RLG00000035244

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000325
Physical Location & Seq
Forward (+)
63529341 .. 63532558
3218 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035244

Sequence Viewer

Length: 861 bp
ATGGACTTGGAAGACAATTGCAAAGAGGATGAAATTCAAACAAACTCACGTCGAAAGTTGGATTTTGAAAATGGAACTGACATGAACACTTGTGTGGAAGATGAAAGTTTGGAAGAAAAGATAGCAACAAGAGCTGCAGGGTCTAAAAGAGCCTATGAACTTGTTCTATCCAGATTGGACAGCATACGAGAAGATGTGGATACATGTTTGAAAGAAGAAGCCGAGGAAAACTCTACTCAACTGATTTCACCTACCACCAACAATGCATCAGAGCTTAATGAGGTGGTGTGTGTTGATGATCAAGTTAAAGGGATTAAAGTTAAAGAGAAACTTAAAGGTATTGGTTGTTCAACTAGGCCTAAAAATGCTCTAGAGAAGCTAACCATGGCAAAGAGGAGAAGACTTGAAAATAAAGATATGAACTCTTCATCTGTTGCTTCCAAAACTGCATCTACAATGCAAAGTCCTTCTATGACGCAAAGTGTTTCAGCGACACAACATTCTTCTTCTACACAGCCTCTTCTACCTCTTTCTATGCAAAGGGTTTCTAATGTGCAACTTACCTTGCCTCTGTCACAACATGTTCTGCCTTCAGCACCCTTATTGCAACTGGAACCTAATTGTGGTAAGTTAACAATGGACATGCCCATTAAAGAGAGAGAATTGGCTCAGCCTCCATTTATGCAGAAGCTTTCCAGTGGCAATAGTTTAGGCATGACTTTTCAAGCTAACAAGCCTCAACTAATGCCTTTTGCACCACAAGTTCATTTTCCCCAGAGACAATCCAAAGTAGCAGCAAGCATGGAGAATGGCCAGATGGTCAAGGCTAGGGAGTGGTTGCAATTTCGCAAGCAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

287

Amino Acids

31.94

Weight (kDa)

6.85

Isoelectric Point (pI)

47.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 811
AcsI RAATTY 1 cut(s) 33
AcuI CTGAAG 1 cut(s) 576
AfiI CCNNNNNNNGG 1 cut(s) 623
AflIII ACRYGT 2 cut(s) 203, 580
AgsI TTSAA 6 cut(s) 38, 68, 211, 351, 407, 725
AjiI CACGTC 1 cut(s) 50
AleI CACNNNNGTG 1 cut(s) 92
AluBI AGCT 5 cut(s) 134, 274, 379, 691, 728
AluI AGCT 5 cut(s) 134, 274, 379, 691, 728
Alw26I GTCTC 1 cut(s) 772
AoxI GGCC 2 cut(s) 356, 811
ApeKI GCWGC 2 cut(s) 134, 794
ApoI RAATTY 1 cut(s) 33
Asp700I GAANNNNTTC 1 cut(s) 162
AsuHPI GGTGA 1 cut(s) 240
BalI TGGCCA 1 cut(s) 813
BbsI GAAGAC 2 cut(s) 18, 406
BbvI GCAGC 2 cut(s) 121, 806
BccI CCATC 1 cut(s) 811
BciVI GTATCC 1 cut(s) 193
BclI TGATCA 1 cut(s) 298
BcoDI GTCTC 1 cut(s) 772
BfaI CTAG 3 cut(s) 354, 371, 828
BfmI CTRYAG 1 cut(s) 135
BfuI GTATCC 1 cut(s) 193
BisI GCNGC 2 cut(s) 135, 795
BlpI GCTNAGC 1 cut(s) 669
BlsI GCNGC 2 cut(s) 136, 796
BmgBI CACGTC 1 cut(s) 50
BmiI GGNNCC 1 cut(s) 615
BmsI GCATC 2 cut(s) 275, 458
BpiI GAAGAC 2 cut(s) 18, 406
BplI GAGNNNNNCTC 2 cut(s) 215, 247
Bpu1102I GCTNAGC 1 cut(s) 669
BsaJI CCNNGG 2 cut(s) 222, 384
Bsc4I CCNNNNNNNGG 1 cut(s) 623
Bse1I ACTGG 2 cut(s) 615, 696
BseDI CCNNGG 2 cut(s) 222, 384
BseGI GGATG 1 cut(s) 34
BseLI CCNNNNNNNGG 1 cut(s) 623
BseMII CTCAG 1 cut(s) 683
BseNI ACTGG 2 cut(s) 615, 696
BseRI GAGGAG 1 cut(s) 409
BseXI GCAGC 2 cut(s) 121, 806
BshFI GGCC 2 cut(s) 358, 813
BslI CCNNNNNNNGG 1 cut(s) 623
BsmAI GTCTC 1 cut(s) 772
BsnI GGCC 2 cut(s) 358, 813
Bsp143I GATC 1 cut(s) 298
Bsp1720I GCTNAGC 1 cut(s) 669
Bsp19I CCATGG 1 cut(s) 384
BspANI GGCC 2 cut(s) 358, 813
BspCNI CTCAG 1 cut(s) 682
BspLI GGNNCC 1 cut(s) 615
BspMAI CTGCAG 1 cut(s) 139
BsrI ACTGG 2 cut(s) 615, 696
BssECI CCNNGG 2 cut(s) 222, 384
BssMI GATC 1 cut(s) 298
BssT1I CCWWGG 1 cut(s) 384
Bst6I CTCTTC 2 cut(s) 430, 525
BstC8I GCNNGC 2 cut(s) 799, 851
BstDEI CTNAG 1 cut(s) 669
BstDSI CCRYGG 1 cut(s) 384
BstF5I GGATG 1 cut(s) 34
BstKTI GATC 1 cut(s) 301
BstMAI GTCTC 1 cut(s) 772
BstMBI GATC 1 cut(s) 298
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstNSI RCATGY 3 cut(s) 207, 584, 646
BstSFI CTRYAG 1 cut(s) 135
BstV1I GCAGC 2 cut(s) 121, 806
BstV2I GAAGAC 2 cut(s) 18, 406
BsuI GTATCC 1 cut(s) 193
BsuRI GGCC 2 cut(s) 358, 813
BtgI CCRYGG 1 cut(s) 384
BtrI CACGTC 1 cut(s) 50
BtsCI GGATG 1 cut(s) 34
BtsIMutI CAGTG 1 cut(s) 703
Cac8I GCNNGC 2 cut(s) 799, 851
CseI GACGC 1 cut(s) 484
CviAII CATG 7 cut(s) 82, 204, 385, 581, 643, 715, 802
DdeI CTNAG 1 cut(s) 669
DpnI GATC 1 cut(s) 300
DpnII GATC 1 cut(s) 298
EaeI YGGCCR 1 cut(s) 811
Eam1104I CTCTTC 2 cut(s) 430, 525
EarI CTCTTC 2 cut(s) 430, 525
Eco130I CCWWGG 1 cut(s) 384
Eco147I AGGCCT 1 cut(s) 358
Eco57I CTGAAG 1 cut(s) 576
EcoT14I CCWWGG 1 cut(s) 384
EcoT22I ATGCAT 1 cut(s) 268
ErhI CCWWGG 1 cut(s) 384
FaeI CATG 7 cut(s) 85, 207, 388, 584, 646, 718, 805
FalI AAGNNNNNCTT 2 cut(s) 315, 347
FatI CATG 7 cut(s) 81, 203, 384, 580, 642, 714, 801
FbaI TGATCA 1 cut(s) 298
Fnu4HI GCNGC 2 cut(s) 135, 795
FokI GGATG 1 cut(s) 41
Fsp4HI GCNGC 2 cut(s) 135, 795
FspBI CTAG 3 cut(s) 354, 371, 828
GluI GCNGC 2 cut(s) 135, 795
HaeIII GGCC 2 cut(s) 358, 813
HgaI GACGC 1 cut(s) 484
Hin1II CATG 7 cut(s) 85, 207, 388, 584, 646, 718, 805
HincII GTYRAC 1 cut(s) 633
HindII GTYRAC 1 cut(s) 633
HindIII AAGCTT 1 cut(s) 689
HpaI GTTAAC 1 cut(s) 633
HphI GGTGA 1 cut(s) 240
Hpy166II GTNNAC 1 cut(s) 633
Hpy188I TCNGA 1 cut(s) 271
Hpy188III TCNNGA 2 cut(s) 171, 371
Hpy8I GTNNAC 1 cut(s) 633
Hpy99I CGWCG 1 cut(s) 54
HpyAV CCTTC 2 cut(s) 477, 600
HpyCH4IV ACGT 1 cut(s) 49
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 1 cut(s) 669
HpySE526I ACGT 1 cut(s) 49
Hsp92II CATG 7 cut(s) 85, 207, 388, 584, 646, 718, 805
Ksp22I TGATCA 1 cut(s) 298
KspAI GTTAAC 1 cut(s) 633
Kzo9I GATC 1 cut(s) 298
LpnPI CCDG 6 cut(s) 123, 184, 596, 709, 788, 827
Lsp1109I GCAGC 2 cut(s) 121, 806
LweI GCATC 2 cut(s) 275, 458
MaeI CTAG 3 cut(s) 354, 371, 828
MaeII ACGT 1 cut(s) 49
MaeIII GTNAC 1 cut(s) 573
MalI GATC 1 cut(s) 300
MboI GATC 1 cut(s) 298
MfeI CAATTG 1 cut(s) 16
MlsI TGGCCA 1 cut(s) 813
MluCI AATT 6 cut(s) 16, 33, 619, 662, 842, 856
MluNI TGGCCA 1 cut(s) 813
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 9 cut(s) 19, 217, 274, 387, 528, 537, 579, 684, 747
Mox20I TGGCCA 1 cut(s) 813
Mph1103I ATGCAT 1 cut(s) 268
MroXI GAANNNNTTC 1 cut(s) 162
MscI TGGCCA 1 cut(s) 813
MseI TTAA 7 cut(s) 276, 306, 315, 321, 333, 632, 651
MslI CAYNNNNRTG 1 cut(s) 92
Msp20I TGGCCA 1 cut(s) 813
MunI CAATTG 1 cut(s) 16
MwoI GCNNNNNNNGC 1 cut(s) 131
NcoI CCATGG 1 cut(s) 384
NdeII GATC 1 cut(s) 298
NlaIII CATG 7 cut(s) 85, 207, 388, 584, 646, 718, 805
NlaIV GGNNCC 1 cut(s) 615
NmeAIII GCCGAG 1 cut(s) 247
NmuCI GTSAC 1 cut(s) 573
NsiI ATGCAT 1 cut(s) 268
NspI RCATGY 3 cut(s) 207, 584, 646
OliI CACNNNNGTG 1 cut(s) 92
PceI AGGCCT 1 cut(s) 358
PciI ACATGT 2 cut(s) 203, 580
PdmI GAANNNNTTC 1 cut(s) 162
PkrI GCNGC 2 cut(s) 136, 796
PscI ACATGT 2 cut(s) 203, 580
PspN4I GGNNCC 1 cut(s) 615
PsrI GAACNNNNNNTAC 2 cut(s) 331, 363
PstI CTGCAG 1 cut(s) 139
RseI CAYNNNNRTG 1 cut(s) 92
SaqAI TTAA 7 cut(s) 276, 306, 315, 321, 333, 632, 651
SatI GCNGC 2 cut(s) 135, 795
Sau3AI GATC 1 cut(s) 298
SfaNI GCATC 2 cut(s) 275, 458
SfcI CTRYAG 1 cut(s) 135
SmiMI CAYNNNNRTG 1 cut(s) 92
Sse9I AATT 6 cut(s) 16, 33, 619, 662, 842, 856
SseBI AGGCCT 1 cut(s) 358
SspMI CTAG 3 cut(s) 354, 371, 828
StuI AGGCCT 1 cut(s) 358
StyI CCWWGG 1 cut(s) 384
TaiI ACGT 1 cut(s) 52
TaqI TCGA 1 cut(s) 52
TasI AATT 6 cut(s) 16, 33, 619, 662, 842, 856
Tru1I TTAA 7 cut(s) 276, 306, 315, 321, 333, 632, 651
Tru9I TTAA 7 cut(s) 276, 306, 315, 321, 333, 632, 651
TscAI CASTG 1 cut(s) 703
TseFI GTSAC 1 cut(s) 573
TseI GCWGC 2 cut(s) 134, 794
Tsp45I GTSAC 1 cut(s) 573
TspDTI ATGAA 7 cut(s) 45, 98, 117, 171, 417, 434, 755
TspRI CASTG 1 cut(s) 703
XapI RAATTY 1 cut(s) 33
XbaI TCTAGA 1 cut(s) 370
XceI RCATGY 3 cut(s) 207, 584, 646
XmnI GAANNNNTTC 1 cut(s) 162
XspI CTAG 3 cut(s) 354, 371, 828
Zsp2I ATGCAT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.