCTGCAGACTTTCTTCGTCTTATGGTTTTGCTCATGGACTTGGAAGATAATTGCAAAGAGGATGAAATTCAAACAAACTCACGTCGAAAGTTGGATTTTGAAAATGGAACTGACATGAACACTTGTGTGGAAGATGAAAGTTTGGAAGAAAAGATAGCAACAAGAGCTGCAGGGTCTAAAAGAGCCTATGAACTTGTTCTATCCAGATTGGACAGCATACGAGAAGATGTGGATACATGTTTGAAAGAAGAAGCCGAGGAAAACTCTACTCAACTGATTTCACCTACCACCAACAATGCATCAGAGCTTAATGAGGTGGTGTGTGTTGATGATCAAGTTAAAGGGATTAAAGTTAAAGAGAAACTTAAAGGTATTGGTTGTTCAACTAGGCCTAAAAATGCTCTAGAGAAGCTAACCATGGCAAAGAGGAGAAGACTTGAAAATAAAGATATGAACTCTTCATCTGTTGCTTCCAAAACTGCATCTACAATGCAAAGTCCTTCTATGACGCAAAGTGTTTCAGCGACACAACATTCTTCTTCTACACAGCCTCTTCTACCTCTTTCTATGCAAAGGGTTTCTAATGTGCAACTTACCTTGCCTCTGTCACAACATGTTCTGCCTTCAGCACCCTTATTGCAACTGGAACCTAATTGTGGTAAGTTAACAATGGACATGCCCATTAAAGAGAGAGAATTGGCTCAGCCTCCATTTATGCAGAAGCTTTCCAGTGGCAATAGTTTAGGCATGACTTTTCAAGCTAACAAGCCTCAACTAATGCCTTTTGCACCACAAGTTCATTTTCCCCAGAGACAATCCAAAGTAGCAGCAAGCATGGACAATGGCCAGATGGTCAAGGCTAGGGAGTGGTTGCAATTTCGCAAGCAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

338

Amino Acids

37.41

Weight (kDa)

7.55

Isoelectric Point (pI)

51.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 964
AcsI RAATTY 1 cut(s) 186
AcuI CTGAAG 1 cut(s) 729
AfiI CCNNNNNNNGG 1 cut(s) 776
AflIII ACRYGT 2 cut(s) 356, 733
AgsI TTSAA 6 cut(s) 191, 221, 364, 504, 560, 878
AhdI GACNNNNNGTC 1 cut(s) 13
AjiI CACGTC 1 cut(s) 203
AjnI CCWGG 1 cut(s) 22
AleI CACNNNNGTG 1 cut(s) 245
AluBI AGCT 5 cut(s) 287, 427, 532, 844, 881
AluI AGCT 5 cut(s) 287, 427, 532, 844, 881
Alw26I GTCTC 2 cut(s) 98, 925
AoxI GGCC 2 cut(s) 509, 964
ApeKI GCWGC 3 cut(s) 122, 287, 947
ApoI RAATTY 1 cut(s) 186
Asp700I GAANNNNTTC 1 cut(s) 315
AspS9I GGNCC 1 cut(s) 26
AsuHPI GGTGA 1 cut(s) 393
AvaII GGWCC 1 cut(s) 26
BalI TGGCCA 1 cut(s) 966
BbsI GAAGAC 2 cut(s) 9, 559
BbvI GCAGC 3 cut(s) 109, 274, 959
BccI CCATC 2 cut(s) 112, 964
BciT130I CCWGG 1 cut(s) 24
BciVI GTATCC 1 cut(s) 346
BclI TGATCA 1 cut(s) 451
BcoDI GTCTC 2 cut(s) 98, 925
BfaI CTAG 3 cut(s) 507, 524, 981
BfmI CTRYAG 2 cut(s) 123, 288
BfuI GTATCC 1 cut(s) 346
BisI GCNGC 3 cut(s) 123, 288, 948
BlpI GCTNAGC 1 cut(s) 822
BlsI GCNGC 3 cut(s) 124, 289, 949
Bme1390I CCNGG 1 cut(s) 24
Bme18I GGWCC 1 cut(s) 26
BmeRI GACNNNNNGTC 1 cut(s) 13
BmgBI CACGTC 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 26
BmiI GGNNCC 1 cut(s) 768
BmrFI CCNGG 1 cut(s) 24
BmrI ACTGGG 1 cut(s) 84
BmsI GCATC 2 cut(s) 428, 611
BmuI ACTGGG 1 cut(s) 84
BpiI GAAGAC 2 cut(s) 9, 559
BplI GAGNNNNNCTC 2 cut(s) 368, 400
Bpu1102I GCTNAGC 1 cut(s) 822
BsaJI CCNNGG 3 cut(s) 22, 375, 537
BsaXI ACNNNNNCTCC 2 cut(s) 78, 108
Bsc4I CCNNNNNNNGG 1 cut(s) 776
Bse1I ACTGG 3 cut(s) 90, 768, 849
Bse3DI GCAATG 1 cut(s) 117
BseBI CCWGG 1 cut(s) 24
BseDI CCNNGG 3 cut(s) 22, 375, 537
BseGI GGATG 2 cut(s) 107, 187
BseLI CCNNNNNNNGG 1 cut(s) 776
BseMI GCAATG 1 cut(s) 117
BseMII CTCAG 1 cut(s) 836
BseNI ACTGG 3 cut(s) 90, 768, 849
BseRI GAGGAG 3 cut(s) 21, 86, 562
BseXI GCAGC 3 cut(s) 109, 274, 959
BsgI GTGCAG 1 cut(s) 57
BshFI GGCC 2 cut(s) 511, 966
BslI CCNNNNNNNGG 1 cut(s) 776
BsmAI GTCTC 2 cut(s) 98, 925
BsnI GGCC 2 cut(s) 511, 966
Bsp143I GATC 1 cut(s) 451
Bsp1720I GCTNAGC 1 cut(s) 822
Bsp19I CCATGG 1 cut(s) 537
BspANI GGCC 2 cut(s) 511, 966
BspCNI CTCAG 1 cut(s) 835
BspLI GGNNCC 1 cut(s) 768
BspMAI CTGCAG 2 cut(s) 127, 292
BsrDI GCAATG 1 cut(s) 117
BsrI ACTGG 3 cut(s) 90, 768, 849
BssECI CCNNGG 3 cut(s) 22, 375, 537
BssMI GATC 1 cut(s) 451
BssT1I CCWWGG 1 cut(s) 537
Bst2UI CCWGG 1 cut(s) 24
Bst6I CTCTTC 2 cut(s) 583, 678
BstC8I GCNNGC 3 cut(s) 76, 952, 1004
BstDEI CTNAG 1 cut(s) 822
BstDSI CCRYGG 1 cut(s) 537
BstF5I GGATG 2 cut(s) 107, 187
BstKTI GATC 1 cut(s) 454
BstMAI GTCTC 2 cut(s) 98, 925
BstMBI GATC 1 cut(s) 451
BstMWI GCNNNNNNNGC 1 cut(s) 284
BstNI CCWGG 1 cut(s) 24
BstNSI RCATGY 3 cut(s) 360, 737, 799
BstSCI CCNGG 1 cut(s) 22
BstSFI CTRYAG 2 cut(s) 123, 288
BstV1I GCAGC 3 cut(s) 109, 274, 959
BstV2I GAAGAC 2 cut(s) 9, 559
BsuI GTATCC 1 cut(s) 346
BsuRI GGCC 2 cut(s) 511, 966
BtgI CCRYGG 1 cut(s) 537
BtrI CACGTC 1 cut(s) 203
BtsCI GGATG 2 cut(s) 107, 187
BtsIMutI CAGTG 1 cut(s) 856
Cac8I GCNNGC 3 cut(s) 76, 952, 1004
Cfr13I GGNCC 1 cut(s) 26
CseI GACGC 1 cut(s) 637
CviAII CATG 8 cut(s) 154, 235, 357, 538, 734, 796, 868, 955
DdeI CTNAG 1 cut(s) 822
DpnI GATC 1 cut(s) 453
DpnII GATC 1 cut(s) 451
DriI GACNNNNNGTC 1 cut(s) 13
EaeI YGGCCR 1 cut(s) 964
Eam1104I CTCTTC 2 cut(s) 583, 678
Eam1105I GACNNNNNGTC 1 cut(s) 13
EarI CTCTTC 2 cut(s) 583, 678
Eco130I CCWWGG 1 cut(s) 537
Eco147I AGGCCT 1 cut(s) 511
Eco47I GGWCC 1 cut(s) 26
Eco57I CTGAAG 1 cut(s) 729
EcoRII CCWGG 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 537
EcoT22I ATGCAT 1 cut(s) 421
ErhI CCWWGG 1 cut(s) 537
FaeI CATG 8 cut(s) 157, 238, 360, 541, 737, 799, 871, 958
FalI AAGNNNNNCTT 2 cut(s) 468, 500
FatI CATG 8 cut(s) 153, 234, 356, 537, 733, 795, 867, 954
FbaI TGATCA 1 cut(s) 451
Fnu4HI GCNGC 3 cut(s) 123, 288, 948
FokI GGATG 2 cut(s) 94, 194
Fsp4HI GCNGC 3 cut(s) 123, 288, 948
FspBI CTAG 3 cut(s) 507, 524, 981
GluI GCNGC 3 cut(s) 123, 288, 948
HaeIII GGCC 2 cut(s) 511, 966
HgaI GACGC 1 cut(s) 637
Hin1II CATG 8 cut(s) 157, 238, 360, 541, 737, 799, 871, 958
HincII GTYRAC 1 cut(s) 786
HindII GTYRAC 1 cut(s) 786
HindIII AAGCTT 1 cut(s) 842
HinfI GANTC 1 cut(s) 8
HpaI GTTAAC 1 cut(s) 786
HphI GGTGA 1 cut(s) 393
Hpy166II GTNNAC 1 cut(s) 786
Hpy188I TCNGA 1 cut(s) 424
Hpy188III TCNNGA 2 cut(s) 324, 524
Hpy8I GTNNAC 1 cut(s) 786
Hpy99I CGWCG 1 cut(s) 207
HpyAV CCTTC 3 cut(s) 110, 630, 753
HpyCH4IV ACGT 2 cut(s) 14, 202
HpyF10VI GCNNNNNNNGC 1 cut(s) 284
HpyF3I CTNAG 1 cut(s) 822
HpySE526I ACGT 2 cut(s) 14, 202
Hsp92II CATG 8 cut(s) 157, 238, 360, 541, 737, 799, 871, 958
Ksp22I TGATCA 1 cut(s) 451
KspAI GTTAAC 1 cut(s) 786
Kzo9I GATC 1 cut(s) 451
Lsp1109I GCAGC 3 cut(s) 109, 274, 959
LweI GCATC 2 cut(s) 428, 611
MaeI CTAG 3 cut(s) 507, 524, 981
MaeII ACGT 2 cut(s) 14, 202
MaeIII GTNAC 1 cut(s) 726
MalI GATC 1 cut(s) 453
MboI GATC 1 cut(s) 451
MlsI TGGCCA 1 cut(s) 966
MluCI AATT 6 cut(s) 169, 186, 772, 815, 995, 1009
MluNI TGGCCA 1 cut(s) 966
MlyI GAGTC 1 cut(s) 2
MmeI TCCRAC 2 cut(s) 135, 192
Mox20I TGGCCA 1 cut(s) 966
Mph1103I ATGCAT 1 cut(s) 421
MroXI GAANNNNTTC 1 cut(s) 315
MscI TGGCCA 1 cut(s) 966
MseI TTAA 7 cut(s) 429, 459, 468, 474, 486, 785, 804
MslI CAYNNNNRTG 1 cut(s) 245
Msp20I TGGCCA 1 cut(s) 966
MspR9I CCNGG 1 cut(s) 24
MvaI CCWGG 1 cut(s) 24
MwoI GCNNNNNNNGC 1 cut(s) 284
NcoI CCATGG 1 cut(s) 537
NdeII GATC 1 cut(s) 451
NlaIII CATG 8 cut(s) 157, 238, 360, 541, 737, 799, 871, 958
NlaIV GGNNCC 1 cut(s) 768
NmeAIII GCCGAG 1 cut(s) 400
NmuCI GTSAC 1 cut(s) 726
NsiI ATGCAT 1 cut(s) 421
NspI RCATGY 3 cut(s) 360, 737, 799
OliI CACNNNNGTG 1 cut(s) 245
PceI AGGCCT 1 cut(s) 511
PciI ACATGT 2 cut(s) 356, 733
PdmI GAANNNNTTC 1 cut(s) 315
PkrI GCNGC 3 cut(s) 124, 289, 949
PleI GAGTC 1 cut(s) 2
PpsI GAGTC 1 cut(s) 2
PscI ACATGT 2 cut(s) 356, 733
Psp6I CCWGG 1 cut(s) 22
PspGI CCWGG 1 cut(s) 22
PspN4I GGNNCC 1 cut(s) 768
PspPI GGNCC 1 cut(s) 26
PsrI GAACNNNNNNTAC 2 cut(s) 484, 516
PstI CTGCAG 2 cut(s) 127, 292
RseI CAYNNNNRTG 1 cut(s) 245
SaqAI TTAA 7 cut(s) 429, 459, 468, 474, 486, 785, 804
SatI GCNGC 3 cut(s) 123, 288, 948
Sau3AI GATC 1 cut(s) 451
Sau96I GGNCC 1 cut(s) 26
SchI GAGTC 1 cut(s) 2
ScrFI CCNGG 1 cut(s) 24
SfaNI GCATC 2 cut(s) 428, 611
SfcI CTRYAG 2 cut(s) 123, 288
SinI GGWCC 1 cut(s) 26
SmiMI CAYNNNNRTG 1 cut(s) 245
Sse9I AATT 6 cut(s) 169, 186, 772, 815, 995, 1009
SseBI AGGCCT 1 cut(s) 511
SspMI CTAG 3 cut(s) 507, 524, 981
StuI AGGCCT 1 cut(s) 511
StyD4I CCNGG 1 cut(s) 22
StyI CCWWGG 1 cut(s) 537
TaiI ACGT 2 cut(s) 17, 205
TaqI TCGA 1 cut(s) 205
TasI AATT 6 cut(s) 169, 186, 772, 815, 995, 1009
Tru1I TTAA 7 cut(s) 429, 459, 468, 474, 486, 785, 804
Tru9I TTAA 7 cut(s) 429, 459, 468, 474, 486, 785, 804
TscAI CASTG 1 cut(s) 856
TseFI GTSAC 1 cut(s) 726
TseI GCWGC 3 cut(s) 122, 287, 947
Tsp45I GTSAC 1 cut(s) 726
TspDTI ATGAA 7 cut(s) 198, 251, 270, 324, 570, 587, 908
TspRI CASTG 1 cut(s) 856
VpaK11BI GGWCC 1 cut(s) 26
XapI RAATTY 1 cut(s) 186
XbaI TCTAGA 1 cut(s) 523
XceI RCATGY 3 cut(s) 360, 737, 799
XmnI GAANNNNTTC 1 cut(s) 315
XspI CTAG 3 cut(s) 507, 524, 981
Zsp2I ATGCAT 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.