Rh2DG449100

Protein FAR1-RELATED SEQUENCE 5-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
65121035 .. 65121592
558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG449100.1

Sequence Viewer

Length: 558 bp
ATGATGCAAACTTCTCCTGTGTTATCTGCTAACGTAGAGATGTTGCAACATGCAGAGGAGGTGTATACCCCAGAAGCTTTTAGACTCTTCCAGCAACAATACACAAGTATTGGTGATTATGTTGCTAATAAAGTTAGCAAGTCTGAGATGCAATATGAATACAAAGTATCTTATCGTGGTGTTGCTCGAGAGCATTTGGTAAAATTTGATGCTTCAATGCAAACAATAACTTGTAGTTGCATGAAGTTTAATTTTGTTGGGATTTTATGCCATCATGCAATGAAAGTGTTGGATAGGAAGAATGTGAGAAGAATCCCTCCTACTTGCATATTAAATCGATGGAGTAAAGAAGCTAAGGCAAGGAGCATCGCTAGTTATCATGGACCAAAGACTAATGAAAATTTGAAGCAGTCAATTGGAAAGCGATACAGCCATTTGTGTCGTAATTATCGTGAGATTGCATCCTTTGCCTCAGAACATGAGGAACAAATAGGTATGCAAATGAATATGCCATTGAGTTGCTTAAAAATTTGGAAGAAAAGAAGAAGAAATTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

185

Amino Acids

21.64

Weight (kDa)

9.57

Isoelectric Point (pI)

50.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 65
AcsI RAATTY 3 cut(s) 203, 400, 528
AgsI TTSAA 2 cut(s) 216, 406
AluBI AGCT 2 cut(s) 77, 353
AluI AGCT 2 cut(s) 77, 353
Ama87I CYCGRG 1 cut(s) 186
ApoI RAATTY 3 cut(s) 203, 400, 528
AspS9I GGNCC 1 cut(s) 383
AsuHPI GGTGA 1 cut(s) 125
AvaI CYCGRG 1 cut(s) 186
AvaII GGWCC 1 cut(s) 383
BccI CCATC 2 cut(s) 279, 333
BfaI CTAG 1 cut(s) 372
Bme18I GGWCC 1 cut(s) 383
BmeT110I CYCGRG 1 cut(s) 186
BmgT120I GGNCC 1 cut(s) 383
BmsI GCATC 4 cut(s) 138, 199, 375, 470
Bpu10I CCTNAGC 1 cut(s) 354
Bsa29I ATCGAT 1 cut(s) 337
Bse3DI GCAATG 1 cut(s) 285
BseCI ATCGAT 1 cut(s) 337
BseGI GGATG 1 cut(s) 461
BseMI GCAATG 1 cut(s) 285
BseMII CTCAG 2 cut(s) 135, 486
BseRI GAGGAG 1 cut(s) 71
BshVI ATCGAT 1 cut(s) 337
BsiHKCI CYCGRG 1 cut(s) 186
BsoBI CYCGRG 1 cut(s) 186
BspCNI CTCAG 2 cut(s) 136, 485
BspDI ATCGAT 1 cut(s) 337
BsrDI GCAATG 1 cut(s) 285
BssNAI GTATAC 1 cut(s) 66
Bst1107I GTATAC 1 cut(s) 66
Bst6I CTCTTC 1 cut(s) 92
BstAPI GCANNNNNTGC 1 cut(s) 467
BstDEI CTNAG 3 cut(s) 144, 354, 472
BstF5I GGATG 1 cut(s) 461
BstMWI GCNNNNNNNGC 1 cut(s) 467
BstNSI RCATGY 1 cut(s) 53
BstZ17I GTATAC 1 cut(s) 66
Bsu15I ATCGAT 1 cut(s) 337
BsuTUI ATCGAT 1 cut(s) 337
BtgZI GCGATG 1 cut(s) 352
BtsCI GGATG 1 cut(s) 461
Cfr13I GGNCC 1 cut(s) 383
ClaI ATCGAT 1 cut(s) 337
CviAII CATG 5 cut(s) 50, 241, 275, 380, 479
CviJI RGCY 3 cut(s) 77, 353, 432
CviKI_1 RGCY 3 cut(s) 77, 353, 432
DdeI CTNAG 3 cut(s) 144, 354, 472
Eam1104I CTCTTC 1 cut(s) 92
EarI CTCTTC 1 cut(s) 92
Eco47I GGWCC 1 cut(s) 383
Eco88I CYCGRG 1 cut(s) 186
FaeI CATG 5 cut(s) 53, 244, 278, 383, 482
FatI CATG 5 cut(s) 49, 240, 274, 379, 478
FblI GTMKAC 1 cut(s) 65
FokI GGATG 1 cut(s) 448
FspBI CTAG 1 cut(s) 372
Hin1II CATG 5 cut(s) 53, 244, 278, 383, 482
HindIII AAGCTT 1 cut(s) 75
HinfI GANTC 2 cut(s) 84, 312
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 1 cut(s) 66
Hpy188I TCNGA 2 cut(s) 145, 475
Hpy188III TCNNGA 2 cut(s) 188, 452
Hpy8I GTNNAC 1 cut(s) 66
HpyCH4IV ACGT 1 cut(s) 33
HpyF10VI GCNNNNNNNGC 1 cut(s) 467
HpyF3I CTNAG 3 cut(s) 144, 354, 472
HpySE526I ACGT 1 cut(s) 33
Hsp92II CATG 5 cut(s) 53, 244, 278, 383, 482
LmnI GCTCC 1 cut(s) 363
LpnPI CCDG 3 cut(s) 30, 84, 104
LweI GCATC 4 cut(s) 138, 199, 375, 470
MaeI CTAG 1 cut(s) 372
MaeII ACGT 1 cut(s) 33
MboII GAAGA 6 cut(s) 79, 310, 321, 547, 555, 558
MfeI CAATTG 1 cut(s) 414
MluCI AATT 7 cut(s) 203, 250, 400, 414, 445, 528, 550
MlyI GAGTC 1 cut(s) 78
MmeI TCCRAC 1 cut(s) 270
MnlI CCTC 5 cut(s) 49, 52, 327, 475, 481
MseI TTAA 3 cut(s) 249, 332, 524
MunI CAATTG 1 cut(s) 414
MwoI GCNNNNNNNGC 1 cut(s) 467
NlaIII CATG 5 cut(s) 53, 244, 278, 383, 482
NspI RCATGY 1 cut(s) 53
PaeR7I CTCGAG 1 cut(s) 186
PcsI WCGNNNNNNNCGW 1 cut(s) 448
PfeI GAWTC 1 cut(s) 312
PleI GAGTC 1 cut(s) 78
PpsI GAGTC 1 cut(s) 78
PspPI GGNCC 1 cut(s) 383
SaqAI TTAA 3 cut(s) 249, 332, 524
Sau96I GGNCC 1 cut(s) 383
SchI GAGTC 1 cut(s) 78
SetI ASST 5 cut(s) 36, 63, 79, 355, 496
SfaNI GCATC 4 cut(s) 138, 199, 375, 470
Sfr274I CTCGAG 1 cut(s) 186
SinI GGWCC 1 cut(s) 383
SlaI CTCGAG 1 cut(s) 186
SmlI CTYRAG 1 cut(s) 186
SmoI CTYRAG 1 cut(s) 186
Sse9I AATT 7 cut(s) 203, 250, 400, 414, 445, 528, 550
SspMI CTAG 1 cut(s) 372
TaiI ACGT 1 cut(s) 36
TaqI TCGA 2 cut(s) 187, 337
TasI AATT 7 cut(s) 203, 250, 400, 414, 445, 528, 550
TfiI GAWTC 1 cut(s) 312
Tru1I TTAA 3 cut(s) 249, 332, 524
Tru9I TTAA 3 cut(s) 249, 332, 524
TspDTI ATGAA 5 cut(s) 171, 257, 296, 411, 518
VpaK11BI GGWCC 1 cut(s) 383
XapI RAATTY 3 cut(s) 203, 400, 528
XceI RCATGY 1 cut(s) 53
XhoI CTCGAG 1 cut(s) 186
XmiI GTMKAC 1 cut(s) 65
XspI CTAG 1 cut(s) 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.