Rorug01G0398600

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000325
Physical Location & Seq
Forward (+)
50709329 .. 50710089
761 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0398600.1

Sequence Viewer

Length: 519 bp
ATGGGCGGAAATGGAACTTCACCGTGCGCCTCTTGCAAGTTGCTGAGACGCCGATGCGCCCAAGACTGCATTTTTGCCCCTTACTTTCCCTCCGATGACCCCCACAAGTTCGCCATCGTGCACAAAGTCTTCGGTGCTAGCAATGTTAGCAAGATGTTACAGGAGCTTCCAGTTCACCAGAGAACAGATGCAGTGAGCAGTCTAGTGTATGAAGCCAATGCAAGAGTGAGAGACCCAGTTTATGGGTGTGTTGGGGCCATTTCTTGCCTGCAAAACCAAGTCTCTGAGCTGCAAATGCAACTTGCTGTGGCTCAGGCCGAGATCCTCTGCATTCAGATGCAGCAAGAGCCTATGGTACTCCCTTCCCAGCAGATCGACACATGCTCAGACGATGAGAGGACATATTTCCTCAACAACGATCTCCCTCAGTACCTGGACTTTCCCTCTTCTAGTTCTAGCAATATAATCCATGACTCTCTCAAGAGGGAGGGCATCTTTGGACATGACATGGTCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

172

Amino Acids

19.07

Weight (kDa)

5.23

Isoelectric Point (pI)

60.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 8 - 105 9e-43 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 242
AciI CCGC 1 cut(s) 6
AclWI GGATC 1 cut(s) 316
AcyI GRCGYC 1 cut(s) 49
AfaI GTAC 2 cut(s) 357, 431
AfiI CCNNNNNNNGG 1 cut(s) 242
AjnI CCWGG 1 cut(s) 432
AluBI AGCT 2 cut(s) 166, 289
AluI AGCT 2 cut(s) 166, 289
Alw21I GWGCWC 1 cut(s) 123
Alw26I GTCTC 3 cut(s) 40, 225, 286
Alw44I GTGCAC 1 cut(s) 119
AlwI GGATC 1 cut(s) 316
AlwNI CAGNNNCTG 1 cut(s) 433
AoxI GGCC 2 cut(s) 255, 315
ApaLI GTGCAC 1 cut(s) 119
ApeKI GCWGC 2 cut(s) 289, 340
ArsI GACNNNNNNTTYG 2 cut(s) 56, 88
AspLEI GCGC 2 cut(s) 29, 59
AspS9I GGNCC 1 cut(s) 255
AsuHPI GGTGA 2 cut(s) 12, 167
AsuNHI GCTAGC 1 cut(s) 137
BaeGI GKGCMC 1 cut(s) 123
BbsI GAAGAC 1 cut(s) 121
Bbv12I GWGCWC 1 cut(s) 123
BbvI GCAGC 2 cut(s) 276, 352
BccI CCATC 1 cut(s) 122
BciT130I CCWGG 1 cut(s) 434
BcoDI GTCTC 3 cut(s) 40, 225, 286
BfaI CTAG 4 cut(s) 138, 203, 450, 456
BisI GCNGC 2 cut(s) 290, 341
BlsI GCNGC 2 cut(s) 291, 342
Bme1390I CCNGG 1 cut(s) 434
BmgT120I GGNCC 1 cut(s) 255
BmiI GGNNCC 1 cut(s) 256
BmrFI CCNGG 1 cut(s) 434
BmrI ACTGGG 1 cut(s) 230
BmsI GCATC 4 cut(s) 44, 178, 327, 501
BmtI GCTAGC 1 cut(s) 141
BmuI ACTGGG 1 cut(s) 230
BpiI GAAGAC 1 cut(s) 121
Bpu10I CCTNAGC 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 464
BsaHI GRCGYC 1 cut(s) 49
BsaI GGTCTC 1 cut(s) 225
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 1 cut(s) 242
Bse1I ACTGG 2 cut(s) 170, 236
Bse3DI GCAATG 1 cut(s) 148
BseBI CCWGG 1 cut(s) 434
BseLI CCNNNNNNNGG 1 cut(s) 242
BseMI GCAATG 1 cut(s) 148
BseMII CTCAG 5 cut(s) 35, 276, 326, 399, 440
BseNI ACTGG 2 cut(s) 170, 236
BseSI GKGCMC 1 cut(s) 123
BseXI GCAGC 2 cut(s) 276, 352
BseYI CCCAGC 1 cut(s) 366
BshFI GGCC 2 cut(s) 257, 317
BsiHKAI GWGCWC 1 cut(s) 123
BslI CCNNNNNNNGG 1 cut(s) 242
BsmAI GTCTC 3 cut(s) 40, 225, 286
BsmBI CGTCTC 1 cut(s) 40
BsmI GAATGC 1 cut(s) 330
BsnI GGCC 2 cut(s) 257, 317
Bso31I GGTCTC 1 cut(s) 225
Bsp1286I GDGCHC 1 cut(s) 123
Bsp143I GATC 3 cut(s) 321, 372, 418
BspACI CCGC 1 cut(s) 6
BspANI GGCC 2 cut(s) 257, 317
BspCNI CTCAG 5 cut(s) 36, 277, 325, 398, 439
BspLI GGNNCC 1 cut(s) 256
BspOI GCTAGC 1 cut(s) 141
BspPI GGATC 1 cut(s) 316
BspTNI GGTCTC 1 cut(s) 225
BsrDI GCAATG 1 cut(s) 148
BsrI ACTGG 2 cut(s) 170, 236
BssMI GATC 3 cut(s) 321, 372, 418
BssNI GRCGYC 1 cut(s) 49
Bst2UI CCWGG 1 cut(s) 434
Bst4CI ACNGT 1 cut(s) 24
Bst6I CTCTTC 1 cut(s) 451
BstACI GRCGYC 1 cut(s) 49
BstC8I GCNNGC 2 cut(s) 139, 269
BstDEI CTNAG 5 cut(s) 44, 285, 312, 385, 426
BstHHI GCGC 2 cut(s) 29, 59
BstKTI GATC 3 cut(s) 324, 375, 421
BstMAI GTCTC 3 cut(s) 40, 225, 286
BstMBI GATC 3 cut(s) 321, 372, 418
BstMWI GCNNNNNNNGC 4 cut(s) 33, 147, 295, 346
BstNI CCWGG 1 cut(s) 434
BstNSI RCATGY 1 cut(s) 384
BstSCI CCNGG 1 cut(s) 432
BstSLI GKGCMC 1 cut(s) 123
BstV1I GCAGC 2 cut(s) 276, 352
BstV2I GAAGAC 1 cut(s) 121
BstX2I RGATCY 1 cut(s) 321
BstYI RGATCY 1 cut(s) 321
BsuRI GGCC 2 cut(s) 257, 317
BtsI GCAGTG 1 cut(s) 198
BtsIMutI CAGTG 1 cut(s) 198
Cac8I GCNNGC 2 cut(s) 139, 269
CaiI CAGNNNCTG 1 cut(s) 433
CfoI GCGC 2 cut(s) 29, 59
Cfr13I GGNCC 1 cut(s) 255
CseI GACGC 1 cut(s) 57
Csp6I GTAC 2 cut(s) 356, 430
CviAII CATG 4 cut(s) 381, 470, 503, 508
CviJI RGCY 7 cut(s) 166, 215, 257, 289, 311, 317, 349
CviKI_1 RGCY 7 cut(s) 166, 215, 257, 289, 311, 317, 349
CviQI GTAC 2 cut(s) 356, 430
DdeI CTNAG 5 cut(s) 44, 285, 312, 385, 426
DpnI GATC 3 cut(s) 323, 374, 420
DpnII GATC 3 cut(s) 321, 372, 418
Eam1104I CTCTTC 1 cut(s) 451
EarI CTCTTC 1 cut(s) 451
EciI GGCGGA 1 cut(s) 21
Eco31I GGTCTC 1 cut(s) 225
EcoRII CCWGG 1 cut(s) 432
Esp3I CGTCTC 1 cut(s) 40
FaeI CATG 4 cut(s) 384, 473, 506, 511
FaiI YATR 9 cut(s) 210, 243, 353, 382, 403, 464, 471, 504, 509
FatI CATG 4 cut(s) 380, 469, 502, 507
Fnu4HI GCNGC 2 cut(s) 290, 341
Fsp4HI GCNGC 2 cut(s) 290, 341
FspBI CTAG 4 cut(s) 138, 203, 450, 456
GlaI GCGC 2 cut(s) 28, 58
GluI GCNGC 2 cut(s) 290, 341
GsaI CCCAGC 1 cut(s) 370
HaeIII GGCC 2 cut(s) 257, 317
HgaI GACGC 1 cut(s) 57
HhaI GCGC 2 cut(s) 29, 59
Hin1I GRCGYC 1 cut(s) 49
Hin1II CATG 4 cut(s) 384, 473, 506, 511
Hin6I GCGC 2 cut(s) 27, 57
HinP1I GCGC 2 cut(s) 27, 57
HinfI GANTC 1 cut(s) 473
HphI GGTGA 2 cut(s) 12, 167
Hpy166II GTNNAC 2 cut(s) 121, 175
Hpy188I TCNGA 4 cut(s) 94, 286, 336, 388
Hpy188III TCNNGA 1 cut(s) 481
Hpy8I GTNNAC 2 cut(s) 121, 175
HpyAV CCTTC 1 cut(s) 372
HpyCH4III ACNGT 1 cut(s) 24
HpyF10VI GCNNNNNNNGC 4 cut(s) 33, 147, 295, 346
HpyF3I CTNAG 5 cut(s) 44, 285, 312, 385, 426
Hsp92I GRCGYC 1 cut(s) 49
Hsp92II CATG 4 cut(s) 384, 473, 506, 511
HspAI GCGC 2 cut(s) 27, 57
Kzo9I GATC 3 cut(s) 321, 372, 418
LmnI GCTCC 1 cut(s) 163
LpnPI CCDG 9 cut(s) 146, 183, 191, 249, 281, 299, 380, 419, 446
Lsp1109I GCAGC 2 cut(s) 276, 352
LweI GCATC 4 cut(s) 44, 178, 327, 501
MaeI CTAG 4 cut(s) 138, 203, 450, 456
MaeIII GTNAC 1 cut(s) 156
MalI GATC 3 cut(s) 323, 374, 420
MboI GATC 3 cut(s) 321, 372, 418
MboII GAAGA 2 cut(s) 121, 438
MflI RGATCY 1 cut(s) 321
MhlI GDGCHC 1 cut(s) 123
MlyI GAGTC 1 cut(s) 467
MnlI CCTC 9 cut(s) 40, 100, 335, 390, 419, 435, 454, 477, 481
MseI TTAA 1 cut(s) 517
MslI CAYNNNNRTG 1 cut(s) 335
MspR9I CCNGG 1 cut(s) 434
Mva1269I GAATGC 1 cut(s) 330
MvaI CCWGG 1 cut(s) 434
MwoI GCNNNNNNNGC 4 cut(s) 33, 147, 295, 346
NdeII GATC 3 cut(s) 321, 372, 418
NheI GCTAGC 1 cut(s) 137
NlaIII CATG 4 cut(s) 384, 473, 506, 511
NlaIV GGNNCC 1 cut(s) 256
NmeAIII GCCGAG 1 cut(s) 343
NspI RCATGY 1 cut(s) 384
PctI GAATGC 1 cut(s) 330
PflFI GACNNNGTC 1 cut(s) 509
PflMI CCANNNNNTGG 1 cut(s) 242
PkrI GCNGC 2 cut(s) 291, 342
PleI GAGTC 1 cut(s) 467
PpsI GAGTC 1 cut(s) 467
Psp6I CCWGG 1 cut(s) 432
PspFI CCCAGC 1 cut(s) 366
PspGI CCWGG 1 cut(s) 432
PspN4I GGNNCC 1 cut(s) 256
PspPI GGNCC 1 cut(s) 255
PstNI CAGNNNCTG 1 cut(s) 433
PsuI RGATCY 1 cut(s) 321
PsyI GACNNNGTC 1 cut(s) 509
RsaI GTAC 2 cut(s) 357, 431
RsaNI GTAC 2 cut(s) 356, 430
RseI CAYNNNNRTG 1 cut(s) 335
SaqAI TTAA 1 cut(s) 517
SatI GCNGC 2 cut(s) 290, 341
Sau3AI GATC 3 cut(s) 321, 372, 418
Sau96I GGNCC 1 cut(s) 255
SchI GAGTC 1 cut(s) 467
ScrFI CCNGG 1 cut(s) 434
SduI GDGCHC 1 cut(s) 123
SetI ASST 3 cut(s) 168, 291, 435
SfaNI GCATC 4 cut(s) 44, 178, 327, 501
SmiMI CAYNNNNRTG 1 cut(s) 335
SmlI CTYRAG 1 cut(s) 479
SmoI CTYRAG 1 cut(s) 479
SsiI CCGC 1 cut(s) 6
SspMI CTAG 4 cut(s) 138, 203, 450, 456
StyD4I CCNGG 1 cut(s) 432
TaaI ACNGT 1 cut(s) 24
TaqI TCGA 1 cut(s) 375
Tru1I TTAA 1 cut(s) 517
Tru9I TTAA 1 cut(s) 517
TscAI CASTG 1 cut(s) 198
TseI GCWGC 2 cut(s) 289, 340
TspDTI ATGAA 1 cut(s) 225
TspRI CASTG 1 cut(s) 198
Tth111I GACNNNGTC 1 cut(s) 509
Van91I CCANNNNNTGG 1 cut(s) 242
VneI GTGCAC 1 cut(s) 119
XceI RCATGY 1 cut(s) 384
XspI CTAG 4 cut(s) 138, 203, 450, 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.