Rmu_sc0010475.1_g000001

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010475.1
OG0000325
Physical Location & Seq
Forward (+)
87 .. 764
678 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010475.1_g000001.1.cds

Sequence Viewer

Length: 678 bp
atgaaaagcacacaacgtagtgaatgcatgaataatgtgcttaagaaatatttgaggccggagcataatcttttgcggttttttgaacattatgaaagagttttagctgatcgaagatatgaagagttgattgctgaatacaagatgatacaaacaactcctgtcttagcagtaagtgcacatatgctgcaacatgcagcagaggtctatactccaaaggttttcttgctgtttcaaaaagaatttgtgagaattcataattatagtacttacaaggttggcaagtctgggtcgacatcagagtatatagtatcatatagttctgaacataatgagcacttggtcagatatgaagattcagcacaaaatgttgattgtagttgtaaaaagtttacttttgttgggattctgtgtgttcatgcactaaaagtgcttgacaagaagaatgtgaagaagattccaccgcaatacattttaaagcgatggacaagagaagcaaaaattatgagtattactagttatcatggaaatgaggttcacggtaatcctaaggaatcgatcggcaaacggtatggctacttgtgccgcacttctcgtgatattttaactgttgcagcagatgatgaagagttaacaagatatgcacatgaatatcctgatgatgtgattcttggttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

225

Amino Acids

26.32

Weight (kDa)

8.8

Isoelectric Point (pI)

39.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 293
AciI CCGC 3 cut(s) 76, 464, 586
AcsI RAATTY 2 cut(s) 242, 252
AfaI GTAC 1 cut(s) 268
AflII CTTAAG 1 cut(s) 41
AgsI TTSAA 2 cut(s) 86, 236
AhlI ACTAGT 1 cut(s) 515
AloI GAACNNNNNNTCC 2 cut(s) 519, 551
AluBI AGCT 1 cut(s) 107
AluI AGCT 1 cut(s) 107
Alw21I GWGCWC 2 cut(s) 181, 339
Alw44I GTGCAC 1 cut(s) 177
AoxI GGCC 1 cut(s) 56
ApaLI GTGCAC 1 cut(s) 177
ApeKI GCWGC 3 cut(s) 187, 197, 614
ApoI RAATTY 2 cut(s) 242, 252
AxyI CCTNAGG 1 cut(s) 549
BaeGI GKGCMC 1 cut(s) 181
BauI CACGAG 1 cut(s) 594
Bbv12I GWGCWC 2 cut(s) 181, 339
BbvI GCAGC 3 cut(s) 174, 209, 626
BccI CCATC 1 cut(s) 477
BcuI ACTAGT 1 cut(s) 515
BfaI CTAG 1 cut(s) 516
BfrI CTTAAG 1 cut(s) 41
BisI GCNGC 4 cut(s) 188, 198, 586, 615
BlsI GCNGC 4 cut(s) 189, 199, 587, 616
BmcAI AGTACT 1 cut(s) 268
Bsa29I ATCGAT 1 cut(s) 557
Bse21I CCTNAGG 1 cut(s) 549
BseCI ATCGAT 1 cut(s) 557
BseSI GKGCMC 1 cut(s) 181
BseXI GCAGC 3 cut(s) 174, 209, 626
Bsh1285I CGRYCG 1 cut(s) 561
BshFI GGCC 1 cut(s) 58
BshVI ATCGAT 1 cut(s) 557
BsiEI CGRYCG 1 cut(s) 561
BsiHKAI GWGCWC 2 cut(s) 181, 339
BsiSI CCGG 1 cut(s) 59
BsmI GAATGC 1 cut(s) 29
BsnI GGCC 1 cut(s) 58
Bsp1286I GDGCHC 2 cut(s) 181, 339
Bsp143I GATC 2 cut(s) 109, 558
BspACI CCGC 3 cut(s) 76, 464, 586
BspANI GGCC 1 cut(s) 58
BspDI ATCGAT 1 cut(s) 557
BspTI CTTAAG 1 cut(s) 41
BssMI GATC 2 cut(s) 109, 558
BssSI CACGAG 1 cut(s) 594
Bst2BI CACGAG 1 cut(s) 594
Bst4CI ACNGT 3 cut(s) 542, 570, 610
Bst6I CTCTTC 2 cut(s) 117, 621
BstAFI CTTAAG 1 cut(s) 41
BstAPI GCANNNNNTGC 1 cut(s) 176
BstDEI CTNAG 2 cut(s) 166, 549
BstKTI GATC 2 cut(s) 112, 561
BstMBI GATC 2 cut(s) 109, 558
BstMCI CGRYCG 1 cut(s) 561
BstMWI GCNNNNNNNGC 2 cut(s) 176, 582
BstNSI RCATGY 1 cut(s) 197
BstSLI GKGCMC 1 cut(s) 181
BstV1I GCAGC 3 cut(s) 174, 209, 626
Bsu15I ATCGAT 1 cut(s) 557
Bsu36I CCTNAGG 1 cut(s) 549
BsuRI GGCC 1 cut(s) 58
BsuTUI ATCGAT 1 cut(s) 557
BtgZI GCGATG 1 cut(s) 496
ClaI ATCGAT 1 cut(s) 557
Csp6I GTAC 1 cut(s) 267
CviAII CATG 5 cut(s) 28, 194, 419, 524, 647
CviJI RGCY 3 cut(s) 58, 107, 576
CviKI_1 RGCY 3 cut(s) 58, 107, 576
CviQI GTAC 1 cut(s) 267
DdeI CTNAG 2 cut(s) 166, 549
DpnI GATC 2 cut(s) 111, 560
DpnII GATC 2 cut(s) 109, 558
DraI TTTAAA 1 cut(s) 477
Eam1104I CTCTTC 2 cut(s) 117, 621
EarI CTCTTC 2 cut(s) 117, 621
Eco81I CCTNAGG 1 cut(s) 549
EcoRI GAATTC 1 cut(s) 252
EcoT22I ATGCAT 1 cut(s) 29
FaeI CATG 5 cut(s) 31, 197, 422, 527, 650
FalI AAGNNNNNCTT 2 cut(s) 209, 241
FatI CATG 5 cut(s) 27, 193, 418, 523, 646
FauNDI CATATG 1 cut(s) 183
FblI GTMKAC 1 cut(s) 293
Fnu4HI GCNGC 4 cut(s) 188, 198, 586, 615
Fsp4HI GCNGC 4 cut(s) 188, 198, 586, 615
FspBI CTAG 1 cut(s) 516
GluI GCNGC 4 cut(s) 188, 198, 586, 615
HaeIII GGCC 1 cut(s) 58
HapII CCGG 1 cut(s) 59
Hin1II CATG 5 cut(s) 31, 197, 422, 527, 650
HincII GTYRAC 2 cut(s) 294, 633
HindII GTYRAC 2 cut(s) 294, 633
HinfI GANTC 5 cut(s) 356, 406, 457, 554, 667
HpaI GTTAAC 1 cut(s) 633
HpaII CCGG 1 cut(s) 59
Hpy166II GTNNAC 5 cut(s) 179, 294, 393, 538, 633
Hpy188I TCNGA 3 cut(s) 301, 325, 347
Hpy188III TCNNGA 2 cut(s) 596, 656
Hpy8I GTNNAC 5 cut(s) 179, 294, 393, 538, 633
HpyCH4III ACNGT 3 cut(s) 542, 570, 610
HpyCH4IV ACGT 1 cut(s) 16
HpyCH4V TGCA 7 cut(s) 27, 179, 190, 197, 422, 614, 644
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 582
HpyF3I CTNAG 2 cut(s) 166, 549
HpySE526I ACGT 1 cut(s) 16
Hsp92II CATG 5 cut(s) 31, 197, 422, 527, 650
KspAI GTTAAC 1 cut(s) 633
Kzo9I GATC 2 cut(s) 109, 558
LmnI GCTCC 1 cut(s) 61
LpnPI CCDG 4 cut(s) 72, 174, 273, 669
Lsp1109I GCAGC 3 cut(s) 174, 209, 626
MaeI CTAG 1 cut(s) 516
MaeII ACGT 1 cut(s) 16
MalI GATC 2 cut(s) 111, 560
MboI GATC 2 cut(s) 109, 558
MboII GAAGA 7 cut(s) 126, 134, 365, 454, 463, 466, 638
MhlI GDGCHC 2 cut(s) 181, 339
MluCI AATT 4 cut(s) 242, 252, 259, 501
MnlI CCTC 3 cut(s) 48, 196, 526
Mph1103I ATGCAT 1 cut(s) 29
MseI TTAA 5 cut(s) 42, 476, 605, 632, 676
MslI CAYNNNNRTG 1 cut(s) 528
MspCI CTTAAG 1 cut(s) 41
MspI CCGG 1 cut(s) 59
Mva1269I GAATGC 1 cut(s) 29
MwoI GCNNNNNNNGC 2 cut(s) 176, 582
NdeI CATATG 1 cut(s) 183
NdeII GATC 2 cut(s) 109, 558
NlaIII CATG 5 cut(s) 31, 197, 422, 527, 650
NsiI ATGCAT 1 cut(s) 29
NspI RCATGY 1 cut(s) 197
PctI GAATGC 1 cut(s) 29
PfeI GAWTC 5 cut(s) 356, 406, 457, 554, 667
PkrI GCNGC 4 cut(s) 189, 199, 587, 616
Ple19I CGATCG 1 cut(s) 561
PvuI CGATCG 1 cut(s) 561
RsaI GTAC 1 cut(s) 268
RsaNI GTAC 1 cut(s) 267
RseI CAYNNNNRTG 1 cut(s) 528
SalI GTCGAC 1 cut(s) 292
SaqAI TTAA 5 cut(s) 42, 476, 605, 632, 676
SatI GCNGC 4 cut(s) 188, 198, 586, 615
Sau3AI GATC 2 cut(s) 109, 558
ScaI AGTACT 1 cut(s) 268
SduI GDGCHC 2 cut(s) 181, 339
SetI ASST 6 cut(s) 19, 109, 207, 222, 279, 537
SmiMI CAYNNNNRTG 1 cut(s) 528
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
SpeI ACTAGT 1 cut(s) 515
Sse9I AATT 4 cut(s) 242, 252, 259, 501
SsiI CCGC 3 cut(s) 76, 464, 586
SspI AATATT 1 cut(s) 50
SspMI CTAG 1 cut(s) 516
TaaI ACNGT 3 cut(s) 542, 570, 610
TaiI ACGT 1 cut(s) 19
TaqI TCGA 3 cut(s) 112, 293, 557
TasI AATT 4 cut(s) 242, 252, 259, 501
TatI WGTACW 1 cut(s) 266
TauI GCSGC 1 cut(s) 588
TfiI GAWTC 5 cut(s) 356, 406, 457, 554, 667
Tru1I TTAA 5 cut(s) 42, 476, 605, 632, 676
Tru9I TTAA 5 cut(s) 42, 476, 605, 632, 676
TseI GCWGC 3 cut(s) 187, 197, 614
TspDTI ATGAA 9 cut(s) 17, 44, 108, 135, 245, 366, 407, 639, 663
Vha464I CTTAAG 1 cut(s) 41
VneI GTGCAC 1 cut(s) 177
XapI RAATTY 2 cut(s) 242, 252
XceI RCATGY 1 cut(s) 197
XmiI GTMKAC 1 cut(s) 293
XspI CTAG 1 cut(s) 516
ZrmI AGTACT 1 cut(s) 268
Zsp2I ATGCAT 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.