RLG00000026567

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000325
Physical Location & Seq
Reverse (-)
3877160 .. 3878043
884 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026567

Sequence Viewer

Length: 612 bp
ATGTTGTCTACCAGGGCTTCTGAATCTGGGGAAGCATTTCAATACGCTGCTAGACAACTCGACCAAGTGATGGAAGGGGTTGAGAAAATTTTGACATTAAAACCTGAGGATGCTCAAGCTGTCACGTCAAGCAGCACAGGAACAACTACTTCTGATAATGAGCATGCAGAAACTTTTCTTGATGAGAATGCTTTTGAGAATCAGGGTGAGAATGGAGTAAAAGGAGCAAACGAACAAGGGAGTGCTGTCCTCGACAGAGGTGAATTAATGAATGTAAATGGAAACTTCTCTAGCACAAACAGAATTCAGATTTCAGATGCATCCCCGCAAAGTAATCATTCCTACATTTCTTCGGAACCCTTAACCGGAAATCCCATTATACAGGGTTTGTACACTTTTGAAGAGAACCCTGTACATTGCACGTACGCGCAAGATAATGCCATCTTGTTTCAACCTCCAAACATCTTTCCTAACCAACACGATTCACCTTCCCAATTGCAATTGCTTCAGGAACCTCTTATCAATGGCACATACCAAGAACCCATATCTGAACTGAGGCAGGCAATGGATCTCGATCTCCACCCTTCACATTCACCTTCATTTTTGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

204

Amino Acids

22.25

Weight (kDa)

4.31

Isoelectric Point (pI)

47.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 70
AccI GTMKAC 1 cut(s) 8
AccII CGCG 1 cut(s) 428
AciI CCGC 1 cut(s) 326
AclWI GGATC 1 cut(s) 576
AcsI RAATTY 2 cut(s) 87, 303
AcuI CTGAAG 1 cut(s) 491
AfaI GTAC 3 cut(s) 392, 414, 425
AfiI CCNNNNNNNGG 2 cut(s) 70, 365
AgsI TTSAA 3 cut(s) 41, 401, 452
AjiI CACGTC 1 cut(s) 126
AjnI CCWGG 1 cut(s) 11
AluBI AGCT 1 cut(s) 119
AluI AGCT 1 cut(s) 119
AlwI GGATC 1 cut(s) 576
ApeKI GCWGC 2 cut(s) 47, 132
ApoI RAATTY 2 cut(s) 87, 303
AseI ATTAAT 1 cut(s) 266
Asp700I GAANNNNTTC 2 cut(s) 36, 174
AspLEI GCGC 1 cut(s) 430
AsuHPI GGTGA 4 cut(s) 218, 272, 477, 585
AxyI CCTNAGG 1 cut(s) 105
BbvI GCAGC 2 cut(s) 34, 144
BccI CCATC 2 cut(s) 64, 449
BciT130I CCWGG 1 cut(s) 13
BfaI CTAG 2 cut(s) 51, 291
BisI GCNGC 2 cut(s) 48, 133
BlsI GCNGC 2 cut(s) 49, 134
Bme1390I CCNGG 1 cut(s) 13
BmgBI CACGTC 1 cut(s) 126
BmiI GGNNCC 2 cut(s) 357, 513
BmrFI CCNGG 1 cut(s) 13
BmsI GCATC 3 cut(s) 100, 307, 329
BpuEI CTTGAG 1 cut(s) 99
BsaAI YACGTR 1 cut(s) 423
BsaBI GATNNNNATC 1 cut(s) 573
BsaJI CCNNGG 1 cut(s) 12
BsaWI WCCGGW 1 cut(s) 365
Bsc4I CCNNNNNNNGG 2 cut(s) 70, 365
Bse21I CCTNAGG 1 cut(s) 105
Bse3DI GCAATG 2 cut(s) 415, 570
Bse8I GATNNNNATC 1 cut(s) 573
BseBI CCWGG 1 cut(s) 13
BseDI CCNNGG 1 cut(s) 12
BseGI GGATG 2 cut(s) 115, 320
BseJI GATNNNNATC 1 cut(s) 573
BseLI CCNNNNNNNGG 2 cut(s) 70, 365
BseMI GCAATG 2 cut(s) 415, 570
BseMII CTCAG 2 cut(s) 96, 545
BseXI GCAGC 2 cut(s) 34, 144
Bsh1236I CGCG 1 cut(s) 428
BsiSI CCGG 1 cut(s) 366
BsiWI CGTACG 1 cut(s) 423
BslI CCNNNNNNNGG 2 cut(s) 70, 365
BsmI GAATGC 1 cut(s) 193
Bsp1407I TGTACA 2 cut(s) 390, 412
Bsp143I GATC 2 cut(s) 568, 574
BspACI CCGC 1 cut(s) 326
BspCNI CTCAG 2 cut(s) 97, 546
BspFNI CGCG 1 cut(s) 428
BspLI GGNNCC 2 cut(s) 357, 513
BspPI GGATC 1 cut(s) 576
BsrDI GCAATG 2 cut(s) 415, 570
BsrGI TGTACA 2 cut(s) 390, 412
BssECI CCNNGG 1 cut(s) 12
BssMI GATC 2 cut(s) 568, 574
Bst2UI CCWGG 1 cut(s) 13
Bst6I CTCTTC 1 cut(s) 396
BstAUI TGTACA 2 cut(s) 390, 412
BstBAI YACGTR 1 cut(s) 423
BstC8I GCNNGC 2 cut(s) 165, 561
BstDEI CTNAG 2 cut(s) 105, 554
BstF5I GGATG 2 cut(s) 115, 320
BstFNI CGCG 1 cut(s) 428
BstHHI GCGC 1 cut(s) 430
BstKTI GATC 2 cut(s) 571, 577
BstMBI GATC 2 cut(s) 568, 574
BstNI CCWGG 1 cut(s) 13
BstNSI RCATGY 1 cut(s) 167
BstSCI CCNGG 1 cut(s) 11
BstUI CGCG 1 cut(s) 428
BstV1I GCAGC 2 cut(s) 34, 144
BstX2I RGATCY 1 cut(s) 568
BstYI RGATCY 1 cut(s) 568
Bsu36I CCTNAGG 1 cut(s) 105
BtrI CACGTC 1 cut(s) 126
BtsCI GGATG 2 cut(s) 115, 320
Cac8I GCNNGC 2 cut(s) 165, 561
CfoI GCGC 1 cut(s) 430
Csp6I GTAC 3 cut(s) 391, 413, 424
CviAII CATG 1 cut(s) 164
CviJI RGCY 2 cut(s) 17, 119
CviKI_1 RGCY 2 cut(s) 17, 119
CviQI GTAC 3 cut(s) 391, 413, 424
DdeI CTNAG 2 cut(s) 105, 554
DpnI GATC 2 cut(s) 570, 576
DpnII GATC 2 cut(s) 568, 574
Eam1104I CTCTTC 1 cut(s) 396
EarI CTCTTC 1 cut(s) 396
Eco57I CTGAAG 1 cut(s) 491
Eco81I CCTNAGG 1 cut(s) 105
EcoRI GAATTC 1 cut(s) 303
EcoRII CCWGG 1 cut(s) 11
EcoT22I ATGCAT 1 cut(s) 322
FaeI CATG 1 cut(s) 167
FaiI YATR 4 cut(s) 165, 380, 532, 545
FatI CATG 1 cut(s) 163
FauI CCCGC 1 cut(s) 333
FblI GTMKAC 1 cut(s) 8
Fnu4HI GCNGC 2 cut(s) 48, 133
FokI GGATG 2 cut(s) 122, 307
Fsp4HI GCNGC 2 cut(s) 48, 133
FspBI CTAG 2 cut(s) 51, 291
GlaI GCGC 1 cut(s) 429
GluI GCNGC 2 cut(s) 48, 133
HapII CCGG 1 cut(s) 366
HhaI GCGC 1 cut(s) 430
Hin1II CATG 1 cut(s) 167
Hin6I GCGC 1 cut(s) 428
HinP1I GCGC 1 cut(s) 428
HinfI GANTC 3 cut(s) 23, 199, 482
HpaII CCGG 1 cut(s) 366
HphI GGTGA 4 cut(s) 218, 272, 477, 585
Hpy166II GTNNAC 2 cut(s) 9, 393
Hpy188I TCNGA 7 cut(s) 22, 154, 309, 316, 355, 550, 611
Hpy188III TCNNGA 3 cut(s) 179, 509, 572
Hpy8I GTNNAC 2 cut(s) 9, 393
HpyAV CCTTC 4 cut(s) 68, 498, 594, 606
HpyCH4IV ACGT 2 cut(s) 125, 422
HpyCH4V TGCA 4 cut(s) 167, 320, 420, 499
HpyF3I CTNAG 2 cut(s) 105, 554
HpySE526I ACGT 2 cut(s) 125, 422
Hsp92II CATG 1 cut(s) 167
HspAI GCGC 1 cut(s) 428
Kzo9I GATC 2 cut(s) 568, 574
LmnI GCTCC 1 cut(s) 224
Lsp1109I GCAGC 2 cut(s) 34, 144
LweI GCATC 3 cut(s) 100, 307, 329
MaeI CTAG 2 cut(s) 51, 291
MaeII ACGT 2 cut(s) 125, 422
MaeIII GTNAC 1 cut(s) 121
MalI GATC 2 cut(s) 570, 576
MboI GATC 2 cut(s) 568, 574
MboII GAAGA 2 cut(s) 342, 413
MfeI CAATTG 2 cut(s) 494, 500
MflI RGATCY 1 cut(s) 568
MluCI AATT 5 cut(s) 87, 263, 303, 494, 500
MnlI CCTC 6 cut(s) 100, 251, 260, 465, 525, 549
Mph1103I ATGCAT 1 cut(s) 322
MroXI GAANNNNTTC 2 cut(s) 36, 174
MseI TTAA 3 cut(s) 98, 266, 362
MspI CCGG 1 cut(s) 366
MspR9I CCNGG 1 cut(s) 13
MunI CAATTG 2 cut(s) 494, 500
Mva1269I GAATGC 1 cut(s) 193
MvaI CCWGG 1 cut(s) 13
MvnI CGCG 1 cut(s) 428
NdeII GATC 2 cut(s) 568, 574
NlaIII CATG 1 cut(s) 167
NlaIV GGNNCC 2 cut(s) 357, 513
NmuCI GTSAC 1 cut(s) 121
NsiI ATGCAT 1 cut(s) 322
NspI RCATGY 1 cut(s) 167
PaeI GCATGC 1 cut(s) 167
PctI GAATGC 1 cut(s) 193
PdmI GAANNNNTTC 2 cut(s) 36, 174
PfeI GAWTC 3 cut(s) 23, 199, 482
Pfl23II CGTACG 1 cut(s) 423
PflMI CCANNNNNTGG 1 cut(s) 70
PkrI GCNGC 2 cut(s) 49, 134
Ppu21I YACGTR 1 cut(s) 423
PshBI ATTAAT 1 cut(s) 266
Psp6I CCWGG 1 cut(s) 11
PspGI CCWGG 1 cut(s) 11
PspLI CGTACG 1 cut(s) 423
PspN4I GGNNCC 2 cut(s) 357, 513
PsuI RGATCY 1 cut(s) 568
RsaI GTAC 3 cut(s) 392, 414, 425
RsaNI GTAC 3 cut(s) 391, 413, 424
SaqAI TTAA 3 cut(s) 98, 266, 362
SatI GCNGC 2 cut(s) 48, 133
Sau3AI GATC 2 cut(s) 568, 574
ScrFI CCNGG 1 cut(s) 13
SetI ASST 9 cut(s) 106, 121, 128, 262, 425, 457, 490, 517, 598
SfaNI GCATC 3 cut(s) 100, 307, 329
SmlI CTYRAG 1 cut(s) 114
SmoI CTYRAG 1 cut(s) 114
SphI GCATGC 1 cut(s) 167
Sse9I AATT 5 cut(s) 87, 263, 303, 494, 500
SsiI CCGC 1 cut(s) 326
SspMI CTAG 2 cut(s) 51, 291
StyD4I CCNGG 1 cut(s) 11
TaiI ACGT 2 cut(s) 128, 425
TaqI TCGA 3 cut(s) 60, 252, 573
TasI AATT 5 cut(s) 87, 263, 303, 494, 500
TatI WGTACW 2 cut(s) 390, 412
TfiI GAWTC 3 cut(s) 23, 199, 482
Tru1I TTAA 3 cut(s) 98, 266, 362
Tru9I TTAA 3 cut(s) 98, 266, 362
TseFI GTSAC 1 cut(s) 121
TseI GCWGC 2 cut(s) 47, 132
Tsp45I GTSAC 1 cut(s) 121
TspDTI ATGAA 2 cut(s) 284, 588
Van91I CCANNNNNTGG 1 cut(s) 70
VspI ATTAAT 1 cut(s) 266
XapI RAATTY 2 cut(s) 87, 303
XceI RCATGY 1 cut(s) 167
XmiI GTMKAC 1 cut(s) 8
XmnI GAANNNNTTC 2 cut(s) 36, 174
XspI CTAG 2 cut(s) 51, 291
Zsp2I ATGCAT 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.