FvH4_1g24391

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000325
Physical Location & Seq
Forward (+)
16258259 .. 16259524
1266 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g24391.t1

Sequence Viewer

Length: 594 bp
ATGCCAAAGGTGTCTTGTCCAAATCCGAATGATGATGATCCAAAGGCAAAAATAGCAAGGCGTTACAGAGACTTGGCTCGACTACATACTGAACTTGCAACAATTGCTGCAGAATCTAATGAAGCCTATGAAATTGCTTCAATGGCCCTTCACAAGACATTAGCCGATGTTAAGGCATCTTTAAAGAAGAAGACCAATCAAGAAGTACCTCAAGTTACCTCACCGATCAATAATAATGCACCTGAGGTTGTTTCTGATGATTTTGATGAGCATAGGGTGAAAGGAATCAAGATTAAAGAAAGAATTGTCCGTAAGGAGGATTCTATTAGGCCAAAGAATGCTCTAGAAAAGCTCTTAAGAAACAAAAGACATAGGAAGGAAATAGATACTTCATCTAGACACCACAGGGAACCAGAATTAGATCGTTCAGATGTGACCTCCACATGTGTTCCTCCTACACAAGTTCAACTCCATTCGACACAAGAAATGGAACGGCTAACACATCCTTCACAAAATCTGCTAAATGAGCAGAACTTAGGAGCCTCCAGTGTTGGAATATATTACCAACAAGGTTCTAGACCGAATTATCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

198

Amino Acids

22.45

Weight (kDa)

9.02

Isoelectric Point (pI)

42.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 32
AfaI GTAC 1 cut(s) 207
AfiI CCNNNNNNNGG 1 cut(s) 316
AflII CTTAAG 1 cut(s) 355
AflIII ACRYGT 1 cut(s) 443
AgsI TTSAA 2 cut(s) 141, 467
AluBI AGCT 1 cut(s) 352
AluI AGCT 1 cut(s) 352
Alw26I GTCTC 1 cut(s) 63
AlwI GGATC 1 cut(s) 32
AoxI GGCC 2 cut(s) 144, 329
ApeKI GCWGC 1 cut(s) 107
AspS9I GGNCC 1 cut(s) 145
AsuHPI GGTGA 2 cut(s) 213, 289
AxyI CCTNAGG 1 cut(s) 243
BbsI GAAGAC 1 cut(s) 197
BbvI GCAGC 1 cut(s) 94
BceAI ACGGC 1 cut(s) 509
BcoDI GTCTC 1 cut(s) 63
BfaI CTAG 3 cut(s) 344, 396, 576
BfmI CTRYAG 1 cut(s) 108
BfrI CTTAAG 1 cut(s) 355
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 145
BmiI GGNNCC 2 cut(s) 411, 541
BmsI GCATC 1 cut(s) 185
BpiI GAAGAC 1 cut(s) 197
BpmI CTGGAG 1 cut(s) 529
BpuEI CTTGAG 1 cut(s) 195
BsaBI GATNNNNATC 1 cut(s) 36
Bsc4I CCNNNNNNNGG 1 cut(s) 316
Bse1I ACTGG 1 cut(s) 546
Bse21I CCTNAGG 1 cut(s) 243
Bse8I GATNNNNATC 1 cut(s) 36
BseGI GGATG 1 cut(s) 502
BseJI GATNNNNATC 1 cut(s) 36
BseLI CCNNNNNNNGG 1 cut(s) 316
BseMII CTCAG 1 cut(s) 234
BseNI ACTGG 1 cut(s) 546
BseXI GCAGC 1 cut(s) 94
BshFI GGCC 2 cut(s) 146, 331
BslI CCNNNNNNNGG 1 cut(s) 316
BsmAI GTCTC 1 cut(s) 63
BsmI GAATGC 1 cut(s) 343
BsnI GGCC 2 cut(s) 146, 331
Bsp143I GATC 3 cut(s) 37, 225, 421
BspANI GGCC 2 cut(s) 146, 331
BspCNI CTCAG 1 cut(s) 235
BspLI GGNNCC 2 cut(s) 411, 541
BspMAI CTGCAG 1 cut(s) 112
BspPI GGATC 1 cut(s) 32
BspTI CTTAAG 1 cut(s) 355
BsrI ACTGG 1 cut(s) 546
BssMI GATC 3 cut(s) 37, 225, 421
BstAFI CTTAAG 1 cut(s) 355
BstAPI GCANNNNNTGC 1 cut(s) 104
BstDEI CTNAG 2 cut(s) 243, 535
BstF5I GGATG 1 cut(s) 502
BstKTI GATC 3 cut(s) 40, 228, 424
BstMAI GTCTC 1 cut(s) 63
BstMBI GATC 3 cut(s) 37, 225, 421
BstMWI GCNNNNNNNGC 4 cut(s) 53, 104, 143, 526
BstNSI RCATGY 1 cut(s) 447
BstSFI CTRYAG 1 cut(s) 108
BstV1I GCAGC 1 cut(s) 94
BstV2I GAAGAC 1 cut(s) 197
Bsu36I CCTNAGG 1 cut(s) 243
BsuRI GGCC 2 cut(s) 146, 331
BtsCI GGATG 1 cut(s) 502
BtsIMutI CAGTG 1 cut(s) 553
Cfr13I GGNCC 1 cut(s) 145
Csp6I GTAC 1 cut(s) 206
CviAII CATG 1 cut(s) 444
CviJI RGCY 8 cut(s) 77, 125, 146, 164, 331, 352, 496, 542
CviKI_1 RGCY 8 cut(s) 77, 125, 146, 164, 331, 352, 496, 542
CviQI GTAC 1 cut(s) 206
DdeI CTNAG 2 cut(s) 243, 535
DpnI GATC 3 cut(s) 39, 227, 423
DpnII GATC 3 cut(s) 37, 225, 421
DraI TTTAAA 1 cut(s) 183
Eco81I CCTNAGG 1 cut(s) 243
FaeI CATG 1 cut(s) 447
FaiI YATR 6 cut(s) 87, 129, 273, 372, 445, 559
FatI CATG 1 cut(s) 443
Fnu4HI GCNGC 1 cut(s) 108
FokI GGATG 1 cut(s) 489
Fsp4HI GCNGC 1 cut(s) 108
FspBI CTAG 3 cut(s) 344, 396, 576
GluI GCNGC 1 cut(s) 108
GsuI CTGGAG 1 cut(s) 529
HaeIII GGCC 2 cut(s) 146, 331
Hin1II CATG 1 cut(s) 447
HinfI GANTC 3 cut(s) 113, 285, 320
HphI GGTGA 2 cut(s) 213, 289
Hpy188I TCNGA 3 cut(s) 27, 256, 430
Hpy188III TCNNGA 5 cut(s) 200, 289, 344, 396, 576
HpyAV CCTTC 3 cut(s) 158, 370, 516
HpyCH4V TGCA 3 cut(s) 98, 110, 239
HpyF10VI GCNNNNNNNGC 4 cut(s) 53, 104, 143, 526
HpyF3I CTNAG 2 cut(s) 243, 535
Hsp92II CATG 1 cut(s) 447
Kzo9I GATC 3 cut(s) 37, 225, 421
LmnI GCTCC 1 cut(s) 539
LpnPI CCDG 4 cut(s) 255, 391, 426, 559
Lsp1109I GCAGC 1 cut(s) 94
LweI GCATC 1 cut(s) 185
MaeI CTAG 3 cut(s) 344, 396, 576
MaeIII GTNAC 3 cut(s) 62, 214, 433
MalI GATC 3 cut(s) 39, 227, 423
MboI GATC 3 cut(s) 37, 225, 421
MboII GAAGA 2 cut(s) 199, 202
MfeI CAATTG 1 cut(s) 102
MluCI AATT 5 cut(s) 102, 132, 303, 416, 583
MmeI TCCRAC 1 cut(s) 532
MnlI CCTC 7 cut(s) 219, 229, 238, 310, 448, 462, 553
MseI TTAA 4 cut(s) 171, 182, 294, 356
MspCI CTTAAG 1 cut(s) 355
MunI CAATTG 1 cut(s) 102
Mva1269I GAATGC 1 cut(s) 343
MwoI GCNNNNNNNGC 4 cut(s) 53, 104, 143, 526
NdeII GATC 3 cut(s) 37, 225, 421
NlaIII CATG 1 cut(s) 447
NlaIV GGNNCC 2 cut(s) 411, 541
NmuCI GTSAC 1 cut(s) 433
NspI RCATGY 1 cut(s) 447
PciI ACATGT 1 cut(s) 443
PctI GAATGC 1 cut(s) 343
PfeI GAWTC 3 cut(s) 113, 285, 320
PkrI GCNGC 1 cut(s) 109
PscI ACATGT 1 cut(s) 443
PspN4I GGNNCC 2 cut(s) 411, 541
PspPI GGNCC 1 cut(s) 145
PstI CTGCAG 1 cut(s) 112
RsaI GTAC 1 cut(s) 207
RsaNI GTAC 1 cut(s) 206
SaqAI TTAA 4 cut(s) 171, 182, 294, 356
SatI GCNGC 1 cut(s) 108
Sau3AI GATC 3 cut(s) 37, 225, 421
Sau96I GGNCC 1 cut(s) 145
SetI ASST 8 cut(s) 12, 211, 221, 244, 249, 354, 440, 574
SfaNI GCATC 1 cut(s) 185
SfcI CTRYAG 1 cut(s) 108
SmlI CTYRAG 2 cut(s) 210, 355
SmoI CTYRAG 2 cut(s) 210, 355
Sse9I AATT 5 cut(s) 102, 132, 303, 416, 583
SspMI CTAG 3 cut(s) 344, 396, 576
TaqI TCGA 2 cut(s) 79, 476
TasI AATT 5 cut(s) 102, 132, 303, 416, 583
TfiI GAWTC 3 cut(s) 113, 285, 320
Tru1I TTAA 4 cut(s) 171, 182, 294, 356
Tru9I TTAA 4 cut(s) 171, 182, 294, 356
TscAI CASTG 1 cut(s) 553
TseFI GTSAC 1 cut(s) 433
TseI GCWGC 1 cut(s) 107
Tsp45I GTSAC 1 cut(s) 433
TspDTI ATGAA 3 cut(s) 135, 144, 381
TspGWI ACGGA 1 cut(s) 299
TspRI CASTG 1 cut(s) 553
Vha464I CTTAAG 1 cut(s) 355
XbaI TCTAGA 3 cut(s) 343, 395, 575
XceI RCATGY 1 cut(s) 447
XspI CTAG 3 cut(s) 344, 396, 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.