Rh1BG145400

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000325
Physical Location & Seq
Reverse (-)
24037180 .. 24041773
4594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG145400.1

Sequence Viewer

Length: 939 bp
ATGATGCAAACCTCTCCTGTGTTATCTGCTAACGTAGAGATGTTGCAACATGCAGAGGAGGTGTATACCCCAGAAGCTTTTAGACTCTTCCAGCAACAATACACAAGTATTGGTGATTATGTTGCTAATAAAGTTAGCAAGTCTGAGATGAAATATGAATACAAAGTATCTTATCGTGGTTTTACTCGAGAGCATTTGGTAAAATTTGATGCTTCAGAGCAAACAATAACTTGTAGTTGCATGAAGTTTAATTTTGTTGGGATTTTATGCCGTCATGCATTGAAAGTGTTGGATAGGAAGAACGTGAGAAGAATCCCTCCTACTTGCCTATTAAATCGATGGAGTAAAGAAGCTAAGGCAAGAAGCATCACTTGTTATCATGGACCAAACACTAATGAAAATCTCAAGCAGTCGATTGGAAAGCGGTATAGCCATTTGTGTCGTAATTATCGTGAGATTGCATCCTTTGCCGCAGAACATGAGGAATTAACAAAGTATGCAGATGAATATGCCATCGAGTTGCTTAAAAATTTGGAAGAAAAGAAGAAGAAACTTTTGAAAGAAGATGCATGGGTGATTCAAACTTCAGATGTTGGAGCTTTGGAAGGTGAAGTATCAAATGCACGTGGAGTTAAAAGAAAAGCTACTGTTGGACGACCACGCGGTCGTCATGGTAGATTTAAAGGTGTTCTTGAAGGGAAAAATTGTACCATCTACCTCCCAAACATGGGGAATGGCGAATCTACGTATGATGATTCCCATGATAATTTATCGACGTATGATCATTCTCATGATAGTTTCCCACCTGAACCACCTTCCTATGCAGGCACTTCGATGGACTCTAGTTCTAAACAAAAGCTACCATCTACAAGTATAGGCGACAATTTCAACTCTTTGGATCAGGTTTCAACCACTAGCATTGCATTTCTTATTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

312

Amino Acids

35.42

Weight (kDa)

8.53

Isoelectric Point (pI)

39.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 73 - 100 6e-06 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 663
AccI GTMKAC 1 cut(s) 65
AccII CGCG 1 cut(s) 663
AciI CCGC 3 cut(s) 424, 471, 663
AclWI GGATC 1 cut(s) 906
AcsI RAATTY 2 cut(s) 203, 529
AcuI CTGAAG 2 cut(s) 198, 570
AcvI CACGTG 1 cut(s) 626
AfaI GTAC 1 cut(s) 709
AfiI CCNNNNNNNGG 2 cut(s) 727, 728
AgsI TTSAA 6 cut(s) 283, 559, 581, 695, 889, 909
AluBI AGCT 5 cut(s) 77, 353, 599, 644, 859
AluI AGCT 5 cut(s) 77, 353, 599, 644, 859
AlwI GGATC 1 cut(s) 906
Ama87I CYCGRG 1 cut(s) 186
ApoI RAATTY 2 cut(s) 203, 529
AspS9I GGNCC 1 cut(s) 383
AsuHPI GGTGA 3 cut(s) 125, 586, 620
AvaI CYCGRG 1 cut(s) 186
AvaII GGWCC 1 cut(s) 383
BbrPI CACGTG 1 cut(s) 626
BccI CCATC 5 cut(s) 333, 521, 719, 829, 871
BceAI ACGGC 1 cut(s) 255
BcgI CGANNNNNNTGC 2 cut(s) 813, 847
BclI TGATCA 1 cut(s) 781
BfaI CTAG 2 cut(s) 843, 915
BisI GCNGC 1 cut(s) 471
BlsI GCNGC 1 cut(s) 472
Bme18I GGWCC 1 cut(s) 383
BmeT110I CYCGRG 1 cut(s) 186
BmgT120I GGNCC 1 cut(s) 383
BmsI GCATC 4 cut(s) 199, 375, 470, 556
Bpu10I CCTNAGC 1 cut(s) 354
BpuEI CTTGAG 1 cut(s) 389
Bsa29I ATCGAT 1 cut(s) 337
BsaAI YACGTR 2 cut(s) 626, 747
Bsc4I CCNNNNNNNGG 2 cut(s) 727, 728
Bse3DI GCAATG 1 cut(s) 918
BseCI ATCGAT 1 cut(s) 337
BseGI GGATG 1 cut(s) 461
BseLI CCNNNNNNNGG 2 cut(s) 727, 728
BseMI GCAATG 1 cut(s) 918
BseMII CTCAG 1 cut(s) 135
BseRI GAGGAG 1 cut(s) 71
Bsh1236I CGCG 1 cut(s) 663
Bsh1285I CGRYCG 1 cut(s) 667
BshVI ATCGAT 1 cut(s) 337
BsiEI CGRYCG 1 cut(s) 667
BsiHKCI CYCGRG 1 cut(s) 186
BslI CCNNNNNNNGG 2 cut(s) 727, 728
BsoBI CYCGRG 1 cut(s) 186
Bsp143I GATC 2 cut(s) 781, 898
BspACI CCGC 3 cut(s) 424, 471, 663
BspCNI CTCAG 1 cut(s) 136
BspDI ATCGAT 1 cut(s) 337
BspFNI CGCG 1 cut(s) 663
BspHI TCATGA 1 cut(s) 790
BspPI GGATC 1 cut(s) 906
BsrDI GCAATG 1 cut(s) 918
BssMI GATC 2 cut(s) 781, 898
BssNAI GTATAC 1 cut(s) 66
Bst1107I GTATAC 1 cut(s) 66
Bst4CI ACNGT 1 cut(s) 649
Bst6I CTCTTC 1 cut(s) 92
BstAPI GCANNNNNTGC 1 cut(s) 467
BstBAI YACGTR 2 cut(s) 626, 747
BstC8I GCNNGC 1 cut(s) 826
BstDEI CTNAG 2 cut(s) 144, 354
BstF5I GGATG 1 cut(s) 461
BstFNI CGCG 1 cut(s) 663
BstKTI GATC 2 cut(s) 784, 901
BstMBI GATC 2 cut(s) 781, 898
BstMCI CGRYCG 1 cut(s) 667
BstMWI GCNNNNNNNGC 1 cut(s) 467
BstNSI RCATGY 1 cut(s) 53
BstSNI TACGTA 1 cut(s) 747
BstUI CGCG 1 cut(s) 663
BstZ17I GTATAC 1 cut(s) 66
Bsu15I ATCGAT 1 cut(s) 337
BsuTUI ATCGAT 1 cut(s) 337
BtsCI GGATG 1 cut(s) 461
Cac8I GCNNGC 1 cut(s) 826
CciI TCATGA 1 cut(s) 790
Cfr13I GGNCC 1 cut(s) 383
ClaI ATCGAT 1 cut(s) 337
Csp6I GTAC 1 cut(s) 708
CspCI CAANNNNNGTGG 2 cut(s) 901, 936
CviJI RGCY 6 cut(s) 77, 353, 432, 599, 644, 859
CviKI_1 RGCY 6 cut(s) 77, 353, 432, 599, 644, 859
CviQI GTAC 1 cut(s) 708
DdeI CTNAG 2 cut(s) 144, 354
DpnI GATC 2 cut(s) 783, 900
DpnII GATC 2 cut(s) 781, 898
DraI TTTAAA 1 cut(s) 682
DrdI GACNNNNNNGTC 1 cut(s) 663
DseDI GACNNNNNNGTC 1 cut(s) 663
Eam1104I CTCTTC 1 cut(s) 92
EarI CTCTTC 1 cut(s) 92
Eco105I TACGTA 1 cut(s) 747
Eco47I GGWCC 1 cut(s) 383
Eco57I CTGAAG 2 cut(s) 198, 570
Eco72I CACGTG 1 cut(s) 626
Eco88I CYCGRG 1 cut(s) 186
EcoT22I ATGCAT 2 cut(s) 280, 571
FalI AAGNNNNNCTT 4 cut(s) 355, 387, 675, 707
FbaI TGATCA 1 cut(s) 781
FblI GTMKAC 1 cut(s) 65
Fnu4HI GCNGC 1 cut(s) 471
FokI GGATG 1 cut(s) 448
Fsp4HI GCNGC 1 cut(s) 471
FspBI CTAG 2 cut(s) 843, 915
GluI GCNGC 1 cut(s) 471
HindIII AAGCTT 1 cut(s) 75
HinfI GANTC 6 cut(s) 84, 312, 577, 740, 755, 839
HphI GGTGA 3 cut(s) 125, 586, 620
Hpy166II GTNNAC 1 cut(s) 66
Hpy188I TCNGA 3 cut(s) 145, 217, 589
Hpy188III TCNNGA 4 cut(s) 188, 452, 692, 791
Hpy8I GTNNAC 1 cut(s) 66
Hpy99I CGWCG 1 cut(s) 778
HpyAV CCTTC 3 cut(s) 599, 689, 825
HpyCH4III ACNGT 1 cut(s) 649
HpyCH4IV ACGT 5 cut(s) 33, 303, 625, 746, 776
HpyF10VI GCNNNNNNNGC 1 cut(s) 467
HpyF3I CTNAG 2 cut(s) 144, 354
HpySE526I ACGT 5 cut(s) 33, 303, 625, 746, 776
Ksp22I TGATCA 1 cut(s) 781
Kzo9I GATC 2 cut(s) 781, 898
LmnI GCTCC 1 cut(s) 596
LpnPI CCDG 6 cut(s) 30, 84, 104, 810, 819, 887
LweI GCATC 4 cut(s) 199, 375, 470, 556
MaeI CTAG 2 cut(s) 843, 915
MaeII ACGT 5 cut(s) 33, 303, 625, 746, 776
MalI GATC 2 cut(s) 783, 900
MboI GATC 2 cut(s) 781, 898
MboII GAAGA 7 cut(s) 79, 310, 321, 548, 556, 559, 575
MluCI AATT 8 cut(s) 203, 250, 445, 485, 529, 703, 766, 883
MlyI GAGTC 2 cut(s) 78, 833
MmeI TCCRAC 3 cut(s) 270, 574, 631
MnlI CCTC 6 cut(s) 22, 49, 52, 327, 475, 728
Mph1103I ATGCAT 2 cut(s) 280, 571
MseI TTAA 6 cut(s) 249, 332, 488, 525, 633, 681
MslI CAYNNNNRTG 2 cut(s) 789, 833
MvnI CGCG 1 cut(s) 663
MwoI GCNNNNNNNGC 1 cut(s) 467
NdeII GATC 2 cut(s) 781, 898
NsiI ATGCAT 2 cut(s) 280, 571
NspI RCATGY 1 cut(s) 53
PaeR7I CTCGAG 1 cut(s) 186
PagI TCATGA 1 cut(s) 790
PcsI WCGNNNNNNNCGW 1 cut(s) 448
PfeI GAWTC 4 cut(s) 312, 577, 740, 755
PkrI GCNGC 1 cut(s) 472
PleI GAGTC 2 cut(s) 78, 833
PmaCI CACGTG 1 cut(s) 626
PmlI CACGTG 1 cut(s) 626
PpsI GAGTC 2 cut(s) 78, 833
Ppu21I YACGTR 2 cut(s) 626, 747
PspCI CACGTG 1 cut(s) 626
PspPI GGNCC 1 cut(s) 383
RsaI GTAC 1 cut(s) 709
RsaNI GTAC 1 cut(s) 708
RseI CAYNNNNRTG 2 cut(s) 789, 833
SaqAI TTAA 6 cut(s) 249, 332, 488, 525, 633, 681
SatI GCNGC 1 cut(s) 471
Sau3AI GATC 2 cut(s) 781, 898
Sau96I GGNCC 1 cut(s) 383
SchI GAGTC 2 cut(s) 78, 833
SfaNI GCATC 4 cut(s) 199, 375, 470, 556
Sfr274I CTCGAG 1 cut(s) 186
SinI GGWCC 1 cut(s) 383
SlaI CTCGAG 1 cut(s) 186
SmiMI CAYNNNNRTG 2 cut(s) 789, 833
SmlI CTYRAG 2 cut(s) 186, 404
SmoI CTYRAG 2 cut(s) 186, 404
SnaBI TACGTA 1 cut(s) 747
Sse9I AATT 8 cut(s) 203, 250, 445, 485, 529, 703, 766, 883
SsiI CCGC 3 cut(s) 424, 471, 663
SspMI CTAG 2 cut(s) 843, 915
TaaI ACNGT 1 cut(s) 649
TaiI ACGT 5 cut(s) 36, 306, 628, 749, 779
TaqI TCGA 6 cut(s) 187, 337, 413, 516, 773, 833
TasI AATT 8 cut(s) 203, 250, 445, 485, 529, 703, 766, 883
TauI GCSGC 1 cut(s) 473
TfiI GAWTC 4 cut(s) 312, 577, 740, 755
Tru1I TTAA 6 cut(s) 249, 332, 488, 525, 633, 681
Tru9I TTAA 6 cut(s) 249, 332, 488, 525, 633, 681
TspDTI ATGAA 5 cut(s) 164, 171, 257, 411, 519
VpaK11BI GGWCC 1 cut(s) 383
XapI RAATTY 2 cut(s) 203, 529
XceI RCATGY 1 cut(s) 53
XhoI CTCGAG 1 cut(s) 186
XmiI GTMKAC 1 cut(s) 65
XspI CTAG 2 cut(s) 843, 915
Zsp2I ATGCAT 2 cut(s) 280, 571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.