Rh1AG183500

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000325
Physical Location & Seq
Forward (+)
34883070 .. 34890663
7594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG183500.1

Sequence Viewer

Length: 510 bp
ATGCTTGATTTTGCAACTCAAGTTACAAAGAATATAGTATGTATAAATAATGAGCTGTTAAGTGGTAGAGAAGTTGCTTTTCCAGATGAGGATGAATTCGGTTTGCAAGGTTATGACGAGTTCAGTTTGCTGGGTGAGAATGGAATTGATTTGCAAGGTGAGGAACAAGATGATTTAGTAAGTGAGGAAGAAGATGATTTAGTAAGTGAGGATGAAGTTGATGTGCAAACTGAGGAGACTTTTCAATGTAATGATTCTTCTTTAAGTTCAAATGAAGACAAAGAGAAGAAAGAAGAACTATATATCGGAATGGAGTTTAGTTCTGATGAGAGCGCGTATAAAGCTTATGCTAAATATGGAGGAAAATCTGGTTTCAATGTGAGAAAACAACGAAAGAAGAGAAACAACAAGGGTTTGGTTGTAAGGAATCTGTATCCAGACCAAGCATATATATCGGTGATTGTCTCCATTACCCACCGCCTGCTTTGCAAAGATTCAGCAGGCAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

169

Amino Acids

19.05

Weight (kDa)

4.31

Isoelectric Point (pI)

45.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 335
AciI CCGC 1 cut(s) 478
AcsI RAATTY 1 cut(s) 95
AgsI TTSAA 3 cut(s) 245, 270, 376
AluBI AGCT 2 cut(s) 55, 344
AluI AGCT 2 cut(s) 55, 344
Alw26I GTCTC 2 cut(s) 230, 469
ApoI RAATTY 1 cut(s) 95
AspLEI GCGC 1 cut(s) 335
AsuHPI GGTGA 3 cut(s) 146, 170, 469
BarI GAAGNNNNNNTAC 2 cut(s) 241, 273
BbsI GAAGAC 1 cut(s) 282
BcgI CGANNNNNNTGC 2 cut(s) 435, 469
BciVI GTATCC 1 cut(s) 444
BcoDI GTCTC 2 cut(s) 230, 469
BfuI GTATCC 1 cut(s) 444
BpiI GAAGAC 1 cut(s) 282
BseGI GGATG 2 cut(s) 97, 217
BseMII CTCAG 1 cut(s) 222
BseRI GAGGAG 1 cut(s) 248
BseYI CCCAGC 1 cut(s) 130
Bsh1236I CGCG 1 cut(s) 335
BsmAI GTCTC 2 cut(s) 230, 469
BspACI CCGC 1 cut(s) 478
BspCNI CTCAG 1 cut(s) 223
BspFNI CGCG 1 cut(s) 335
Bst6I CTCTTC 1 cut(s) 392
BstC8I GCNNGC 2 cut(s) 482, 502
BstDEI CTNAG 1 cut(s) 231
BstF5I GGATG 2 cut(s) 97, 217
BstFNI CGCG 1 cut(s) 335
BstHHI GCGC 1 cut(s) 335
BstMAI GTCTC 2 cut(s) 230, 469
BstMWI GCNNNNNNNGC 2 cut(s) 341, 486
BstUI CGCG 1 cut(s) 335
BstV2I GAAGAC 1 cut(s) 282
BsuI GTATCC 1 cut(s) 444
BtsCI GGATG 2 cut(s) 97, 217
Cac8I GCNNGC 2 cut(s) 482, 502
CfoI GCGC 1 cut(s) 335
CviJI RGCY 2 cut(s) 55, 344
CviKI_1 RGCY 2 cut(s) 55, 344
DdeI CTNAG 1 cut(s) 231
Eam1104I CTCTTC 1 cut(s) 392
EarI CTCTTC 1 cut(s) 392
EcoRI GAATTC 1 cut(s) 95
FokI GGATG 2 cut(s) 104, 224
GlaI GCGC 1 cut(s) 334
GsaI CCCAGC 1 cut(s) 134
HhaI GCGC 1 cut(s) 335
Hin6I GCGC 1 cut(s) 333
HinP1I GCGC 1 cut(s) 333
HindIII AAGCTT 1 cut(s) 342
HinfI GANTC 3 cut(s) 254, 427, 494
HphI GGTGA 3 cut(s) 146, 170, 469
Hpy188I TCNGA 2 cut(s) 308, 325
Hpy188III TCNNGA 2 cut(s) 83, 437
HpyCH4V TGCA 5 cut(s) 14, 106, 154, 226, 489
HpyF10VI GCNNNNNNNGC 2 cut(s) 341, 486
HpyF3I CTNAG 1 cut(s) 231
HspAI GCGC 1 cut(s) 333
LpnPI CCDG 6 cut(s) 96, 116, 354, 450, 486, 494
MaeIII GTNAC 1 cut(s) 22
MboII GAAGA 7 cut(s) 200, 203, 249, 287, 298, 305, 409
MluCI AATT 2 cut(s) 95, 144
MnlI CCTC 6 cut(s) 82, 154, 178, 202, 226, 353
MseI TTAA 2 cut(s) 59, 263
MvnI CGCG 1 cut(s) 335
MwoI GCNNNNNNNGC 2 cut(s) 341, 486
PfeI GAWTC 3 cut(s) 254, 427, 494
PspFI CCCAGC 1 cut(s) 130
SaqAI TTAA 2 cut(s) 59, 263
SetI ASST 4 cut(s) 57, 112, 160, 346
SmlI CTYRAG 1 cut(s) 18
SmoI CTYRAG 1 cut(s) 18
Sse9I AATT 2 cut(s) 95, 144
SsiI CCGC 1 cut(s) 478
TasI AATT 2 cut(s) 95, 144
TfiI GAWTC 3 cut(s) 254, 427, 494
Tru1I TTAA 2 cut(s) 59, 263
Tru9I TTAA 2 cut(s) 59, 263
TspDTI ATGAA 3 cut(s) 108, 228, 288
XapI RAATTY 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.