Rmu_ssc0000400.1_g000103

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000400.1
OG0000325
Physical Location & Seq
Reverse (-)
391383 .. 391796
414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000400.1_g000103.1.cds

Sequence Viewer

Length: 414 bp
atgcgtcaagaattgattcttgtagttggtatggagtttgaaacagaagatgatgcacatgcttgttacaatcgatatacatatagatttggtttcagtactagattaattaaagcacataaatactccagtggcctattgagggacaggctctttgtttgctcagccgaaggtacacgtggaagagacaagcgaaatctatatgtcaaatctcatcgtgctgagacaaggtttggttgtagagctaagatgaaaattaggtatgatctgttatccagaaagttcagtgttgtggaatttgttgctgatcatacccatgtgacttcaactcctagtaaggcccatctttttaggtctcataggaaaatctctcttgcacaaattgttcaagctgatatggcttacgattcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

137

Amino Acids

16.0

Weight (kDa)

9.81

Isoelectric Point (pI)

28.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 296
AcvI CACGTG 1 cut(s) 179
AfaI GTAC 2 cut(s) 100, 175
AfiI CCNNNNNNNGG 1 cut(s) 142
AflIII ACRYGT 1 cut(s) 176
AgsI TTSAA 3 cut(s) 41, 327, 389
AluBI AGCT 2 cut(s) 245, 392
AluI AGCT 2 cut(s) 245, 392
Alw26I GTCTC 3 cut(s) 180, 218, 360
AoxI GGCC 2 cut(s) 133, 339
ApoI RAATTY 1 cut(s) 296
ArsI GACNNNNNNTTYG 2 cut(s) 137, 169
AseI ATTAAT 1 cut(s) 107
Asp700I GAANNNNTTC 1 cut(s) 15
AspS9I GGNCC 1 cut(s) 340
BbrPI CACGTG 1 cut(s) 179
BccI CCATC 1 cut(s) 351
BclI TGATCA 1 cut(s) 307
BcoDI GTCTC 3 cut(s) 180, 218, 360
BfaI CTAG 2 cut(s) 102, 333
BlpI GCTNAGC 1 cut(s) 163
BmcAI AGTACT 1 cut(s) 100
BmgT120I GGNCC 1 cut(s) 340
BmsI GCATC 1 cut(s) 43
BpmI CTGGAG 1 cut(s) 112
Bpu1102I GCTNAGC 1 cut(s) 163
Bsa29I ATCGAT 1 cut(s) 73
BsaAI YACGTR 1 cut(s) 179
BsaI GGTCTC 1 cut(s) 360
BsaXI ACNNNNNCTCC 2 cut(s) 313, 343
Bsc4I CCNNNNNNNGG 1 cut(s) 142
Bse1I ACTGG 1 cut(s) 129
BseCI ATCGAT 1 cut(s) 73
BseLI CCNNNNNNNGG 1 cut(s) 142
BseMII CTCAG 2 cut(s) 177, 213
BseNI ACTGG 1 cut(s) 129
BshFI GGCC 2 cut(s) 135, 341
BshVI ATCGAT 1 cut(s) 73
BslFI GGGAC 1 cut(s) 158
BslI CCNNNNNNNGG 1 cut(s) 142
BsmAI GTCTC 3 cut(s) 180, 218, 360
BsmFI GGGAC 1 cut(s) 158
BsnI GGCC 2 cut(s) 135, 341
Bso31I GGTCTC 1 cut(s) 360
Bsp143I GATC 2 cut(s) 265, 307
Bsp1720I GCTNAGC 1 cut(s) 163
BspANI GGCC 2 cut(s) 135, 341
BspCNI CTCAG 2 cut(s) 176, 214
BspDI ATCGAT 1 cut(s) 73
BspHI TCATGA 1 cut(s) 410
BspTNI GGTCTC 1 cut(s) 360
BsrI ACTGG 1 cut(s) 129
BssMI GATC 2 cut(s) 265, 307
Bst6I CTCTTC 1 cut(s) 178
BstBAI YACGTR 1 cut(s) 179
BstDEI CTNAG 3 cut(s) 163, 222, 246
BstKTI GATC 2 cut(s) 268, 310
BstMAI GTCTC 3 cut(s) 180, 218, 360
BstMBI GATC 2 cut(s) 265, 307
BstMWI GCNNNNNNNGC 1 cut(s) 398
BstNSI RCATGY 1 cut(s) 62
Bsu15I ATCGAT 1 cut(s) 73
BsuRI GGCC 2 cut(s) 135, 341
BsuTUI ATCGAT 1 cut(s) 73
BtsIMutI CAGTG 2 cut(s) 136, 292
CciI TCATGA 1 cut(s) 410
Cfr13I GGNCC 1 cut(s) 340
ClaI ATCGAT 1 cut(s) 73
Csp6I GTAC 2 cut(s) 99, 174
CviAII CATG 3 cut(s) 59, 317, 411
CviJI RGCY 7 cut(s) 135, 151, 167, 245, 341, 392, 401
CviKI_1 RGCY 7 cut(s) 135, 151, 167, 245, 341, 392, 401
CviQI GTAC 2 cut(s) 99, 174
DdeI CTNAG 3 cut(s) 163, 222, 246
DpnI GATC 2 cut(s) 267, 309
DpnII GATC 2 cut(s) 265, 307
Eam1104I CTCTTC 1 cut(s) 178
EarI CTCTTC 1 cut(s) 178
Eco31I GGTCTC 1 cut(s) 360
Eco72I CACGTG 1 cut(s) 179
FaeI CATG 3 cut(s) 62, 320, 414
FaqI GGGAC 1 cut(s) 158
FatI CATG 3 cut(s) 58, 316, 410
FbaI TGATCA 1 cut(s) 307
FspBI CTAG 2 cut(s) 102, 333
GsuI CTGGAG 1 cut(s) 112
HaeIII GGCC 2 cut(s) 135, 341
Hin1II CATG 3 cut(s) 62, 320, 414
HinfI GANTC 2 cut(s) 16, 407
Hpy166II GTNNAC 1 cut(s) 176
Hpy188III TCNNGA 3 cut(s) 8, 276, 411
Hpy8I GTNNAC 1 cut(s) 176
HpyAV CCTTC 1 cut(s) 164
HpyCH4IV ACGT 1 cut(s) 178
HpyCH4V TGCA 2 cut(s) 56, 377
HpyF10VI GCNNNNNNNGC 1 cut(s) 398
HpyF3I CTNAG 3 cut(s) 163, 222, 246
HpySE526I ACGT 1 cut(s) 178
Hsp92II CATG 3 cut(s) 62, 320, 414
Ksp22I TGATCA 1 cut(s) 307
Kzo9I GATC 2 cut(s) 265, 307
LpnPI CCDG 3 cut(s) 133, 142, 289
LweI GCATC 1 cut(s) 43
MaeI CTAG 2 cut(s) 102, 333
MaeII ACGT 1 cut(s) 178
MaeIII GTNAC 2 cut(s) 65, 319
MalI GATC 2 cut(s) 267, 309
MboI GATC 2 cut(s) 265, 307
MboII GAAGA 2 cut(s) 59, 195
MluCI AATT 5 cut(s) 11, 108, 255, 296, 381
MnlI CCTC 1 cut(s) 135
MroXI GAANNNNTTC 1 cut(s) 15
MseI TTAA 2 cut(s) 107, 111
MslI CAYNNNNRTG 1 cut(s) 315
MwoI GCNNNNNNNGC 1 cut(s) 398
NdeII GATC 2 cut(s) 265, 307
NlaIII CATG 3 cut(s) 62, 320, 414
NmuCI GTSAC 1 cut(s) 319
NspI RCATGY 1 cut(s) 62
PacI TTAATTAA 1 cut(s) 111
PagI TCATGA 1 cut(s) 410
PdmI GAANNNNTTC 1 cut(s) 15
PfeI GAWTC 2 cut(s) 16, 407
PmaCI CACGTG 1 cut(s) 179
PmlI CACGTG 1 cut(s) 179
Ppu21I YACGTR 1 cut(s) 179
PshBI ATTAAT 1 cut(s) 107
PspCI CACGTG 1 cut(s) 179
PspPI GGNCC 1 cut(s) 340
RsaI GTAC 2 cut(s) 100, 175
RsaNI GTAC 2 cut(s) 99, 174
RseI CAYNNNNRTG 1 cut(s) 315
SaqAI TTAA 2 cut(s) 107, 111
Sau3AI GATC 2 cut(s) 265, 307
Sau96I GGNCC 1 cut(s) 340
ScaI AGTACT 1 cut(s) 100
SetI ASST 7 cut(s) 175, 181, 233, 247, 263, 356, 394
SfaNI GCATC 1 cut(s) 43
SmiMI CAYNNNNRTG 1 cut(s) 315
Sse9I AATT 5 cut(s) 11, 108, 255, 296, 381
SspMI CTAG 2 cut(s) 102, 333
TaiI ACGT 1 cut(s) 181
TaqI TCGA 1 cut(s) 73
TasI AATT 5 cut(s) 11, 108, 255, 296, 381
TatI WGTACW 1 cut(s) 98
TfiI GAWTC 2 cut(s) 16, 407
Tru1I TTAA 2 cut(s) 107, 111
Tru9I TTAA 2 cut(s) 107, 111
TscAI CASTG 2 cut(s) 136, 292
TseFI GTSAC 1 cut(s) 319
Tsp45I GTSAC 1 cut(s) 319
TspDTI ATGAA 2 cut(s) 266, 399
TspRI CASTG 2 cut(s) 136, 292
VspI ATTAAT 1 cut(s) 107
XapI RAATTY 1 cut(s) 296
XceI RCATGY 1 cut(s) 62
XmnI GAANNNNTTC 1 cut(s) 15
XspI CTAG 2 cut(s) 102, 333
ZrmI AGTACT 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.