Rh1DG176900

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000325
Physical Location & Seq
Reverse (-)
36204516 .. 36209209
4694 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG176900.1

Sequence Viewer

Length: 1050 bp
ATGTTGTGCTTCTTTGAACACTATGAGAGAGTTTTGGCTGATCGACGATATGAAGAATTAATTGCTGACTTCAAGATGATGCAAACCTCTCCTGTGTTATCTGCTAACGTAGAGATGTTGCAACATGCAGAGGAGGTGTATACCCCAGAAGCTTTTAGACTCTTCCAGCAACAATACACAAGTATTGGTGATTATGTTGCTAATAAAGTTAGCAAGTCTGAGATGAAATATGAATACAAAGTATCTTATCGTGGTTTTACTCGAGAGCATTTGGTAAAATTTGATGCTTCAGAGCAAACAATAACTTGTAGTTGCATGAAGTTTAATTTTGTTGGGATTTTATGCCGTCATGCATTGAAAGTGTTGGATAGGAAGAACGTGAGAAGAATCCCTCCTACTTGCCTATTAAATCGATGGAGTAAAGAAGCTAAGGCAAGAAGCATCACTTGTTATCATGGACCAAACACTAATGAAAATCTCAAGCAGTCGATTGGAAAGCGGTATAGCCATTTGTGTCGTAATTATCGTGAGATTGCATCCTTTGCCGCAGAACATGAGGAATTAACAAAGTATGCAGATGAATATGCCATCGAGTTGCTTAAAAATTTGGAAGAAAAGAAGAAGAAACTTTTGAAAGAAGATGCATGGGTGATTCAAACTTCAGATGTTGGAGCTTTGGAAGGTGAAGTATCAAATGCACGTGGAGTTAAAAGAAAAGCTACTGTTGGACGACCACGCGGTCGTCATGGTAGATTTAAAGGTGTTCTTGAAGGGAAAAATTGTAAAGCCACATTTAAATCATCAACATCTGTAGCAAGTACCATCTACCTCCCAAACATGGGGAATGGCGAATCTACGTATGATGATTCCCATGATAATTTATCGACGTATGATCATTCTCATGATAGTTTCCCACCTGAACCACCTTCCTATGCAGGCACTTCGATGGACTCTAGTTCTAAACAAAAGCTACCATCTACAAGTATAGGCGACAATTTCAACTCTTTGGATCAGGTTTCAACCACTAGCATTGCATTTCTTATTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

349

Amino Acids

39.79

Weight (kDa)

8.46

Isoelectric Point (pI)

38.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 98 - 125 7e-06 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 738
AccI GTMKAC 1 cut(s) 140
AccII CGCG 1 cut(s) 738
AciI CCGC 3 cut(s) 499, 546, 738
AclWI GGATC 1 cut(s) 1017
AcsI RAATTY 2 cut(s) 278, 604
AcuI CTGAAG 2 cut(s) 273, 645
AcvI CACGTG 1 cut(s) 701
AfaI GTAC 1 cut(s) 820
AfiI CCNNNNNNNGG 2 cut(s) 838, 839
AgsI TTSAA 8 cut(s) 17, 73, 358, 634, 656, 770, 1000, 1020
AluBI AGCT 5 cut(s) 152, 428, 674, 719, 970
AluI AGCT 5 cut(s) 152, 428, 674, 719, 970
AlwI GGATC 1 cut(s) 1017
Ama87I CYCGRG 1 cut(s) 261
ApoI RAATTY 2 cut(s) 278, 604
AseI ATTAAT 1 cut(s) 59
AspS9I GGNCC 1 cut(s) 458
AsuHPI GGTGA 3 cut(s) 200, 661, 695
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 1 cut(s) 458
BbrPI CACGTG 1 cut(s) 701
BccI CCATC 5 cut(s) 408, 596, 830, 940, 982
BceAI ACGGC 1 cut(s) 330
BcgI CGANNNNNNTGC 2 cut(s) 924, 958
BclI TGATCA 1 cut(s) 892
BfaI CTAG 2 cut(s) 954, 1026
BfmI CTRYAG 1 cut(s) 810
BisI GCNGC 1 cut(s) 546
BlsI GCNGC 1 cut(s) 547
Bme18I GGWCC 1 cut(s) 458
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 458
BmsI GCATC 5 cut(s) 69, 274, 450, 545, 631
Bpu10I CCTNAGC 1 cut(s) 429
BpuEI CTTGAG 1 cut(s) 464
Bsa29I ATCGAT 1 cut(s) 412
BsaAI YACGTR 2 cut(s) 701, 858
Bsc4I CCNNNNNNNGG 2 cut(s) 838, 839
Bse3DI GCAATG 1 cut(s) 1029
BseCI ATCGAT 1 cut(s) 412
BseGI GGATG 1 cut(s) 536
BseLI CCNNNNNNNGG 2 cut(s) 838, 839
BseMI GCAATG 1 cut(s) 1029
BseMII CTCAG 1 cut(s) 210
BseRI GAGGAG 1 cut(s) 146
Bsh1236I CGCG 1 cut(s) 738
Bsh1285I CGRYCG 1 cut(s) 742
BshVI ATCGAT 1 cut(s) 412
BsiEI CGRYCG 1 cut(s) 742
BsiHKCI CYCGRG 1 cut(s) 261
BslI CCNNNNNNNGG 2 cut(s) 838, 839
BsoBI CYCGRG 1 cut(s) 261
Bsp143I GATC 3 cut(s) 40, 892, 1009
BspACI CCGC 3 cut(s) 499, 546, 738
BspCNI CTCAG 1 cut(s) 211
BspDI ATCGAT 1 cut(s) 412
BspFNI CGCG 1 cut(s) 738
BspHI TCATGA 1 cut(s) 901
BspPI GGATC 1 cut(s) 1017
BsrDI GCAATG 1 cut(s) 1029
BssMI GATC 3 cut(s) 40, 892, 1009
BssNAI GTATAC 1 cut(s) 141
Bst1107I GTATAC 1 cut(s) 141
Bst4CI ACNGT 1 cut(s) 724
Bst6I CTCTTC 1 cut(s) 167
BstAPI GCANNNNNTGC 1 cut(s) 542
BstBAI YACGTR 2 cut(s) 701, 858
BstC8I GCNNGC 1 cut(s) 937
BstDEI CTNAG 2 cut(s) 219, 429
BstF5I GGATG 1 cut(s) 536
BstFNI CGCG 1 cut(s) 738
BstKTI GATC 3 cut(s) 43, 895, 1012
BstMBI GATC 3 cut(s) 40, 892, 1009
BstMCI CGRYCG 1 cut(s) 742
BstMWI GCNNNNNNNGC 1 cut(s) 542
BstNSI RCATGY 1 cut(s) 128
BstSFI CTRYAG 1 cut(s) 810
BstSNI TACGTA 1 cut(s) 858
BstUI CGCG 1 cut(s) 738
BstZ17I GTATAC 1 cut(s) 141
Bsu15I ATCGAT 1 cut(s) 412
BsuTUI ATCGAT 1 cut(s) 412
BtsCI GGATG 1 cut(s) 536
Cac8I GCNNGC 1 cut(s) 937
CciI TCATGA 1 cut(s) 901
Cfr13I GGNCC 1 cut(s) 458
ClaI ATCGAT 1 cut(s) 412
Csp6I GTAC 1 cut(s) 819
CspCI CAANNNNNGTGG 2 cut(s) 1012, 1047
CviJI RGCY 8 cut(s) 38, 152, 428, 507, 674, 719, 788, 970
CviKI_1 RGCY 8 cut(s) 38, 152, 428, 507, 674, 719, 788, 970
CviQI GTAC 1 cut(s) 819
DdeI CTNAG 2 cut(s) 219, 429
DpnI GATC 3 cut(s) 42, 894, 1011
DpnII GATC 3 cut(s) 40, 892, 1009
DraI TTTAAA 2 cut(s) 757, 796
DrdI GACNNNNNNGTC 1 cut(s) 738
DseDI GACNNNNNNGTC 1 cut(s) 738
Eam1104I CTCTTC 1 cut(s) 167
EarI CTCTTC 1 cut(s) 167
Eco105I TACGTA 1 cut(s) 858
Eco47I GGWCC 1 cut(s) 458
Eco57I CTGAAG 2 cut(s) 273, 645
Eco72I CACGTG 1 cut(s) 701
Eco88I CYCGRG 1 cut(s) 261
EcoT22I ATGCAT 2 cut(s) 355, 646
FalI AAGNNNNNCTT 4 cut(s) 430, 462, 750, 782
FbaI TGATCA 1 cut(s) 892
FblI GTMKAC 1 cut(s) 140
Fnu4HI GCNGC 1 cut(s) 546
FokI GGATG 1 cut(s) 523
Fsp4HI GCNGC 1 cut(s) 546
FspBI CTAG 2 cut(s) 954, 1026
GluI GCNGC 1 cut(s) 546
HindIII AAGCTT 1 cut(s) 150
HinfI GANTC 6 cut(s) 159, 387, 652, 851, 866, 950
HphI GGTGA 3 cut(s) 200, 661, 695
Hpy166II GTNNAC 1 cut(s) 141
Hpy188I TCNGA 3 cut(s) 220, 292, 664
Hpy188III TCNNGA 5 cut(s) 73, 263, 527, 767, 902
Hpy8I GTNNAC 1 cut(s) 141
Hpy99I CGWCG 2 cut(s) 48, 889
HpyAV CCTTC 3 cut(s) 674, 764, 936
HpyCH4III ACNGT 1 cut(s) 724
HpyCH4IV ACGT 5 cut(s) 108, 378, 700, 857, 887
HpyF10VI GCNNNNNNNGC 1 cut(s) 542
HpyF3I CTNAG 2 cut(s) 219, 429
HpySE526I ACGT 5 cut(s) 108, 378, 700, 857, 887
Ksp22I TGATCA 1 cut(s) 892
Kzo9I GATC 3 cut(s) 40, 892, 1009
LmnI GCTCC 1 cut(s) 671
LpnPI CCDG 6 cut(s) 105, 159, 179, 921, 930, 998
LweI GCATC 5 cut(s) 69, 274, 450, 545, 631
MaeI CTAG 2 cut(s) 954, 1026
MaeII ACGT 5 cut(s) 108, 378, 700, 857, 887
MalI GATC 3 cut(s) 42, 894, 1011
MboI GATC 3 cut(s) 40, 892, 1009
MboII GAAGA 8 cut(s) 65, 154, 385, 396, 623, 631, 634, 650
MlyI GAGTC 2 cut(s) 153, 944
MmeI TCCRAC 3 cut(s) 345, 649, 706
MnlI CCTC 6 cut(s) 97, 124, 127, 402, 550, 839
Mph1103I ATGCAT 2 cut(s) 355, 646
MseI TTAA 8 cut(s) 59, 324, 407, 563, 600, 708, 756, 795
MslI CAYNNNNRTG 2 cut(s) 900, 944
MvnI CGCG 1 cut(s) 738
MwoI GCNNNNNNNGC 1 cut(s) 542
NdeII GATC 3 cut(s) 40, 892, 1009
NsiI ATGCAT 2 cut(s) 355, 646
NspI RCATGY 1 cut(s) 128
PaeR7I CTCGAG 1 cut(s) 261
PagI TCATGA 1 cut(s) 901
PcsI WCGNNNNNNNCGW 1 cut(s) 523
PfeI GAWTC 4 cut(s) 387, 652, 851, 866
PkrI GCNGC 1 cut(s) 547
PleI GAGTC 2 cut(s) 153, 944
PmaCI CACGTG 1 cut(s) 701
PmlI CACGTG 1 cut(s) 701
PpsI GAGTC 2 cut(s) 153, 944
Ppu21I YACGTR 2 cut(s) 701, 858
PshBI ATTAAT 1 cut(s) 59
PspCI CACGTG 1 cut(s) 701
PspPI GGNCC 1 cut(s) 458
RsaI GTAC 1 cut(s) 820
RsaNI GTAC 1 cut(s) 819
RseI CAYNNNNRTG 2 cut(s) 900, 944
SaqAI TTAA 8 cut(s) 59, 324, 407, 563, 600, 708, 756, 795
SatI GCNGC 1 cut(s) 546
Sau3AI GATC 3 cut(s) 40, 892, 1009
Sau96I GGNCC 1 cut(s) 458
SchI GAGTC 2 cut(s) 153, 944
SfaNI GCATC 5 cut(s) 69, 274, 450, 545, 631
SfcI CTRYAG 1 cut(s) 810
Sfr274I CTCGAG 1 cut(s) 261
SinI GGWCC 1 cut(s) 458
SlaI CTCGAG 1 cut(s) 261
SmiI ATTTAAAT 1 cut(s) 796
SmiMI CAYNNNNRTG 2 cut(s) 900, 944
SmlI CTYRAG 2 cut(s) 261, 479
SmoI CTYRAG 2 cut(s) 261, 479
SnaBI TACGTA 1 cut(s) 858
SsiI CCGC 3 cut(s) 499, 546, 738
SspMI CTAG 2 cut(s) 954, 1026
SwaI ATTTAAAT 1 cut(s) 796
TaaI ACNGT 1 cut(s) 724
TaiI ACGT 5 cut(s) 111, 381, 703, 860, 890
TaqI TCGA 7 cut(s) 43, 262, 412, 488, 591, 884, 944
TauI GCSGC 1 cut(s) 548
TfiI GAWTC 4 cut(s) 387, 652, 851, 866
Tru1I TTAA 8 cut(s) 59, 324, 407, 563, 600, 708, 756, 795
Tru9I TTAA 8 cut(s) 59, 324, 407, 563, 600, 708, 756, 795
TspDTI ATGAA 6 cut(s) 66, 239, 246, 332, 486, 594
VpaK11BI GGWCC 1 cut(s) 458
VspI ATTAAT 1 cut(s) 59
XapI RAATTY 2 cut(s) 278, 604
XceI RCATGY 1 cut(s) 128
XhoI CTCGAG 1 cut(s) 261
XmiI GTMKAC 1 cut(s) 140
XspI CTAG 2 cut(s) 954, 1026
Zsp2I ATGCAT 2 cut(s) 355, 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.