FvH4_3g07131

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000325
Physical Location & Seq
Reverse (-)
4239943 .. 4241049
1107 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g07131.t1

Sequence Viewer

Length: 954 bp
ATGGATAATGCAGATTGTACAAACTTAGGCAATCAACCAACATATGATTCGAAAGACTTAAAAGGTGAAGAAGAGCAGTTCGAGCATTCTGAGCATTCTCATCATAATGAGGAGGCGATTGAAGATGTAATTCTTGGAAAAGAGTTTCTGGATGTTAAGAGTGCAAAGAAGTATTATATGAATTATGGTGGCAAAAATGGCTTCAATGTGAAGATAAGAAACAGTAGAAAAAACAGTGAGAATTTTGTGACATGGGTACATTATGCTTGTTCAAAAGAAGGTTTTCGTGATGAAAAGCAGCATACAAATGCATCTTATTCTCAACCAGTTTCCAGATGTGGTTGTGAAGCGCATATGATTATCCTATTGCAAAAAAATGGAAATTTCAAGGTTGTCTCATTTCAGAAAAGTCATAATCGTGCTTTGGTTGCTACTCCTATGAAGTATATGTTGAAGGTCAATAGAAGTATATCAAAGGCACAAAAGGCACATGCAGATGATGCTGAATATTCTGGGTTCTCCATGAAATCCACTGTGGATCTGATGAGTAGAGAAGTAGGAGGGCCAGAGAATCTTGGATTTACAAAGAATGATTACATGAATTACATACATAGAAAACGAATGTCTAAAATGGAAAAAGGAGATGCAAGTGCTATATTGCAGTACTTTCAAAAGATGCAATTTGAGAATTCGTCATATTTTTATTCAATTCAACTTGACGAGGATGACATGATCACAAACATATTTTGGGCAGATGCTCGATCGATAAATGATTATGGTCAATTTGGAGATGTGTTTTGTTTTGATATGATGTACCGAACAAATGAATATGACCAACCCTTTGCACCGTTTGTTAGGGTTAATTATCATAAGCAAACAACATTGTTTGGCGCAGCTTTGTTATATGATGAGACAATTGAATCTTTCAAGTGGTTATTTATGAGGAACCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

318

Amino Acids

36.97

Weight (kDa)

6.42

Isoelectric Point (pI)

46.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 57 - 143 4.9e-18 FAR1 DNA-binding domain
MULE PF10551 265 - 314 5.3e-10 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 546
AcsI RAATTY 3 cut(s) 241, 382, 688
AfaI GTAC 4 cut(s) 19, 258, 665, 815
AjuI GAANNNNNNNTTGG 2 cut(s) 31, 63
AluBI AGCT 1 cut(s) 896
AluI AGCT 1 cut(s) 896
Alw26I GTCTC 2 cut(s) 400, 905
AlwI GGATC 1 cut(s) 546
AoxI GGCC 1 cut(s) 563
ApeKI GCWGC 2 cut(s) 298, 893
ApoI RAATTY 3 cut(s) 241, 382, 688
ArsI GACNNNNNNTTYG 2 cut(s) 824, 856
Asp700I GAANNNNTTC 1 cut(s) 282
AspLEI GCGC 2 cut(s) 352, 893
AspS9I GGNCC 1 cut(s) 563
AsuHPI GGTGA 1 cut(s) 77
AsuII TTCGAA 1 cut(s) 50
BbvI GCAGC 2 cut(s) 310, 905
BclI TGATCA 1 cut(s) 732
BcoDI GTCTC 2 cut(s) 400, 905
BisI GCNGC 2 cut(s) 299, 894
BlsI GCNGC 2 cut(s) 300, 895
BmcAI AGTACT 1 cut(s) 665
BmgT120I GGNCC 1 cut(s) 563
BmiI GGNNCC 1 cut(s) 947
BmsI GCATC 5 cut(s) 320, 490, 634, 666, 745
Bpu14I TTCGAA 1 cut(s) 50
Bsa29I ATCGAT 1 cut(s) 764
Bse1I ACTGG 1 cut(s) 326
BseCI ATCGAT 1 cut(s) 764
BseGI GGATG 2 cut(s) 157, 730
BseMII CTCAG 1 cut(s) 81
BseNI ACTGG 1 cut(s) 326
BseRI GAGGAG 1 cut(s) 125
BseXI GCAGC 2 cut(s) 310, 905
Bsh1285I CGRYCG 1 cut(s) 764
BshFI GGCC 1 cut(s) 565
BshVI ATCGAT 1 cut(s) 764
BsiEI CGRYCG 1 cut(s) 764
BsmAI GTCTC 2 cut(s) 400, 905
BsmI GAATGC 2 cut(s) 85, 94
BsnI GGCC 1 cut(s) 565
Bsp119I TTCGAA 1 cut(s) 50
Bsp1407I TGTACA 1 cut(s) 17
Bsp143I GATC 3 cut(s) 538, 732, 761
BspANI GGCC 1 cut(s) 565
BspCNI CTCAG 1 cut(s) 82
BspDI ATCGAT 1 cut(s) 764
BspLI GGNNCC 1 cut(s) 947
BspPI GGATC 1 cut(s) 546
BspQI GCTCTTC 1 cut(s) 66
BspT104I TTCGAA 1 cut(s) 50
BsrGI TGTACA 1 cut(s) 17
BsrI ACTGG 1 cut(s) 326
BssMI GATC 3 cut(s) 538, 732, 761
Bst4CI ACNGT 5 cut(s) 224, 236, 535, 849, 950
Bst6I CTCTTC 1 cut(s) 66
BstAPI GCANNNNNTGC 1 cut(s) 500
BstAUI TGTACA 1 cut(s) 17
BstBI TTCGAA 1 cut(s) 50
BstDEI CTNAG 2 cut(s) 25, 90
BstF5I GGATG 2 cut(s) 157, 730
BstHHI GCGC 2 cut(s) 352, 893
BstKTI GATC 3 cut(s) 541, 735, 764
BstMAI GTCTC 2 cut(s) 400, 905
BstMBI GATC 3 cut(s) 538, 732, 761
BstMCI CGRYCG 1 cut(s) 764
BstMWI GCNNNNNNNGC 6 cut(s) 82, 91, 198, 428, 485, 500
BstNSI RCATGY 1 cut(s) 494
BstV1I GCAGC 2 cut(s) 310, 905
BstX2I RGATCY 1 cut(s) 538
BstYI RGATCY 1 cut(s) 538
Bsu15I ATCGAT 1 cut(s) 764
BsuRI GGCC 1 cut(s) 565
BsuTUI ATCGAT 1 cut(s) 764
BtsCI GGATG 2 cut(s) 157, 730
BtsIMutI CAGTG 2 cut(s) 241, 531
CfoI GCGC 2 cut(s) 352, 893
Cfr13I GGNCC 1 cut(s) 563
ClaI ATCGAT 1 cut(s) 764
Csp6I GTAC 4 cut(s) 18, 257, 664, 814
CviAII CATG 5 cut(s) 252, 491, 523, 598, 730
CviJI RGCY 3 cut(s) 201, 565, 896
CviKI_1 RGCY 3 cut(s) 201, 565, 896
CviQI GTAC 4 cut(s) 18, 257, 664, 814
DdeI CTNAG 2 cut(s) 25, 90
DpnI GATC 3 cut(s) 540, 734, 763
DpnII GATC 3 cut(s) 538, 732, 761
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
EcoRI GAATTC 1 cut(s) 688
EcoT22I ATGCAT 1 cut(s) 313
FaeI CATG 5 cut(s) 255, 494, 526, 601, 733
FatI CATG 5 cut(s) 251, 490, 522, 597, 729
FauNDI CATATG 2 cut(s) 43, 354
FbaI TGATCA 1 cut(s) 732
Fnu4HI GCNGC 2 cut(s) 299, 894
FokI GGATG 2 cut(s) 164, 737
Fsp4HI GCNGC 2 cut(s) 299, 894
GlaI GCGC 2 cut(s) 351, 892
GluI GCNGC 2 cut(s) 299, 894
HaeIII GGCC 1 cut(s) 565
HhaI GCGC 2 cut(s) 352, 893
Hin1II CATG 5 cut(s) 255, 494, 526, 601, 733
Hin6I GCGC 2 cut(s) 350, 891
HinP1I GCGC 2 cut(s) 350, 891
HinfI GANTC 3 cut(s) 47, 571, 920
HphI GGTGA 1 cut(s) 77
Hpy188I TCNGA 3 cut(s) 91, 405, 543
Hpy188III TCNNGA 3 cut(s) 149, 287, 333
HpyAV CCTTC 2 cut(s) 272, 448
HpyCH4III ACNGT 5 cut(s) 224, 236, 535, 849, 950
HpyCH4V TGCA 9 cut(s) 11, 164, 311, 370, 494, 647, 661, 679, 845
HpyF10VI GCNNNNNNNGC 6 cut(s) 82, 91, 198, 428, 485, 500
HpyF3I CTNAG 2 cut(s) 25, 90
Hsp92II CATG 5 cut(s) 255, 494, 526, 601, 733
HspAI GCGC 2 cut(s) 350, 891
Ksp22I TGATCA 1 cut(s) 732
Kzo9I GATC 3 cut(s) 538, 732, 761
LguI GCTCTTC 1 cut(s) 66
LpnPI CCDG 5 cut(s) 134, 339, 346, 498, 579
Lsp1109I GCAGC 2 cut(s) 310, 905
LweI GCATC 5 cut(s) 320, 490, 634, 666, 745
MaeIII GTNAC 1 cut(s) 247
MalI GATC 3 cut(s) 540, 734, 763
MboI GATC 3 cut(s) 538, 732, 761
MboII GAAGA 4 cut(s) 80, 83, 134, 223
MfeI CAATTG 1 cut(s) 915
MflI RGATCY 1 cut(s) 538
MnlI CCTC 5 cut(s) 103, 106, 554, 715, 936
Mph1103I ATGCAT 1 cut(s) 313
MroXI GAANNNNTTC 1 cut(s) 282
MseI TTAA 3 cut(s) 59, 156, 861
MslI CAYNNNNRTG 4 cut(s) 105, 306, 417, 495
MunI CAATTG 1 cut(s) 915
Mva1269I GAATGC 2 cut(s) 85, 94
MwoI GCNNNNNNNGC 6 cut(s) 82, 91, 198, 428, 485, 500
NdeI CATATG 2 cut(s) 43, 354
NdeII GATC 3 cut(s) 538, 732, 761
NlaIII CATG 5 cut(s) 255, 494, 526, 601, 733
NlaIV GGNNCC 1 cut(s) 947
NmuCI GTSAC 1 cut(s) 247
NsiI ATGCAT 1 cut(s) 313
NspI RCATGY 1 cut(s) 494
NspV TTCGAA 1 cut(s) 50
PciSI GCTCTTC 1 cut(s) 66
PctI GAATGC 2 cut(s) 85, 94
PdmI GAANNNNTTC 1 cut(s) 282
PfeI GAWTC 3 cut(s) 47, 571, 920
PkrI GCNGC 2 cut(s) 300, 895
Ple19I CGATCG 1 cut(s) 764
PspN4I GGNNCC 1 cut(s) 947
PspPI GGNCC 1 cut(s) 563
PsuI RGATCY 1 cut(s) 538
PvuI CGATCG 1 cut(s) 764
RsaI GTAC 4 cut(s) 19, 258, 665, 815
RsaNI GTAC 4 cut(s) 18, 257, 664, 814
RseI CAYNNNNRTG 4 cut(s) 105, 306, 417, 495
SapI GCTCTTC 1 cut(s) 66
SaqAI TTAA 3 cut(s) 59, 156, 861
SatI GCNGC 2 cut(s) 299, 894
Sau3AI GATC 3 cut(s) 538, 732, 761
Sau96I GGNCC 1 cut(s) 563
ScaI AGTACT 1 cut(s) 665
SetI ASST 5 cut(s) 67, 283, 393, 459, 898
SfaNI GCATC 5 cut(s) 320, 490, 634, 666, 745
SfuI TTCGAA 1 cut(s) 50
SmiMI CAYNNNNRTG 4 cut(s) 105, 306, 417, 495
SspI AATATT 1 cut(s) 509
TaaI ACNGT 5 cut(s) 224, 236, 535, 849, 950
TaqI TCGA 4 cut(s) 50, 81, 760, 764
TatI WGTACW 2 cut(s) 17, 663
TfiI GAWTC 3 cut(s) 47, 571, 920
Tru1I TTAA 3 cut(s) 59, 156, 861
Tru9I TTAA 3 cut(s) 59, 156, 861
TscAI CASTG 2 cut(s) 241, 538
TseFI GTSAC 1 cut(s) 247
TseI GCWGC 2 cut(s) 298, 893
Tsp45I GTSAC 1 cut(s) 247
TspDTI ATGAA 6 cut(s) 194, 306, 455, 539, 614, 840
TspRI CASTG 2 cut(s) 241, 538
XapI RAATTY 3 cut(s) 241, 382, 688
XceI RCATGY 1 cut(s) 494
XmnI GAANNNNTTC 1 cut(s) 282
ZrmI AGTACT 1 cut(s) 665
Zsp2I ATGCAT 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.