Rmu_sc0015522.1_g000003

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015522.1
OG0000325
Physical Location & Seq
Reverse (-)
4204 .. 6036
1833 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015522.1_g000003.1.cds

Sequence Viewer

Length: 1833 bp
atgaagcatttgcttaaggtcaatagaagtatatctgaggcacaaaaagcacatgcagatgatgctgaacattctggtttctccatcaaagcaactgtggagttgatgagtagagaagtaggagggccagagaaccttggattttcacagaaggactacatgaattacatacatagaaagcgaatgtctaaaatggaaaagggagatgcaggtgctgtattgcagtactttcaaaagatgcaatctgagaattcgtcatacttttattcaatccaacttgatgaggatgacatgatcacaaacatattttgggctgatgctcgatctgtaagtgattatagtctgtttggagatgtgctttgttttgatacgacatacaggacaaatgaatatggtcgaccctttgcaccgtttgttggggttaatcatcataagcaaacaacattgtttggtgcagctttgttatatgatgaaacaaccgtatcttttatctggttatttgagacattcctctctgctatgtctggtaagcacctaatgaccattcttactgatcagtctgctgccatggctagagcaataaaagaagtttttccacaagctactcatcgcttatgtgtgtggcatctttatcgaaatgctgctaagaatctcagtcatgtctttcatggatcttcagaatttgttgatgattttagcaattgcatgtatgactatgagtttgagcatgagtggctattagcatggaatggacttcttgagaaatatggcctcaaggaaaacaagtggttgaatcatttatttgaattgcgggaaaaatgggcactagtgtatgggagacatactttcactgccgatatgaaaagcacacagcgaagtgaatgcatgaataatgtgcttaagaaatatttgaagccagagcataatcttttgcggtttttcgaacattatgaaagagttttggctgatcgaagatatcaagagttgattgctgaatataagatgatacaaacaactcctatcttggcagtaagtgcacatatgctgcaacatggagcagaggtctatactccagaggtattcttgctgtttcagaaagaatttgtgagaattcataattatagtacttacaaggttggtaagtctgggatgacatcagagtatatagtatcatatagttctgaacataatgagcacttggtcaaatatgaagcttcaacacaaaatgttaattgtagttgtaaaaagttcacgtttgttgggattttgtgtgctcatgcactaaaagtgcttgacaagaagaatgtgaagaaaattccaccgcaatacattttaaagcgatggacaagagaagcaaaaattatgagtattactagttatcatcctactgagattcacggtaatcctaaggagtcgattggcagaaggtatggctacttgtgccgcacttctcgtgatattttaactgttgcagcagatgatgaagagttgacgagatatgcacatgaatgtttggttgagatgatcaaaggcttagagttaataaagaaaaatcgcactgagaaagaggggagaagttctagtgatagcagcgaagtgaatactacttttggtcaaagtgaagaggttgagggaatagttcaatctaatgcttgtgaaacaacaattgtctgtggagttaaaagaaaagctacaattggccgtccacgtaccagattcaaagacccggctgaaaaaaagagagtaaagtaccaaagaaaagcacaaaagctcccacaagaaggaaaatacccatgcaggtacaattctaatccttctattacgaataagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

610

Amino Acids

70.76

Weight (kDa)

8.77

Isoelectric Point (pI)

42.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 200
Acc36I ACCTGC 2 cut(s) 200, 1788
AccI GTMKAC 1 cut(s) 397
AciI CCGC 4 cut(s) 811, 934, 1322, 1444
AclWI GGATC 1 cut(s) 679
AcoI YGGCCR 1 cut(s) 1699
AcsI RAATTY 5 cut(s) 250, 680, 1100, 1110, 1314
AcuI CTGAAG 1 cut(s) 660
AfaI GTAC 5 cut(s) 227, 1126, 1711, 1751, 1802
AfiI CCNNNNNNNGG 2 cut(s) 416, 1781
AflII CTTAAG 2 cut(s) 14, 899
AgsI TTSAA 8 cut(s) 233, 270, 793, 806, 913, 1218, 1643, 1720
AhlI ACTAGT 2 cut(s) 826, 1373
AluBI AGCT 5 cut(s) 458, 602, 1214, 1691, 1771
AluI AGCT 5 cut(s) 458, 602, 1214, 1691, 1771
Alw21I GWGCWC 3 cut(s) 1039, 1197, 1276
Alw26I GTCTC 2 cut(s) 497, 832
Alw44I GTGCAC 1 cut(s) 1035
AlwI GGATC 1 cut(s) 679
AlwNI CAGNNNCTG 1 cut(s) 215
AoxI GGCC 3 cut(s) 125, 769, 1699
ApaLI GTGCAC 1 cut(s) 1035
ApeKI GCWGC 6 cut(s) 455, 563, 641, 1045, 1472, 1590
ApoI RAATTY 5 cut(s) 250, 680, 1100, 1110, 1314
ArsI GACNNNNNNTTYG 2 cut(s) 704, 736
Asp700I GAANNNNTTC 1 cut(s) 591
AspS9I GGNCC 1 cut(s) 125
AsuC2I CCSGG 1 cut(s) 1727
AsuII TTCGAA 1 cut(s) 942
AxyI CCTNAGG 1 cut(s) 1407
BaeGI GKGCMC 2 cut(s) 826, 1039
BaeI ACNNNNGTAYC 2 cut(s) 465, 498
BauI CACGAG 1 cut(s) 1452
Bbv12I GWGCWC 3 cut(s) 1039, 1197, 1276
BbvI GCAGC 6 cut(s) 467, 550, 628, 1032, 1484, 1602
BccI CCATC 2 cut(s) 92, 1335
BceAI ACGGC 1 cut(s) 1686
BcgI CGANNNNNNTGC 4 cut(s) 614, 648, 864, 898
BclI TGATCA 3 cut(s) 294, 553, 1524
BcnI CCSGG 1 cut(s) 1727
BcoDI GTCTC 2 cut(s) 497, 832
BcuI ACTAGT 2 cut(s) 826, 1373
BfaI CTAG 4 cut(s) 573, 827, 1374, 1581
BfrI CTTAAG 2 cut(s) 14, 899
BfuAI ACCTGC 2 cut(s) 200, 1788
BisI GCNGC 7 cut(s) 456, 564, 642, 1046, 1444, 1473, 1591
BlsI GCNGC 7 cut(s) 457, 565, 643, 1047, 1445, 1474, 1592
BmcAI AGTACT 2 cut(s) 227, 1126
Bme1390I CCNGG 1 cut(s) 1727
BmgT120I GGNCC 1 cut(s) 125
BmrFI CCNGG 1 cut(s) 1727
BmsI GCATC 5 cut(s) 52, 196, 228, 307, 634
BpmI CTGGAG 1 cut(s) 1056
Bpu14I TTCGAA 1 cut(s) 942
BpuEI CTTGAG 2 cut(s) 758, 779
BpuMI CCSGG 1 cut(s) 1727
BsaAI YACGTR 1 cut(s) 1709
BsaJI CCNNGG 2 cut(s) 136, 567
BsaXI ACNNNNNCTCC 4 cut(s) 1047, 1077, 1755, 1785
Bsc4I CCNNNNNNNGG 2 cut(s) 416, 1781
Bse21I CCTNAGG 1 cut(s) 1407
BseDI CCNNGG 2 cut(s) 136, 567
BseGI GGATG 3 cut(s) 292, 1155, 1381
BseLI CCNNNNNNNGG 2 cut(s) 416, 1781
BseMII CTCAG 5 cut(s) 27, 237, 667, 1380, 1551
BseSI GKGCMC 2 cut(s) 826, 1039
BseXI GCAGC 6 cut(s) 467, 550, 628, 1032, 1484, 1602
BsgI GTGCAG 1 cut(s) 474
BshFI GGCC 3 cut(s) 127, 771, 1701
BsiHKAI GWGCWC 3 cut(s) 1039, 1197, 1276
BsiSI CCGG 1 cut(s) 1727
BslI CCNNNNNNNGG 2 cut(s) 416, 1781
BsmAI GTCTC 2 cut(s) 497, 832
BsmI GAATGC 1 cut(s) 887
BsnI GGCC 3 cut(s) 127, 771, 1701
Bsp119I TTCGAA 1 cut(s) 942
Bsp1286I GDGCHC 4 cut(s) 826, 1039, 1197, 1276
Bsp143I GATC 6 cut(s) 294, 323, 553, 671, 967, 1524
Bsp19I CCATGG 1 cut(s) 567
BspACI CCGC 4 cut(s) 811, 934, 1322, 1444
BspANI GGCC 3 cut(s) 127, 771, 1701
BspCNI CTCAG 5 cut(s) 28, 238, 666, 1381, 1552
BspMI ACCTGC 2 cut(s) 200, 1788
BspPI GGATC 1 cut(s) 679
BspT104I TTCGAA 1 cut(s) 942
BspTI CTTAAG 2 cut(s) 14, 899
BssECI CCNNGG 2 cut(s) 136, 567
BssMI GATC 6 cut(s) 294, 323, 553, 671, 967, 1524
BssSI CACGAG 1 cut(s) 1452
BssT1I CCWWGG 2 cut(s) 136, 567
Bst2BI CACGAG 1 cut(s) 1452
Bst4CI ACNGT 5 cut(s) 97, 411, 481, 1400, 1468
Bst6I CTCTTC 2 cut(s) 1479, 1617
BstAFI CTTAAG 2 cut(s) 14, 899
BstAPI GCANNNNNTGC 2 cut(s) 62, 1034
BstBAI YACGTR 1 cut(s) 1709
BstBI TTCGAA 1 cut(s) 942
BstDEI CTNAG 8 cut(s) 36, 246, 645, 653, 1389, 1407, 1534, 1560
BstDSI CCRYGG 1 cut(s) 567
BstF5I GGATG 3 cut(s) 292, 1155, 1381
BstKTI GATC 6 cut(s) 297, 326, 556, 674, 970, 1527
BstMAI GTCTC 2 cut(s) 497, 832
BstMBI GATC 6 cut(s) 294, 323, 553, 671, 967, 1524
BstMWI GCNNNNNNNGC 6 cut(s) 47, 62, 569, 733, 1034, 1440
BstNSI RCATGY 2 cut(s) 56, 709
BstSCI CCNGG 1 cut(s) 1725
BstSLI GKGCMC 2 cut(s) 826, 1039
BstV1I GCAGC 6 cut(s) 467, 550, 628, 1032, 1484, 1602
BstX2I RGATCY 1 cut(s) 671
BstYI RGATCY 1 cut(s) 671
Bsu36I CCTNAGG 1 cut(s) 1407
BsuRI GGCC 3 cut(s) 127, 771, 1701
BtgI CCRYGG 1 cut(s) 567
BtgZI GCGATG 2 cut(s) 593, 1354
BtsCI GGATG 3 cut(s) 292, 1155, 1381
BtsI GCAGTG 1 cut(s) 849
BtsIMutI CAGTG 2 cut(s) 849, 1557
BveI ACCTGC 2 cut(s) 200, 1788
CaiI CAGNNNCTG 1 cut(s) 215
Cfr13I GGNCC 1 cut(s) 125
Csp6I GTAC 5 cut(s) 226, 1125, 1710, 1750, 1801
CviQI GTAC 5 cut(s) 226, 1125, 1710, 1750, 1801
DdeI CTNAG 8 cut(s) 36, 246, 645, 653, 1389, 1407, 1534, 1560
DpnI GATC 6 cut(s) 296, 325, 555, 673, 969, 1526
DpnII GATC 6 cut(s) 294, 323, 553, 671, 967, 1524
DraI TTTAAA 1 cut(s) 1335
EaeI YGGCCR 1 cut(s) 1699
Eam1104I CTCTTC 2 cut(s) 1479, 1617
EarI CTCTTC 2 cut(s) 1479, 1617
Eco130I CCWWGG 2 cut(s) 136, 567
Eco32I GATATC 1 cut(s) 977
Eco57I CTGAAG 1 cut(s) 660
Eco81I CCTNAGG 1 cut(s) 1407
EcoRI GAATTC 2 cut(s) 250, 1110
EcoRV GATATC 1 cut(s) 977
EcoT14I CCWWGG 2 cut(s) 136, 567
EcoT22I ATGCAT 1 cut(s) 887
ErhI CCWWGG 2 cut(s) 136, 567
FauI CCCGC 1 cut(s) 804
FauNDI CATATG 1 cut(s) 1041
FbaI TGATCA 3 cut(s) 294, 553, 1524
FblI GTMKAC 1 cut(s) 397
Fnu4HI GCNGC 7 cut(s) 456, 564, 642, 1046, 1444, 1473, 1591
FokI GGATG 3 cut(s) 299, 1162, 1368
Fsp4HI GCNGC 7 cut(s) 456, 564, 642, 1046, 1444, 1473, 1591
FspBI CTAG 4 cut(s) 573, 827, 1374, 1581
GluI GCNGC 7 cut(s) 456, 564, 642, 1046, 1444, 1473, 1591
GsuI CTGGAG 1 cut(s) 1056
HaeIII GGCC 3 cut(s) 127, 771, 1701
HapII CCGG 1 cut(s) 1727
HincII GTYRAC 2 cut(s) 398, 1491
HindII GTYRAC 2 cut(s) 398, 1491
HindIII AAGCTT 1 cut(s) 1212
HinfI GANTC 5 cut(s) 649, 793, 1393, 1412, 1716
HpaII CCGG 1 cut(s) 1727
Hpy166II GTNNAC 5 cut(s) 398, 1037, 1251, 1491, 1706
Hpy188I TCNGA 6 cut(s) 37, 247, 679, 1095, 1159, 1183
Hpy188III TCNNGA 4 cut(s) 758, 980, 1073, 1454
Hpy8I GTNNAC 5 cut(s) 398, 1037, 1251, 1491, 1706
HpyAV CCTTC 4 cut(s) 145, 1419, 1775, 1824
HpyCH4III ACNGT 5 cut(s) 97, 411, 481, 1400, 1468
HpyCH4IV ACGT 2 cut(s) 1253, 1708
HpyF10VI GCNNNNNNNGC 6 cut(s) 47, 62, 569, 733, 1034, 1440
HpyF3I CTNAG 8 cut(s) 36, 246, 645, 653, 1389, 1407, 1534, 1560
HpySE526I ACGT 2 cut(s) 1253, 1708
Ksp22I TGATCA 3 cut(s) 294, 553, 1524
Kzo9I GATC 6 cut(s) 294, 323, 553, 671, 967, 1524
LmnI GCTCC 2 cut(s) 1055, 1776
Lsp1109I GCAGC 6 cut(s) 467, 550, 628, 1032, 1484, 1602
LweI GCATC 5 cut(s) 52, 196, 228, 307, 634
MaeI CTAG 4 cut(s) 573, 827, 1374, 1581
MaeII ACGT 2 cut(s) 1253, 1708
MalI GATC 6 cut(s) 296, 325, 555, 673, 969, 1526
MboI GATC 6 cut(s) 294, 323, 553, 671, 967, 1524
MboII GAAGA 6 cut(s) 666, 984, 1312, 1321, 1496, 1634
MfeI CAATTG 3 cut(s) 700, 1665, 1695
MflI RGATCY 1 cut(s) 671
MhlI GDGCHC 4 cut(s) 826, 1039, 1197, 1276
MlyI GAGTC 1 cut(s) 1421
MmeI TCCRAC 1 cut(s) 298
Mph1103I ATGCAT 1 cut(s) 887
MroXI GAANNNNTTC 1 cut(s) 591
MseI TTAA 8 cut(s) 15, 423, 900, 1230, 1334, 1463, 1541, 1680
MslI CAYNNNNRTG 2 cut(s) 57, 1507
MspCI CTTAAG 2 cut(s) 14, 899
MspI CCGG 1 cut(s) 1727
MspR9I CCNGG 1 cut(s) 1727
MunI CAATTG 3 cut(s) 700, 1665, 1695
Mva1269I GAATGC 1 cut(s) 887
MwoI GCNNNNNNNGC 6 cut(s) 47, 62, 569, 733, 1034, 1440
NciI CCSGG 1 cut(s) 1727
NcoI CCATGG 1 cut(s) 567
NdeI CATATG 1 cut(s) 1041
NdeII GATC 6 cut(s) 294, 323, 553, 671, 967, 1524
NsiI ATGCAT 1 cut(s) 887
NspI RCATGY 2 cut(s) 56, 709
NspV TTCGAA 1 cut(s) 942
PaqCI CACCTGC 1 cut(s) 200
PctI GAATGC 1 cut(s) 887
PdmI GAANNNNTTC 1 cut(s) 591
PfeI GAWTC 4 cut(s) 649, 793, 1393, 1716
PkrI GCNGC 7 cut(s) 457, 565, 643, 1047, 1445, 1474, 1592
PleI GAGTC 1 cut(s) 1420
PpsI GAGTC 1 cut(s) 1420
Ppu21I YACGTR 1 cut(s) 1709
PspPI GGNCC 1 cut(s) 125
PstNI CAGNNNCTG 1 cut(s) 215
PsuI RGATCY 1 cut(s) 671
RsaI GTAC 5 cut(s) 227, 1126, 1711, 1751, 1802
RsaNI GTAC 5 cut(s) 226, 1125, 1710, 1750, 1801
RseI CAYNNNNRTG 2 cut(s) 57, 1507
SalI GTCGAC 1 cut(s) 396
SaqAI TTAA 8 cut(s) 15, 423, 900, 1230, 1334, 1463, 1541, 1680
SatI GCNGC 7 cut(s) 456, 564, 642, 1046, 1444, 1473, 1591
Sau3AI GATC 6 cut(s) 294, 323, 553, 671, 967, 1524
Sau96I GGNCC 1 cut(s) 125
ScaI AGTACT 2 cut(s) 227, 1126
SchI GAGTC 1 cut(s) 1421
ScrFI CCNGG 1 cut(s) 1727
SduI GDGCHC 4 cut(s) 826, 1039, 1197, 1276
SfaNI GCATC 5 cut(s) 52, 196, 228, 307, 634
SfuI TTCGAA 1 cut(s) 942
SmiMI CAYNNNNRTG 2 cut(s) 57, 1507
SmlI CTYRAG 4 cut(s) 14, 758, 773, 899
SmoI CTYRAG 4 cut(s) 14, 758, 773, 899
SpeI ACTAGT 2 cut(s) 826, 1373
SsiI CCGC 4 cut(s) 811, 934, 1322, 1444
SspI AATATT 1 cut(s) 908
SspMI CTAG 4 cut(s) 573, 827, 1374, 1581
StyD4I CCNGG 1 cut(s) 1725
StyI CCWWGG 2 cut(s) 136, 567
TaaI ACNGT 5 cut(s) 97, 411, 481, 1400, 1468
TaiI ACGT 2 cut(s) 1256, 1711
TaqI TCGA 6 cut(s) 322, 397, 634, 942, 970, 1415
TatI WGTACW 2 cut(s) 225, 1124
TauI GCSGC 1 cut(s) 1446
TfiI GAWTC 4 cut(s) 649, 793, 1393, 1716
Tru1I TTAA 8 cut(s) 15, 423, 900, 1230, 1334, 1463, 1541, 1680
Tru9I TTAA 8 cut(s) 15, 423, 900, 1230, 1334, 1463, 1541, 1680
TscAI CASTG 2 cut(s) 856, 1564
TseI GCWGC 6 cut(s) 455, 563, 641, 1045, 1472, 1590
TspRI CASTG 2 cut(s) 856, 1564
Vha464I CTTAAG 2 cut(s) 14, 899
VneI GTGCAC 1 cut(s) 1035
XapI RAATTY 5 cut(s) 250, 680, 1100, 1110, 1314
XceI RCATGY 2 cut(s) 56, 709
XmiI GTMKAC 1 cut(s) 397
XmnI GAANNNNTTC 1 cut(s) 591
XspI CTAG 4 cut(s) 573, 827, 1374, 1581
ZrmI AGTACT 2 cut(s) 227, 1126
Zsp2I ATGCAT 1 cut(s) 887
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.