Rmu_sc0005319.1_g000016

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005319.1
OG0000325
Physical Location & Seq
Reverse (-)
78662 .. 81850
3189 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005319.1_g000016.1.cds

Sequence Viewer

Length: 1203 bp
atgttgaccggagacccgccggagttggccggagacctcgccggagaagagagagaggatggaattccttatgctgctaagaatctcagtcatgtctttcatggatcttcagaatttgttgatgattttagcaattgcatgtatgactatgagtttgagcatgagtggctattagcatggaatggacttcttgagaaatatggcctgaaggaaaacaagtggttgaataatttatttgaattgcgggaaaaatgggcactagtgtatgggagacatactttcactgccgatatgaaaagcacacagcgaagtgaatgcatgaataatgtgcttaagaaatatttgaagccagagcataatcttttgcggtttttcgaacattatgaaagagttttggctgatcgaagatatcaagagttgattgctgaatataagatgatacaaacaactcctgtcttggcagtaagtgcacatatgctgcaacatggagcagaggtgtatactccagaggttttcttgctgtttcagaaagaatttgtgagaattcataattatagtacttacaaggttggtaagtctgggatgacatcagagtatatagtatcatatagttctgaacataatgagcacttggtcaaatatgaagcttcaacacaaaatgttaattgtagttgtaaaaagttcacgtttgttgggattttgtgtgctcatgcactaaaagtgcttgacaagaagaatgtgaagaagattccaccgcaatacattttaaagcgatggacaagagaagcaaaaattatgagtattactagttatcatcctactgagattcatggtaatcctaaggagtcgattggcagacggtatggctacttgtgccgcacttctcgtgatattttaactgttgcagcagatgatgaagagttgacgagatatgcacatgaatgtttggttgagatgctcaaaggcttagagttaataaagaaaaatcgcactgagaaagaggggagaagttctagtgatagcagcgaagtgaatgctacttttggtcaaagtgaagaggtgagattggaacttgggacctcggacgtagggtggatgctgagtaaagaggatcagattttggatgacaaccctgctgaagcttatttgcttttggatactgctgaagcttattcgtctatagaagattcagtcaacaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

400

Amino Acids

46.23

Weight (kDa)

5.59

Isoelectric Point (pI)

42.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 500
AciI CCGC 5 cut(s) 17, 244, 367, 755, 877
AclWI GGATC 2 cut(s) 112, 1119
AcoI YGGCCR 1 cut(s) 27
AcsI RAATTY 4 cut(s) 63, 113, 533, 543
AcuI CTGAAG 4 cut(s) 93, 227, 1158, 1185
AfaI GTAC 1 cut(s) 559
AflII CTTAAG 1 cut(s) 332
AgsI TTSAA 4 cut(s) 226, 239, 346, 651
AhlI ACTAGT 2 cut(s) 259, 806
AluBI AGCT 3 cut(s) 647, 1142, 1169
AluI AGCT 3 cut(s) 647, 1142, 1169
Alw21I GWGCWC 3 cut(s) 472, 630, 709
Alw26I GTCTC 3 cut(s) 6, 27, 265
Alw44I GTGCAC 1 cut(s) 468
AlwI GGATC 2 cut(s) 112, 1119
AoxI GGCC 2 cut(s) 27, 202
ApaLI GTGCAC 1 cut(s) 468
ApeKI GCWGC 4 cut(s) 74, 478, 905, 1023
ApoI RAATTY 4 cut(s) 63, 113, 533, 543
ArsI GACNNNNNNTTYG 2 cut(s) 137, 169
AspS9I GGNCC 1 cut(s) 1077
AsuHPI GGTGA 1 cut(s) 1072
AsuII TTCGAA 1 cut(s) 375
AvaII GGWCC 1 cut(s) 1077
AxyI CCTNAGG 1 cut(s) 840
BaeGI GKGCMC 2 cut(s) 259, 472
BauI CACGAG 1 cut(s) 885
Bbv12I GWGCWC 3 cut(s) 472, 630, 709
BbvI GCAGC 4 cut(s) 61, 465, 917, 1035
BccI CCATC 2 cut(s) 53, 768
BcgI CGANNNNNNTGC 4 cut(s) 297, 331, 1016, 1050
BciVI GTATCC 1 cut(s) 1150
BcoDI GTCTC 3 cut(s) 6, 27, 265
BcuI ACTAGT 2 cut(s) 259, 806
BfaI CTAG 3 cut(s) 260, 807, 1014
BfmI CTRYAG 1 cut(s) 1179
BfrI CTTAAG 1 cut(s) 332
BfuI GTATCC 1 cut(s) 1150
BisI GCNGC 5 cut(s) 75, 479, 877, 906, 1024
BlsI GCNGC 5 cut(s) 76, 480, 878, 907, 1025
BmcAI AGTACT 1 cut(s) 559
Bme18I GGWCC 1 cut(s) 1077
BmgT120I GGNCC 1 cut(s) 1077
BmiI GGNNCC 1 cut(s) 1078
BmsI GCATC 2 cut(s) 945, 1086
BpmI CTGGAG 1 cut(s) 489
Bpu14I TTCGAA 1 cut(s) 375
BpuEI CTTGAG 1 cut(s) 212
BsaI GGTCTC 2 cut(s) 6, 27
BsaJI CCNNGG 1 cut(s) 1080
BsaWI WCCGGW 1 cut(s) 8
BsaXI ACNNNNNCTCC 2 cut(s) 480, 510
Bse21I CCTNAGG 1 cut(s) 840
BseDI CCNNGG 1 cut(s) 1080
BseGI GGATG 5 cut(s) 64, 588, 814, 1101, 1129
BseMII CTCAG 4 cut(s) 100, 813, 984, 1091
BseSI GKGCMC 2 cut(s) 259, 472
BseXI GCAGC 4 cut(s) 61, 465, 917, 1035
BshFI GGCC 2 cut(s) 29, 204
BsiHKAI GWGCWC 3 cut(s) 472, 630, 709
BsiSI CCGG 4 cut(s) 9, 20, 30, 42
BslFI GGGAC 1 cut(s) 1090
BsmAI GTCTC 3 cut(s) 6, 27, 265
BsmFI GGGAC 1 cut(s) 1090
BsmI GAATGC 2 cut(s) 320, 1039
BsnI GGCC 2 cut(s) 29, 204
Bso31I GGTCTC 2 cut(s) 6, 27
Bsp119I TTCGAA 1 cut(s) 375
Bsp1286I GDGCHC 4 cut(s) 259, 472, 630, 709
Bsp143I GATC 3 cut(s) 104, 400, 1111
BspACI CCGC 5 cut(s) 17, 244, 367, 755, 877
BspANI GGCC 2 cut(s) 29, 204
BspCNI CTCAG 4 cut(s) 99, 814, 985, 1092
BspLI GGNNCC 1 cut(s) 1078
BspPI GGATC 2 cut(s) 112, 1119
BspT104I TTCGAA 1 cut(s) 375
BspTI CTTAAG 1 cut(s) 332
BspTNI GGTCTC 2 cut(s) 6, 27
BssECI CCNNGG 1 cut(s) 1080
BssMI GATC 3 cut(s) 104, 400, 1111
BssNAI GTATAC 1 cut(s) 501
BssSI CACGAG 1 cut(s) 885
Bst1107I GTATAC 1 cut(s) 501
Bst2BI CACGAG 1 cut(s) 885
Bst4CI ACNGT 2 cut(s) 861, 901
Bst6I CTCTTC 3 cut(s) 42, 912, 1050
BstAFI CTTAAG 1 cut(s) 332
BstAPI GCANNNNNTGC 1 cut(s) 467
BstBI TTCGAA 1 cut(s) 375
BstDEI CTNAG 7 cut(s) 78, 86, 822, 840, 967, 993, 1100
BstF5I GGATG 5 cut(s) 64, 588, 814, 1101, 1129
BstKTI GATC 3 cut(s) 107, 403, 1114
BstMAI GTCTC 3 cut(s) 6, 27, 265
BstMBI GATC 3 cut(s) 104, 400, 1111
BstMWI GCNNNNNNNGC 3 cut(s) 166, 467, 873
BstNSI RCATGY 1 cut(s) 142
BstSFI CTRYAG 1 cut(s) 1179
BstSLI GKGCMC 2 cut(s) 259, 472
BstV1I GCAGC 4 cut(s) 61, 465, 917, 1035
BstX2I RGATCY 1 cut(s) 104
BstYI RGATCY 1 cut(s) 104
BstZ17I GTATAC 1 cut(s) 501
Bsu36I CCTNAGG 1 cut(s) 840
BsuI GTATCC 1 cut(s) 1150
BsuRI GGCC 2 cut(s) 29, 204
BtgZI GCGATG 1 cut(s) 787
BtsCI GGATG 5 cut(s) 64, 588, 814, 1101, 1129
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 2 cut(s) 282, 990
Cfr13I GGNCC 1 cut(s) 1077
Csp6I GTAC 1 cut(s) 558
CviQI GTAC 1 cut(s) 558
DdeI CTNAG 7 cut(s) 78, 86, 822, 840, 967, 993, 1100
DpnI GATC 3 cut(s) 106, 402, 1113
DpnII GATC 3 cut(s) 104, 400, 1111
DraI TTTAAA 1 cut(s) 768
EaeI YGGCCR 1 cut(s) 27
Eam1104I CTCTTC 3 cut(s) 42, 912, 1050
EarI CTCTTC 3 cut(s) 42, 912, 1050
Eco31I GGTCTC 2 cut(s) 6, 27
Eco32I GATATC 1 cut(s) 410
Eco47I GGWCC 1 cut(s) 1077
Eco57I CTGAAG 4 cut(s) 93, 227, 1158, 1185
Eco81I CCTNAGG 1 cut(s) 840
EcoO109I RGGNCCY 1 cut(s) 1077
EcoRI GAATTC 2 cut(s) 63, 543
EcoRV GATATC 1 cut(s) 410
EcoT22I ATGCAT 1 cut(s) 320
FaqI GGGAC 1 cut(s) 1090
FauI CCCGC 2 cut(s) 24, 237
FauNDI CATATG 1 cut(s) 474
FblI GTMKAC 1 cut(s) 500
Fnu4HI GCNGC 5 cut(s) 75, 479, 877, 906, 1024
FokI GGATG 5 cut(s) 71, 595, 801, 1108, 1136
Fsp4HI GCNGC 5 cut(s) 75, 479, 877, 906, 1024
FspBI CTAG 3 cut(s) 260, 807, 1014
GluI GCNGC 5 cut(s) 75, 479, 877, 906, 1024
GsuI CTGGAG 1 cut(s) 489
HaeIII GGCC 2 cut(s) 29, 204
HapII CCGG 4 cut(s) 9, 20, 30, 42
HincII GTYRAC 3 cut(s) 6, 924, 1195
HindII GTYRAC 3 cut(s) 6, 924, 1195
HindIII AAGCTT 3 cut(s) 645, 1140, 1167
HinfI GANTC 5 cut(s) 82, 748, 826, 845, 1187
HpaII CCGG 4 cut(s) 9, 20, 30, 42
HphI GGTGA 1 cut(s) 1072
Hpy166II GTNNAC 6 cut(s) 6, 470, 501, 684, 924, 1195
Hpy188I TCNGA 6 cut(s) 112, 528, 592, 616, 1084, 1116
Hpy188III TCNNGA 4 cut(s) 191, 413, 506, 887
Hpy8I GTNNAC 6 cut(s) 6, 470, 501, 684, 924, 1195
HpyAV CCTTC 1 cut(s) 202
HpyCH4III ACNGT 2 cut(s) 861, 901
HpyCH4IV ACGT 2 cut(s) 686, 1086
HpyCH4V TGCA 7 cut(s) 138, 318, 470, 481, 713, 905, 935
HpyF10VI GCNNNNNNNGC 3 cut(s) 166, 467, 873
HpyF3I CTNAG 7 cut(s) 78, 86, 822, 840, 967, 993, 1100
HpySE526I ACGT 2 cut(s) 686, 1086
Kzo9I GATC 3 cut(s) 104, 400, 1111
LmnI GCTCC 1 cut(s) 488
Lsp1109I GCAGC 4 cut(s) 61, 465, 917, 1035
LweI GCATC 2 cut(s) 945, 1086
MaeI CTAG 3 cut(s) 260, 807, 1014
MaeII ACGT 2 cut(s) 686, 1086
MalI GATC 3 cut(s) 106, 402, 1113
MboI GATC 3 cut(s) 104, 400, 1111
MboII GAAGA 9 cut(s) 59, 99, 417, 745, 754, 757, 929, 1067, 1196
MfeI CAATTG 1 cut(s) 133
MflI RGATCY 1 cut(s) 104
MhlI GDGCHC 4 cut(s) 259, 472, 630, 709
MlyI GAGTC 1 cut(s) 854
MnlI CCTC 8 cut(s) 47, 49, 487, 502, 994, 1051, 1090, 1102
Mph1103I ATGCAT 1 cut(s) 320
MseI TTAA 5 cut(s) 333, 663, 767, 896, 974
MslI CAYNNNNRTG 1 cut(s) 940
MspCI CTTAAG 1 cut(s) 332
MspI CCGG 4 cut(s) 9, 20, 30, 42
MunI CAATTG 1 cut(s) 133
Mva1269I GAATGC 2 cut(s) 320, 1039
MwoI GCNNNNNNNGC 3 cut(s) 166, 467, 873
NdeI CATATG 1 cut(s) 474
NdeII GATC 3 cut(s) 104, 400, 1111
NlaIV GGNNCC 1 cut(s) 1078
NsiI ATGCAT 1 cut(s) 320
NspI RCATGY 1 cut(s) 142
NspV TTCGAA 1 cut(s) 375
PctI GAATGC 2 cut(s) 320, 1039
PfeI GAWTC 4 cut(s) 82, 748, 826, 1187
PkrI GCNGC 5 cut(s) 76, 480, 878, 907, 1025
PleI GAGTC 1 cut(s) 853
PpsI GAGTC 1 cut(s) 853
PpuMI RGGWCCY 1 cut(s) 1077
Psp5II RGGWCCY 1 cut(s) 1077
PspN4I GGNNCC 1 cut(s) 1078
PspPI GGNCC 1 cut(s) 1077
PspPPI RGGWCCY 1 cut(s) 1077
PsuI RGATCY 1 cut(s) 104
RsaI GTAC 1 cut(s) 559
RsaNI GTAC 1 cut(s) 558
RseI CAYNNNNRTG 1 cut(s) 940
SaqAI TTAA 5 cut(s) 333, 663, 767, 896, 974
SatI GCNGC 5 cut(s) 75, 479, 877, 906, 1024
Sau3AI GATC 3 cut(s) 104, 400, 1111
Sau96I GGNCC 1 cut(s) 1077
ScaI AGTACT 1 cut(s) 559
SchI GAGTC 1 cut(s) 854
SduI GDGCHC 4 cut(s) 259, 472, 630, 709
SfaNI GCATC 2 cut(s) 945, 1086
SfcI CTRYAG 1 cut(s) 1179
SfuI TTCGAA 1 cut(s) 375
SinI GGWCC 1 cut(s) 1077
SmiMI CAYNNNNRTG 1 cut(s) 940
SmlI CTYRAG 2 cut(s) 191, 332
SmoI CTYRAG 2 cut(s) 191, 332
SpeI ACTAGT 2 cut(s) 259, 806
SsiI CCGC 5 cut(s) 17, 244, 367, 755, 877
SspI AATATT 1 cut(s) 341
SspMI CTAG 3 cut(s) 260, 807, 1014
TaaI ACNGT 2 cut(s) 861, 901
TaiI ACGT 2 cut(s) 689, 1089
TaqI TCGA 3 cut(s) 375, 403, 848
TatI WGTACW 1 cut(s) 557
TauI GCSGC 1 cut(s) 879
TfiI GAWTC 4 cut(s) 82, 748, 826, 1187
Tru1I TTAA 5 cut(s) 333, 663, 767, 896, 974
Tru9I TTAA 5 cut(s) 333, 663, 767, 896, 974
TscAI CASTG 2 cut(s) 289, 997
TseI GCWGC 4 cut(s) 74, 478, 905, 1023
TspDTI ATGAA 9 cut(s) 89, 308, 335, 399, 536, 657, 818, 930, 954
TspRI CASTG 2 cut(s) 289, 997
Vha464I CTTAAG 1 cut(s) 332
VneI GTGCAC 1 cut(s) 468
VpaK11BI GGWCC 1 cut(s) 1077
XapI RAATTY 4 cut(s) 63, 113, 533, 543
XceI RCATGY 1 cut(s) 142
XmiI GTMKAC 1 cut(s) 500
XspI CTAG 3 cut(s) 260, 807, 1014
ZrmI AGTACT 1 cut(s) 559
Zsp2I ATGCAT 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.