Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000325

Physical Location & Seq

Genomic Coordinates Forward (+)

10084385 .. 10085859

Gene Structure 1475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17095

Sequence Viewer

CDS Protein Promoter (2k)

Length: 138 bp

ATGCAGAAGCAAACTTTGGTGACAGGTTTAGTATTTCACCCTCATAGGGATCGTAAGATTGGATTAGGAATCAAAGATATAAAGGCTATGCTCTTGGGGCTCAGGTTTGGAGCTTTTTGGTGCATGCAAATTAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000418 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010495 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0030422 GO:0030880 GO:0031047 GO:0031050 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:1901360 GO:1901698 GO:1901699 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3223 RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_5

Protein Analysis

45

Amino Acids

5.23

Weight (kDa)

11.01

Isoelectric Point (pI)

7.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000325)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica	MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica	Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis	pycom01g20780 pycom17g19620
rosa_chinensis	RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata	RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora	Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii	Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa	Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha	Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana	Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	57
AfiI	CCNNNNNNNGG	1 cut(s)	46
AjuI	GAANNNNNNNTTGG	1 cut(s)	31
AluBI	AGCT	1 cut(s)	113
AluI	AGCT	1 cut(s)	113
AlwI	GGATC	1 cut(s)	57
AsuHPI	GGTGA	2 cut(s)	29, 31
BanII	GRGCYC	1 cut(s)	102
Bpu10I	CCTNAGC	1 cut(s)	101
Bsc4I	CCNNNNNNNGG	1 cut(s)	46
BseLI	CCNNNNNNNGG	1 cut(s)	46
BseMII	CTCAG	1 cut(s)	115
BslI	CCNNNNNNNGG	1 cut(s)	46
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp143I	GATC	1 cut(s)	49
BspCNI	CTCAG	1 cut(s)	114
BspPI	GGATC	1 cut(s)	57
BssMI	GATC	1 cut(s)	49
BstC8I	GCNNGC	1 cut(s)	125
BstDEI	CTNAG	1 cut(s)	101
BstKTI	GATC	1 cut(s)	52
BstMBI	GATC	1 cut(s)	49
BstMWI	GCNNNNNNNGC	1 cut(s)	97
BstNSI	RCATGY	1 cut(s)	127
Cac8I	GCNNGC	1 cut(s)	125
CviAII	CATG	1 cut(s)	124
CviJI	RGCY	3 cut(s)	86, 100, 113
CviKI_1	RGCY	3 cut(s)	86, 100, 113
DdeI	CTNAG	1 cut(s)	101
DpnI	GATC	1 cut(s)	51
DpnII	GATC	1 cut(s)	49
Eco24I	GRGCYC	1 cut(s)	102
EcoT38I	GRGCYC	1 cut(s)	102
FaeI	CATG	1 cut(s)	127
FaiI	YATR	4 cut(s)	45, 80, 89, 125
FatI	CATG	1 cut(s)	123
FriOI	GRGCYC	1 cut(s)	102
Hin1II	CATG	1 cut(s)	127
HinfI	GANTC	1 cut(s)	69
HphI	GGTGA	2 cut(s)	29, 31
HpyCH4V	TGCA	3 cut(s)	4, 123, 127
HpyF10VI	GCNNNNNNNGC	1 cut(s)	97
HpyF3I	CTNAG	1 cut(s)	101
Hsp92II	CATG	1 cut(s)	127
Kzo9I	GATC	1 cut(s)	49
LmnI	GCTCC	1 cut(s)	110
LpnPI	CCDG	2 cut(s)	9, 88
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	1 cut(s)	51
MboI	GATC	1 cut(s)	49
MhlI	GDGCHC	1 cut(s)	102
MluCI	AATT	1 cut(s)	129
MnlI	CCTC	1 cut(s)	51
MwoI	GCNNNNNNNGC	1 cut(s)	97
NdeII	GATC	1 cut(s)	49
NlaIII	CATG	1 cut(s)	127
NmuCI	GTSAC	1 cut(s)	19
NspI	RCATGY	1 cut(s)	127
PaeI	GCATGC	1 cut(s)	127
PfeI	GAWTC	1 cut(s)	69
Sau3AI	GATC	1 cut(s)	49
SduI	GDGCHC	1 cut(s)	102
SetI	ASST	4 cut(s)	28, 107, 115, 137
SgeI	CNNG	3 cut(s)	36, 106, 115
SphI	GCATGC	1 cut(s)	127
Sse9I	AATT	1 cut(s)	129
TasI	AATT	1 cut(s)	129
TfiI	GAWTC	1 cut(s)	69
TseFI	GTSAC	1 cut(s)	19
Tsp45I	GTSAC	1 cut(s)	19
XceI	RCATGY	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.